HEADER DNA BINDING PROTEIN/DNA 16-JUL-14 4U29 OBSLTE 11-MAR-15 4U29 4YIR TITLE CRYSTAL STRUCTURE OF RAD4-RAD23 CROSSLINKED TO A NORMAL DNA DUPLEX CAVEAT 4U29 G47 W 8 HAS WRONG CHIRALITY AT ATOM C4' G47 W 8 HAS WRONG CAVEAT 2 4U29 CHIRALITY AT ATOM C3' G47 W 8 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 4U29 C1' COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN RAD4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 127-632; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23; COMPND 9 CHAIN: X; COMPND 10 FRAGMENT: UNP RESIDUES 256-308; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*(G47) COMPND 14 P*AP*CP*AP*TP*CP*CP*CP*CP*CP*GP*CP*TP*AP*CP*AP*A)-3'); COMPND 15 CHAIN: W; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'- COMPND 19 D(*AP*TP*TP*GP*TP*AP*GP*CP*T*GP*GP*GP*AP*TP*GP*TP*CP*GP*AP*GP*TP*CP*A COMPND 20 )-3'); COMPND 21 CHAIN: Y; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: RAD4; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE CELLS (BTI-TN-5B1-4); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 GENE: RAD23; SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE CELLS (BTI-TN-5B1-4); SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES KEYWDS DNA DAMAGE REPAIR, NUCLEOTIDE EXCISION REPAIR, PROTEIN-DNA KEYWDS 2 INTERACTIONS, PROTEIN-DNA CROSSLINKING, PROTEIN-DNA COMPLEX, KEYWDS 3 XERODERMA PIGMENTOSUM, BETA-HAIRPIN, TRANSGLUTAMINASE DOMAIN, KEYWDS 4 DISULFIDE CROSSLINKING, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.-H.MIN,X.CHEN,Y.KIM REVDAT 2 11-MAR-15 4U29 1 OBSLTE REVDAT 1 04-MAR-15 4U29 0 JRNL AUTH X.CHEN,Y.VELMURUGU,G.ZHENG,B.PARK,Y.SHIM,Y.KIM,L.LIU, JRNL AUTH 2 B.VAN HOUTEN,C.HE,A.ANSARI,J.H.MIN JRNL TITL KINETIC GATING MECHANISM OF DNA DAMAGE RECOGNITION BY JRNL TITL 2 RAD4/XPC. JRNL REF NAT COMMUN V. 6 5849 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25562780 JRNL DOI 10.1038/NCOMMS6849 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.180 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 45912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.640 REMARK 3 FREE R VALUE TEST SET COUNT : 3506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7058 - 8.8865 0.99 1704 146 0.1806 0.2237 REMARK 3 2 8.8865 - 7.0664 1.00 1748 143 0.1854 0.1867 REMARK 3 3 7.0664 - 6.1770 1.00 1725 149 0.2111 0.2423 REMARK 3 4 6.1770 - 5.6139 1.00 1727 144 0.2029 0.2359 REMARK 3 5 5.6139 - 5.2125 1.00 1749 140 0.1791 0.2302 REMARK 3 6 5.2125 - 4.9057 1.00 1754 132 0.1793 0.2121 REMARK 3 7 4.9057 - 4.6604 1.00 1719 146 0.1747 0.2232 REMARK 3 8 4.6604 - 4.4579 1.00 1754 139 0.1668 0.2209 REMARK 3 9 4.4579 - 4.2865 1.00 1772 144 0.1791 0.2803 REMARK 3 10 4.2865 - 4.1387 1.00 1695 138 0.1847 0.2918 REMARK 3 11 4.1387 - 4.0094 1.00 1742 150 0.1951 0.2282 REMARK 3 12 4.0094 - 3.8949 1.00 1767 148 0.2122 0.2701 REMARK 3 13 3.8949 - 3.7925 1.00 1727 139 0.2223 0.3003 REMARK 3 14 3.7925 - 3.7000 1.00 1733 145 0.2177 0.3358 REMARK 3 15 3.7000 - 3.6159 1.00 1686 147 0.2146 0.2875 REMARK 3 16 3.6159 - 3.5390 1.00 1787 148 0.2279 0.2860 REMARK 3 17 