HEADER HYDROLASE 19-JUL-14 4U3D TITLE LPXC FROM A.AAEOLICUS IN COMPLEX WITH 4-[[4-[2-[4-(MORPHOLINOMETHYL) TITLE 2 PHENYL]ETHYNYL]PHENOXY]METHYL]TETRAHYDROPYRAN-4-CARBOHYDROXAMIC ACID TITLE 3 (COMPOUND 9) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE COMPND 3 DEACETYLASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: UDP-3-O-ACYL-GLCNAC DEACETYLASE; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: LPXC, ENVA, AQ_1772; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ANTIBACTERIAL, LPXC, GRAM NEGATIVE BACTERIA, MMP, HYDROPHOBE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.B.OLIVIER REVDAT 4 20-DEC-23 4U3D 1 REMARK REVDAT 3 10-DEC-14 4U3D 1 JRNL REVDAT 2 15-OCT-14 4U3D 1 JRNL REVDAT 1 01-OCT-14 4U3D 0 JRNL AUTH K.E.MURPHY-BENENATO,N.OLIVIER,A.CHOY,P.L.ROSS,M.D.MILLER, JRNL AUTH 2 J.THRESHER,N.GAO,M.R.HALE JRNL TITL SYNTHESIS, STRUCTURE, AND SAR OF TETRAHYDROPYRAN-BASED LPXC JRNL TITL 2 INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 5 1213 2014 JRNL REFN ISSN 1948-5875 JRNL PMID 25408833 JRNL DOI 10.1021/ML500210X REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 88205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4427 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.87 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 6385 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1840 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6066 REMARK 3 BIN R VALUE (WORKING SET) : 0.1831 REMARK 3 BIN FREE R VALUE : 0.2009 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 319 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2141 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 377 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.24850 REMARK 3 B22 (A**2) : 1.24850 REMARK 3 B33 (A**2) : -2.49690 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.121 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.038 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.038 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.037 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.037 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2323 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3147 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 849 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 58 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 358 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2323 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 289 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3102 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.66 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.87 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202734. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89070 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.246 REMARK 200 RESOLUTION RANGE LOW (A) : 133.282 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : 0.53700 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2GO4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 25 MM TRIS-HCL, PH REMARK 280 8.0, 0.15 M NACL, 0.1 MM ZNSO4, 5% GLYCEROL, 1 MM INHIBITOR. REMARK 280 WELL SOLUTION: 15% PEG 550 MME, 15% PEG 20K, 50 MM IMIDAZOLE AND REMARK 280 50 MM MES (MORPHEUS BUFFER 1), PH 6.5, 2% 1,6-HEXANEDIOL; 2% 1- REMARK 280 BUTANOL 1,2-PROPANEDIOL (RACEMIC); 2% 2-PROPANOL; 2% 1,4- REMARK 280 BUTANEDIOL; 2% 1,3-PROPANEDIOL, PH 6.4, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.42733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.85467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.64100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 111.06833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.21367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 269 REMARK 465 THR A 270 REMARK 465 ARG A 271 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 LYS A 268 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 119 CA CB CG CD NE CZ NH1 REMARK 480 ARG A 119 NH2 REMARK 480 LEU A 217 CA CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 6 -166.20 -129.53 REMARK 500 HIS A 58 -0.36 80.35 REMARK 500 THR A 71 60.41 64.33 REMARK 500 LEU A 99 -129.47 54.81 REMARK 500 GLN A 117 -169.10 -113.68 REMARK 500 ASP A 134 118.06 -160.00 REMARK 500 GLU A 135 61.08 38.96 REMARK 500 LYS A 156 36.44 -92.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 711 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 714 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH A 765 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 766 DISTANCE = 6.40 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 58 NE2 REMARK 620 2 HIS A 188 NE2 114.8 REMARK 620 3 IMD A 301 N1 109.1 102.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 74 NE2 REMARK 620 2 HIS A 74 NE2 14.3 REMARK 620 3 HIS A 226 NE2 92.9 107.2 REMARK 620 4 ASP A 230 OD1 100.1 96.9 96.2 REMARK 620 5 3BX A 305 O31 119.6 119.1 91.2 139.2 REMARK 620 6 3BX A 305 O33 104.5 90.5 161.5 87.0 74.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3BX A 305 DBREF 4U3D A 1 271 UNP O67648 LPXC_AQUAE 1 271 SEQADV 4U3D ALA A 181 UNP O67648 CYS 181 CONFLICT SEQRES 1 A 271 MET GLY LEU GLU LYS THR VAL LYS GLU LYS LEU SER PHE SEQRES 2 A 271 GLU GLY VAL GLY ILE HIS THR GLY GLU TYR SER LYS LEU SEQRES 3 A 271 ILE ILE HIS PRO GLU LYS GLU GLY THR GLY ILE ARG PHE SEQRES 4 A 271 PHE LYS ASN GLY VAL TYR ILE PRO ALA ARG HIS GLU PHE SEQRES 5 A 271 VAL VAL HIS THR ASN HIS SER THR ASP LEU GLY PHE LYS SEQRES 6 A 271 GLY GLN ARG ILE LYS THR VAL GLU HIS ILE LEU SER VAL SEQRES 7 A 271 LEU HIS LEU LEU GLU ILE THR ASN VAL THR ILE GLU VAL SEQRES 8 A 271 ILE GLY ASN GLU ILE PRO ILE LEU ASP GLY SER GLY TRP SEQRES 9 A 271 GLU PHE TYR GLU ALA ILE ARG LYS ASN ILE LEU ASN GLN SEQRES 10 A 271 ASN ARG GLU ILE ASP TYR PHE VAL VAL GLU GLU PRO ILE SEQRES 11 A 271 ILE VAL GLU ASP GLU GLY ARG LEU ILE LYS ALA GLU PRO SEQRES 12 A 271 SER ASP THR LEU GLU VAL THR TYR GLU GLY GLU PHE LYS SEQRES 13 A 271 ASN PHE LEU GLY ARG GLN LYS PHE THR PHE VAL GLU GLY SEQRES 14 A 271 ASN GLU GLU GLU ILE VAL LEU ALA ARG THR PHE ALA PHE SEQRES 15 A 271 ASP TRP GLU ILE GLU HIS ILE LYS LYS VAL GLY LEU GLY SEQRES 16 A 271 LYS GLY GLY SER LEU LYS ASN THR LEU VAL LEU GLY LYS SEQRES 17 A 271 ASP LYS VAL TYR