3.5390 - 3.4683 1.00 1726 147 0.2179 0.2416 REMARK 3 18 3.4683 - 3.4029 1.00 1717 143 0.2248 0.2822 REMARK 3 19 3.4029 - 3.3421 1.00 1754 148 0.2311 0.2557 REMARK 3 20 3.3421 - 3.2855 1.00 1710 144 0.2389 0.3042 REMARK 3 21 3.2855 - 3.2325 1.00 1757 149 0.2426 0.2943 REMARK 3 22 3.2325 - 3.1828 0.99 1695 142 0.2538 0.3553 REMARK 3 23 3.1828 - 3.1360 0.96 1709 139 0.2703 0.3208 REMARK 3 24 3.1360 - 3.0919 0.83 1452 113 0.2995 0.3461 REMARK 3 25 3.0919 - 3.0501 0.64 1097 83 0.3526 0.3858 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 5653 REMARK 3 ANGLE : 1.940 7809 REMARK 3 CHIRALITY : 0.091 848 REMARK 3 PLANARITY : 0.008 833 REMARK 3 DIHEDRAL : 21.330 2230 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7939 19.1591 428.0489 REMARK 3 T TENSOR REMARK 3 T11: 0.1784 T22: 0.3467 REMARK 3 T33: 0.0119 T12: 0.1943 REMARK 3 T13: 0.3648 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 0.1016 L22: 0.0460 REMARK 3 L33: 0.0835 L12: -0.0015 REMARK 3 L13: -0.0410 L23: 0.0058 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: 0.0776 S13: 0.0286 REMARK 3 S21: -0.0696 S22: 0.0379 S23: -0.1599 REMARK 3 S31: 0.0697 S32: -0.0900 S33: 0.1357 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 632 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9647 46.1746 440.6198 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: 0.3816 REMARK 3 T33: 0.6072 T12: 0.1767 REMARK 3 T13: 0.3990 T23: -0.1036 REMARK 3 L TENSOR REMARK 3 L11: 0.0270 L22: 0.0517 REMARK 3 L33: 0.0413 L12: 0.0009 REMARK 3 L13: 0.0026 L23: 0.0196 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: 0.0371 S13: 0.1042 REMARK 3 S21: -0.0078 S22: -0.0781 S23: -0.0268 REMARK 3 S31: 0.0354 S32: 0.0786 S33: -0.1209 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 256 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1417 5.6095 423.9901 REMARK 3 T TENSOR REMARK 3 T11: 0.4071 T22: 0.4429 REMARK 3 T33: 0.3935 T12: 0.1305 REMARK 3 T13: 0.1451 T23: -0.0993 REMARK 3 L TENSOR REMARK 3 L11: 0.0005 L22: 0.0005 REMARK 3 L33: 0.0008 L12: -0.0004 REMARK 3 L13: -0.0005 L23: 0.0007 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: 0.0009 S13: -0.0099 REMARK 3 S21: 0.0053 S22: 0.0113 S23: 0.0000 REMARK 3 S31: 0.0052 S32: 0.0065 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 273 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4613 6.7120 433.8866 REMARK 3 T TENSOR REMARK 3 T11: 0.6069 T22: 0.5876 REMARK 3 T33: 0.5946 T12: 0.0963 REMARK 3 T13: -0.0164 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 0.0033 L22: 0.0003 REMARK 3 L33: 0.0006 L12: -0.0009 REMARK 3 L13: 0.0008 L23: 0.0002 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.0021 S13: -0.0055 REMARK 3 S21: 0.0102 S22: -0.0120 S23: -0.0001 REMARK 3 S31: 0.0065 S32: 0.0036 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 287 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4239 16.8974 432.1410 REMARK 3 T TENSOR REMARK 3 T11: 0.3638 T22: 0.5326 REMARK 3 T33: 0.4862 T12: 0.0792 REMARK 3 T13: 0.0368 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 0.0011 L22: -0.0000 REMARK 3 L33: -0.0003 L12: -0.0003 REMARK 3 L13: -0.0002 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: -0.0004 S13: 0.0012 REMARK 3 S21: 0.0001 S22: 0.0059 S23: 0.0011 REMARK 3 S31: 0.0025 S32: 0.0023 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 297 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0302 16.9307 421.3395 REMARK 3 T TENSOR REMARK 3 T11: 0.4936 T22: 0.6234 REMARK 3 T33: 0.5672 T12: 0.0491 REMARK 3 T13: 0.1925 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.0013 L22: 0.0027 REMARK 3 L33: 0.0017 L12: 0.0012 REMARK 3 L13: -0.0007 L23: 0.0020 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.0032 S13: -0.0001 REMARK 3 S21: 0.0007 S22: 0.0005 S23: 0.0002 REMARK 3 S31: -0.0037 S32: 0.0057 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'W' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9471 31.4920 458.4206 REMARK 3 T TENSOR REMARK 3 T11: 0.4122 T22: 0.5235 REMARK 3 T33: 0.4879 T12: -0.0752 REMARK 3 T13: 0.0428 T23: -0.1181 REMARK 3 L TENSOR REMARK 3 L11: 0.0026 L22: 0.0015 REMARK 3 L33: 0.0017 L12: -0.0002 REMARK 3 L13: -0.0006 L23: 0.0008 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: -0.0082 S13: -0.0114 REMARK 3 S21: 0.0027 S22: 0.0139 S23: 0.0002 REMARK 3 S31: 0.0060 S32: -0.0059 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'W' AND (RESID 7 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.2337 34.1093 457.0548 REMARK 3 T TENSOR REMARK 3 T11: 0.5096 T22: 0.7956 REMARK 3 T33: 0.8195 T12: -0.0471 REMARK 3 T13: 0.0497 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 0.0062 L22: 0.0273 REMARK 3 L33: 0.0112 L12: 0.0155 REMARK 3 L13: -0.0074 L23: -0.0175 REMARK 3 S TENSOR REMARK 3 S11: -0.0778 S12: -0.0246 S13: 0.0008 REMARK 3 S21: -0.0075 S22: -0.0705 S23: -0.1148 REMARK 3 S31: -0.0485 S32: -0.0089 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'Y' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.8869 32.7798 457.8647 REMARK 3 T TENSOR REMARK 3 T11: 0.7127 T22: 1.0206 REMARK 3 T33: 1.1250 T12: -0.0473 REMARK 3 T13: 0.1287 T23: 0.0678 REMARK 3 L TENSOR REMARK 3 L11: 0.0019 L22: 0.0121 REMARK 3 L33: 0.0086 L12: 0.0000 REMARK 3 L13: 0.0001 L23: -0.0040 REMARK 3 S TENSOR REMARK 3 S11: -0.0446 S12: 0.0021 S13: 0.0015 REMARK 3 S21: 0.0267 S22: -0.0488 S23: -0.0139 REMARK 3 S31: -0.0288 S32: 0.0047 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'Y' AND (RESID 13 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0467 30.9801 458.8177 REMARK 3 T TENSOR REMARK 3 T11: 0.3734 T22: 0.6356 REMARK 3 T33: 0.5524 T12: -0.0021 REMARK 3 T13: 0.1107 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.0036 L22: 0.0071 REMARK 3 L33: 0.0092 L12: -0.0065 REMARK 3 L13: 0.0019 L23: 0.0008 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: -0.0450 S13: 0.0395 REMARK 3 S21: 0.0219 S22: 0.0661 S23: -0.0484 REMARK 3 S31: -0.0360 S32: -0.0057 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U29 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979195 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALEPACK REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25974 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.79200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS PROPANE HYDROCHLORIDE, SODIUM REMARK 280 CHLORIDE, ISOPROPANOL, CALCIUM CHLORIDE, PH 6.