ASN PRO GLU GLY LEU ARG TYR GLU ASN SEQRES 18 A 271 GLU PRO VAL ARG HIS LYS VAL PHE ASP LEU ILE GLY ASP SEQRES 19 A 271 LEU TYR LEU LEU GLY SER PRO VAL LYS GLY LYS PHE TYR SEQRES 20 A 271 SER PHE ARG GLY GLY HIS SER LEU ASN VAL LYS LEU VAL SEQRES 21 A 271 LYS GLU LEU ALA LYS LYS GLN LYS LEU THR ARG HET IMD A 301 5 HET ZN A 302 1 HET ZN A 303 1 HET CL A 304 1 HET 3BX A 305 33 HETNAM IMD IMIDAZOLE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM 3BX N-HYDROXY-4-[(4-{[4-(MORPHOLIN-4-YLMETHYL) HETNAM 2 3BX PHENYL]ETHYNYL}PHENOXY)METHYL]TETRAHYDRO-2H-PYRAN-4- HETNAM 3 3BX CARBOXAMIDE FORMUL 2 IMD C3 H5 N2 1+ FORMUL 3 ZN 2(ZN 2+) FORMUL 5 CL CL 1- FORMUL 6 3BX C26 H30 N2 O5 FORMUL 7 HOH *377(H2 O) HELIX 1 AA1 ARG A 49 GLU A 51 5 3 HELIX 2 AA2 VAL A 72 GLU A 83 1 12 HELIX 3 AA3 GLY A 103 LYS A 112 1 10 HELIX 4 AA4 ASN A 170 ILE A 174 5 5 HELIX 5 AA5 GLU A 185 VAL A 192 1 8 HELIX 6 AA6 ASN A 221 TYR A 236 1 16 HELIX 7 AA7 LEU A 237 GLY A 239 5 3 HELIX 8 AA8 GLY A 252 LYS A 268 1 17 SHEET 1 AA1 2 LEU A 3 VAL A 7 0 SHEET 2 AA1 2 ILE A 114 GLU A 120 -1 O ARG A 119 N GLU A 4 SHEET 1 AA2 5 LEU A 11 VAL A 16 0 SHEET 2 AA2 5 TYR A 23 PRO A 30 -1 O ILE A 28 N LEU A 11 SHEET 3 AA2 5 VAL A 87 ILE A 92 -1 O THR A 88 N HIS A 29 SHEET 4 AA2 5 ILE A 37 LYS A 41 1 N ARG A 38 O ILE A 89 SHEET 5 AA2 5 VAL A 44 PRO A 47 -1 O ILE A 46 N PHE A 39 SHEET 1 AA3 3 VAL A 53 HIS A 55 0 SHEET 2 AA3 3 ASP A 61 PHE A 64 -1 O ASP A 61 N VAL A 54 SHEET 3 AA3 3 GLN A 67 ILE A 69 -1 O ILE A 69 N LEU A 62 SHEET 1 AA4 2 PHE A 124 VAL A 125 0 SHEET 2 AA4 2 VAL A 242 LYS A 243 1 O LYS A 243 N PHE A 124 SHEET 1 AA5 5 ILE A 130 ASP A 134 0 SHEET 2 AA5 5 ARG A 137 GLU A 142 -1 O ALA A 141 N ILE A 130 SHEET 3 AA5 5 LYS A 245 PHE A 249 -1 O PHE A 249 N LEU A 138 SHEET 4 AA5 5 GLU A 148 GLU A 154 1 N GLU A 148 O PHE A 246 SHEET 5 AA5 5 ARG A 161 VAL A 167 -1 O PHE A 166 N VAL A 149 SHEET 1 AA6 2 PHE A 180 PHE A 182 0 SHEET 2 AA6 2 LEU A 204 LEU A 206 1 O LEU A 206 N ALA A 181 LINK NE2 HIS A 58 ZN ZN A 303 1555 1555 2.02 LINK NE2AHIS A 74 ZN ZN A 302 1555 1555 2.19 LINK NE2BHIS A 74 ZN ZN A 302 1555 1555 1.96 LINK NE2 HIS A 188 ZN ZN A 303 1555 1555 1.98 LINK NE2 HIS A 226 ZN ZN A 302 1555 1555 2.07 LINK OD1 ASP A 230 ZN ZN A 302 1555 1555 2.03 LINK N1 IMD A 301 ZN ZN A 303 1555 1555 2.06 LINK ZN ZN A 302 O31 3BX A 305 1555 1555 2.07 LINK ZN ZN A 302 O33 3BX A 305 1555 1555 2.16 SITE 1 AC1 6 ASN A 57 HIS A 58 PHE A 158 HIS A 188 SITE 2 AC1 6 ZN A 303 CL A 304 SITE 1 AC2 4 HIS A 74 HIS A 226 ASP A 230 3BX A 305 SITE 1 AC3 4 HIS A 58 HIS A 188 IMD A 301 CL A 304 SITE 1 AC4 7 ASN A 57 HIS A 58 PHE A 158 HIS A 188 SITE 2 AC4 7 IMD A 301 ZN A 303 HOH A 469 SITE 1 AC5 20 ILE A 18 HIS A 58 GLU A 73 HIS A 74 SITE 2 AC5 20 THR A 179 PHE A 180 ILE A 189 GLY A 198 SITE 3 AC5 20 SER A 199 THR A 203 VAL A 205 TYR A 212 SITE 4 AC5 20 HIS A 226 LYS A 227 ASP A 230 HIS A 253 SITE 5 AC5 20 ZN A 302 HOH A 475 HOH A 527 HOH A 735 CRYST1 65.865 65.865 133.282 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015183 0.008766 0.000000 0.00000 SCALE2 0.000000 0.017531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007503 0.00000