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 202.18300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.70250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.70250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.09150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.70250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.70250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 303.27450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.70250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.70250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.09150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.70250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.70250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 303.27450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 202.18300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X, W, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 517 REMARK 465 GLY A 518 REMARK 465 ARG A 519 REMARK 465 PRO A 520 REMARK 465 LYS A 521 REMARK 465 GLY A 522 REMARK 465 GLU A 523 REMARK 465 GLU A 524 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT Y 9 C4' O4' C3' O3' C2' C1' N1 REMARK 470 DT Y 9 C2 O2 N3 C4 O4 C5 C7 REMARK 470 DT Y 9 C6 REMARK 470 DG Y 11 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N2 G47 W 8 O2 DC Y 18 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O5' DT W 1 O3' DA W 24 1455 2.01 REMARK 500 O5' DA Y 1 O3' DA Y 24 1655 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA W 4 O3' DA W 4 C3' -0.059 REMARK 500 DA W 9 O3' DA W 9 C3' -0.048 REMARK 500 DA W 21 O3' DA W 21 C3' -0.047 REMARK 500 DT Y 22 O3' DT Y 22 C3' -0.053 REMARK 500 DA Y 24 N3 DA Y 24 C4 0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 391 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT W 1 N3 - C2 - O2 ANGL. DEV. = -4.9 DEGREES REMARK 500 DT W 2 O4' - C1' - C2' ANGL. DEV. = -7.5 DEGREES REMARK 500 DT W 2 N1 - C1' - C2' ANGL. DEV. = 8.6 DEGREES REMARK 500 DT W 2 N1 - C2 - O2 ANGL. DEV. = 6.6 DEGREES REMARK 500 DT W 2 N3 - C2 - O2 ANGL. DEV. = -5.2 DEGREES REMARK 500 DG W 3 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT W 6 O4' - C1' - C2' ANGL. DEV. = -5.7 DEGREES REMARK 500 DT W 6 N1 - C2 - O2 ANGL. DEV. = 10.2 DEGREES REMARK 500 DT W 6 N3 - C2 - O2 ANGL. DEV. = -10.6 DEGREES REMARK 500 DC W 7 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 DA W 9 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA W 9 N1 - C2 - N3 ANGL. DEV. = -3.0 DEGREES REMARK 500 DA W 9 N1 - C6 - N6 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA W 9 C5 - C6 - N6 ANGL. DEV. = -5.4 DEGREES REMARK 500 DC W 10 O4' - C1' - N1 ANGL. DEV. = 5.6 DEGREES REMARK 500 DT W 12 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC W 14 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC W 14 O4' - C1' - C2' ANGL. DEV. = -7.1 DEGREES REMARK 500 DC W 14 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC W 15 C6 - N1 - C2 ANGL. DEV. = -2.9 DEGREES REMARK 500 DC W 17 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT W 20 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA W 21 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA W 21 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 DA W 21 C4 - C5 - N7 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA W 21 N9 - C4 - C5 ANGL. DEV. = -3.1 DEGREES REMARK 500 DA W 21 N1 - C6 - N6 ANGL. DEV. = 8.4 DEGREES REMARK 500 DA W 21 C5 - C6 - N6 ANGL. DEV. = -7.6 DEGREES REMARK 500 DA W 23 C6 - N1 - C2 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA W 23 N1 - C6 - N6 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA W 24 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA Y 1 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT Y 2 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT Y 5 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DT Y 5 C3' - C2' - C1' ANGL. DEV. = -8.0 DEGREES REMARK 500 DT Y 5 O4' - C1' - C2' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC Y 8 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG Y 11 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG Y 12 C1' - O4' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DG Y 12 O4' - C1' - N9 ANGL. DEV. = 10.0 DEGREES REMARK 500 DG Y 13 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DG Y 16 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC Y 18 OP1 - P - OP2 ANGL. DEV. = 10.3 DEGREES REMARK 500 DC Y 18 O5' - P - OP2 ANGL. DEV. = -10.4 DEGREES REMARK 500 DC Y 18 O4' - C4' - C3' ANGL. DEV. = 3.7 DEGREES REMARK 500 DC Y 18 C4' - C3' - C2' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC Y 18 O4' - C1' - C2' ANGL. DEV. = -7.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 62 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 129 74.55 58.27 REMARK 500 ASN A 222 -142.04 56.99 REMARK 500 ASN A 238 -76.88 -56.82 REMARK 500 ARG A 241 -144.34 57.81 REMARK 500 LEU A 246 -72.60 -97.92 REMARK 500 LYS A 247 -173.42 56.40 REMARK 500 GLN A 287 78.97 -116.00 REMARK 500 TRP A 316 -168.76 -161.78 REMARK 500 ASN A 334 -76.19 -79.46 REMARK 500 ARG A 342 -81.26 -118.04 REMARK 500 ARG A 361 -53.24 -135.36 REMARK 500 SER A 385 -76.27 -102.83 REMARK 500 LYS A 464 -176.59 -170.07 REMARK 500 ALA A 563 145.32 -172.13 REMARK 500 ASN A 576 135.55 -172.48 REMARK 500 SER A 596 170.98 176.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 247 ARG A 248 -148.61 REMARK 500 ARG A 601 GLY A 602 -140.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QSF RELATED DB: PDB REMARK 900 2QSF CONTAINS THE SAME PROTEIN BUT NO DNA REMARK 900 RELATED ID: 2QSG RELATED DB: PDB REMARK 900 2QSG CONTAINS THE SAME PROTEIN COMPLEXED WITH A UV-DAMAGED DNA REMARK 900 RELATED ID: 2QSH RELATED DB: PDB REMARK 900 2QSG CONTAINS THE SAME PROTEIN COMPLEXED WITH A MISMATCH DNA DBREF 4U29 A 127 632 UNP P14736 RAD4_YEAST 127 632 DBREF 4U29 X 256 308 UNP P32628 RAD23_YEAST 256 308 DBREF 4U29 W 1 24 PDB 4U29 4U29 1 24 DBREF 4U29 Y 1 24 PDB 4U29 4U29 1 24 SEQADV 4U29 ALA A 126 UNP P14736 EXPRESSION TAG SEQADV 4U29 CYS A 131 UNP P14736 VAL 131 ENGINEERED MUTATION SEQADV 4U29 SER A 132 UNP P14736 CYS 132 ENGINEERED MUTATION SEQADV 4U29 GLU A 223 UNP P14736 VAL 223 CONFLICT SEQADV 4U29 GLU A 524 UNP P14736 ALA 524 CONFLICT SEQADV 4U29 ALA A 525 UNP P14736 GLU 525 CONFLICT SEQRES 1 A 507 ALA THR SER ARG ASN CYS SER SER ASN GLU GLU ARG LYS SEQRES 2 A 507 ARG ARG LYS TYR PHE HIS MET LEU TYR LEU VAL CYS LEU SEQRES 3 A 507 MET VAL HIS GLY PHE ILE ARG ASN GLU TRP ILE ASN SER SEQRES 4 A 507 LYS ARG LEU SER ARG LYS LEU SER ASN LEU VAL PRO GLU SEQRES 5 A 507 LYS VAL PHE GLU LEU LEU HIS PRO GLN LYS ASP GLU GLU SEQRES 6 A 507 LEU PRO LEU ARG SER THR ARG LYS LEU LEU ASP GLY LEU SEQRES 7 A 507 LYS LYS CYS MET GLU LEU TRP GLN LYS HIS TRP LYS ILE SEQRES 8 A 507 THR LYS LYS TYR ASP ASN GLU GLY LEU TYR MET ARG THR SEQRES 9 A 507 TRP LYS GLU ILE GLU MET SER ALA ASN ASN LYS ARG LYS SEQRES 10 A 507 PHE LYS THR LEU LYS ARG SER ASP PHE LEU ARG ALA VAL SEQRES 11 A 507 SER LYS GLY HIS GLY ASP PRO ASP ILE SER VAL GLN GLY SEQRES 12 A 507 PHE VAL ALA MET LEU ARG ALA CYS ASN VAL ASN ALA ARG SEQRES 13 A 507 LEU ILE MET SER CYS GLN PRO PRO ASP PHE THR ASN MET SEQRES 14 A 507 LYS ILE ASP THR SER LEU ASN GLY ASN ASN ALA TYR LYS SEQRES 15 A 507 ASP MET VAL LYS TYR PRO ILE PHE TRP CYS GLU VAL TRP SEQRES 16 A 507 ASP LYS PHE SER LYS LYS TRP ILE THR VAL ASP PRO VAL SEQRES 17 A 507 ASN LEU LYS THR ILE GLU GLN VAL ARG LEU HIS SER LYS SEQRES 18 A 507 LEU ALA PRO LYS GLY VAL ALA CYS CYS GLU ARG ASN MET SEQRES 19 A 507 LEU ARG TYR VAL ILE ALA TYR ASP ARG LYS TYR GLY CYS SEQRES 20 A 507 ARG ASP VAL THR ARG ARG TYR ALA GLN TRP MET ASN SER SEQRES 21 A 507 LYS VAL ARG LYS ARG ARG ILE THR LYS ASP ASP PHE GLY SEQRES 22 A 507 GLU LYS TRP PHE ARG LYS VAL ILE THR ALA LEU HIS HIS SEQRES 23 A 507 ARG LYS ARG THR LYS ILE ASP ASP TYR GLU ASP GLN TYR SEQRES 24 A 507 PHE PHE GLN ARG ASP GLU SER GLU GLY ILE PRO ASP SER SEQRES 25 A 507 VAL GLN ASP LEU LYS ASN HIS PRO TYR TYR VAL LEU GLU SEQRES 26 A 507 GLN ASP ILE LYS GLN THR GLN ILE VAL LYS PRO GLY CYS SEQRES 27 A 507 LYS GLU CYS GLY TYR LEU LYS VAL HIS GLY LYS VAL GLY SEQRES 28 A 507 LYS VAL LEU LYS VAL TYR ALA LYS ARG ASP ILE ALA ASP SEQRES 29 A 507 LEU LYS SER ALA ARG GLN TRP TYR MET ASN GLY ARG ILE SEQRES 30 A 507 LEU LYS THR GLY SER ARG CYS LYS LYS VAL ILE LYS ARG SEQRES 31 A 507 THR VAL GLY ARG PRO LYS GLY GLU GLU ALA GLU GLU ASP SEQRES 32 A 507 GLU ARG LEU TYR SER PHE GLU ASP THR GLU LEU TYR ILE SEQRES 33 A 507 PRO PRO LEU ALA SER ALA SER GLY GLU ILE THR LYS ASN SEQRES 34 A 507 THR PHE GLY ASN ILE GLU VAL PHE ALA PRO THR MET ILE SEQRES 35 A 507 PRO GLY ASN CYS CYS LEU VAL GLU ASN PRO VAL ALA ILE SEQRES 36 A 507 LYS ALA ALA ARG PHE LEU GLY VAL GLU PHE ALA PRO ALA SEQRES 37 A 507 VAL THR SER PHE LYS PHE GLU ARG GLY SER THR VAL LYS SEQRES 38 A 507 PRO VAL LEU SER GLY ILE VAL VAL ALA LYS TRP LEU ARG SEQRES 39 A 507 GLU ALA ILE GLU THR ALA ILE ASP GLY ILE GLU PHE ILE SEQRES 1 X 53 GLY LEU THR VAL GLU ASP LEU LEU SER LEU ARG GLN VAL SEQRES 2 X 53 VAL SER GLY ASN PRO GLU ALA LEU ALA PRO LEU LEU GLU SEQRES 3 X 53 ASN ILE SER ALA ARG TYR PRO GLN LEU ARG GLU HIS ILE SEQRES 4 X 53 MET ALA ASN PRO GLU VAL PHE VAL SER MET LEU LEU GLU SEQRES 5 X 53 ALA SEQRES 1 W 24 DT DT DG DA DC DT DC G47 DA DC DA DT DC SEQRES 2 W 24 DC DC DC DC DG DC DT DA DC DA DA SEQRES 1 Y 23 DA DT DT DG DT DA DG DC DT DG DG DG DA SEQRES 2 Y 23 DT DG DT DC DG DA DG DT DC DA HET G47 W 8 34 HETNAM G47 N2-ETHANETHIOL-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE FORMUL 3 G47 C12 H18 N5 O7 P S HELIX 1 AA1 SER A 133 ASN A 163 1 31 HELIX 2 AA2 SER A 164 ASN A 173 1 10 HELIX 3 AA3 PRO A 176 HIS A 184 1 9 HELIX 4 AA4 LEU A 191 TRP A 214 1 24 HELIX 5 AA5 THR A 229 ALA A 237 1 9 HELIX 6 AA6 LEU A 246 GLY A 258 1 13 HELIX 7 AA7 ASP A 261 ALA A 275 1 15 HELIX 8 AA8 ASN A 304 VAL A 310 1 7 HELIX 9 AA9 ALA A 353 ASN A 358 1 6 HELIX 10 AB1 VAL A 375 ALA A 380 1 6 HELIX 11 AB2 LYS A 386 LYS A 394 5 9 HELIX 12 AB3 ASP A 395 HIS A 410 1 16 HELIX 13 AB4 THR A 415 SER A 431 1 17 HELIX 14 AB5 SER A 437 LYS A 442 5 6 HELIX 15 AB6 GLN A 451 ILE A 453 5 3 HELIX 16 AB7 ALA A 493 MET A 498 1 6 HELIX 17 AB8 SER A 533 GLU A 535 5 3 HELIX 18 AB9 ALA A 563 ILE A 567 5 5 HELIX 19 AC1 VAL A 578 GLY A 587 1 10 HELIX 20 AC2 LEU A 618 GLY A 628 1 11 HELIX 21 AC3 ILE A 629 ILE A 632 5 4 HELIX 22 AC4 VAL X 259 ASN X 272 1 14 HELIX 23 AC5 ALA X 275 TYR X 287 1 13 HELIX 24 AC6 GLN X 289 ASN X 297 1 9 HELIX 25 AC7 ASN X 297 ALA X 308 1 12 SHEET 1 AA1 2 ILE A 216 THR A 217 0 SHEET 2 AA1 2 HIS A 259 GLY A 260 1 O GLY A 260 N ILE A 216 SHEET 1 AA2 6 THR A 337 GLU A 339 0 SHEET 2 AA2 6 LYS A 326 ASP A 331 -1 N THR A 329 O GLU A 339 SHEET 3 AA2 6 PHE A 315 ASP A 321 -1 N VAL A 319 O ILE A 328 SHEET 4 AA2 6 ALA A 280 CYS A 286 -1 N ILE A 283 O TRP A 316 SHEET 5 AA2 6 TYR A 362 TYR A 366 -1 O ILE A 364 N MET A 284 SHEET 6 AA2 6 CYS A 372 ASP A 374 -1 O ARG A 373 N ALA A 365 SHEET 1 AA3 3 TYR A 447 LEU A 449 0 SHEET 2 AA3 3 VAL A 478 ALA A 483 -1 O TYR A 482 N VAL A 448 SHEET 3 AA3 3 GLY A 467 LYS A 470 -1 N GLY A 467 O VAL A 481 SHEET 1 AA4 2 GLN A 457 VAL A 459 0 SHEET 2 AA4 2 ILE A 487 ASP A 489 -1 O ALA A 488 N ILE A 458 SHEET 1 AA5 3 LYS A 491 SER A 492 0 SHEET 2 AA5 3 GLU A 527 TYR A 532 -1 O TYR A 532 N LYS A 491 SHEET 3 AA5 3 LYS A 511 ARG A 515 -1 N LYS A 511 O LEU A 531 SHEET 1 AA6 2 ARG A 501 LEU A 503 0 SHEET 2 AA6 2 THR A 537 LEU A 539 -1 O GLU A 538 N ILE A 502 SHEET 1 AA7 4 ILE A 559 GLU A 560 0 SHEET 2 AA7 4 PRO A 592 VAL A 594 1 O PRO A 592 N ILE A 559 SHEET 3 AA7 4 LEU A 609 ALA A 615 -1 O GLY A 611 N ALA A 593 SHEET 4 AA7 4 CYS A 571 GLU A 575 -1 N VAL A 574 O ILE A 612 SHEET 1 AA8 2 LYS A 598 PHE A 599 0 SHEET 2 AA8 2 VAL A 605 LYS A 606 -1 O LYS A 606 N LYS A 598 SSBOND 1 CYS A 131 G47 W 8 1555 1555 2.05 LINK O3' DC W 7 P G47 W 8 1555 1555 1.60 LINK O3' G47 W 8 P DA W 9 1555 1555 1.63 CRYST1 79.405 79.405 404.366 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012594 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002473 0.00000