HEADER LYASE 23-JUL-14 4U49 TITLE CRYSTAL STRUCTURE OF PECTATE LYASE PEL3 FROM PECTOBACTERIUM TITLE 2 CAROTOVORUM WITH TWO MONOMERS IN THE A.U COMPND MOL_ID: 1; COMPND 2 MOLECULE: PECTATE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTOBACTERIUM CAROTOVORUM; SOURCE 3 ORGANISM_TAXID: 554; SOURCE 4 GENE: PEL-3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS PROTEIN SECRETION, BACTERIAL PATHOGENESIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR L.BALLUT,P.GOUET,V.SHEVCHIK REVDAT 3 31-JAN-24 4U49 1 REMARK REVDAT 2 06-SEP-17 4U49 1 REMARK SHEET LINK SITE REVDAT 2 2 1 ATOM REVDAT 1 05-AUG-15 4U49 0 JRNL AUTH L.BALLUT,P.GOUET,V.E.SHEVCHIK,C.PINEAU,N.GUSCHINSKAYA JRNL TITL CRYSTAL STRUCTURE OF PECTATE LYASE PEL3 FROM PECTOBACTERIUM JRNL TITL 2 CAROTOVORUM WITH ONE MONOMER IN THE A.U JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 52403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6608 - 4.7953 0.99 2697 128 0.1694 0.2110 REMARK 3 2 4.7953 - 3.8076 0.99 2633 155 0.1416 0.1685 REMARK 3 3 3.8076 - 3.3267 1.00 2653 138 0.1551 0.1939 REMARK 3 4 3.3267 - 3.0227 1.00 2612 149 0.1708 0.1962 REMARK 3 5 3.0227 - 2.8061 1.00 2615 159 0.1866 0.2116 REMARK 3 6 2.8061 - 2.6407 1.00 2626 142 0.1881 0.2302 REMARK 3 7 2.6407 - 2.5085 1.00 2643 125 0.1880 0.2001 REMARK 3 8 2.5085 - 2.3993 1.00 2611 147 0.1941 0.2365 REMARK 3 9 2.3993 - 2.3070 1.00 2617 142 0.1858 0.2520 REMARK 3 10 2.3070 - 2.2274 1.00 2607 136 0.1858 0.2301 REMARK 3 11 2.2274 - 2.1578 1.00 2659 133 0.1779 0.2203 REMARK 3 12 2.1578 - 2.0961 1.00 2616 133 0.1850 0.2096 REMARK 3 13 2.0961 - 2.0409 1.00 2632 140 0.1845 0.2241 REMARK 3 14 2.0409 - 1.9911 1.00 2624 139 0.1957 0.2313 REMARK 3 15 1.9911 - 1.9459 1.00 2582 140 0.2023 0.2486 REMARK 3 16 1.9459 - 1.9045 1.00 2661 145 0.2106 0.2742 REMARK 3 17 1.9045 - 1.8664 1.00 2546 164 0.2226 0.2770 REMARK 3 18 1.8664 - 1.8311 1.00 2654 129 0.2383 0.2932 REMARK 3 19 1.8311 - 1.7984 0.94 2438 133 0.2579 0.2993 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4785 REMARK 3 ANGLE : 0.764 6461 REMARK 3 CHIRALITY : 0.028 731 REMARK 3 PLANARITY : 0.003 850 REMARK 3 DIHEDRAL : 10.836 1745 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U49 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52416 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 16.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 10.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.33 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3B4N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM ACETATE, 20% (W/V) REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 LYS A 3 REMARK 465 TYR A 4 REMARK 465 LEU A 5 REMARK 465 THR A 6 REMARK 465 PRO A 7 REMARK 465 ILE A 8 REMARK 465 PHE A 9 REMARK 465 LEU A 10 REMARK 465 CYS A 11 REMARK 465 THR A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 ILE A 15 REMARK 465 SER A 16 REMARK 465 PHE A 17 REMARK 465 GLN A 18 REMARK 465 ALA A 19 REMARK 465 GLN A 20 REMARK 465 ALA A 21 REMARK 465 SER A 56 REMARK 465 SER A 57 REMARK 465 ALA A 58 REMARK 465 GLN A 59 REMARK 465 PRO A 111 REMARK 465 LEU A 112 REMARK 465 ARG A 113 REMARK 465 ALA A 114 REMARK 465 ALA A 115 REMARK 465 PRO A 116 REMARK 465 LEU A 117 REMARK 465 LYS A 118 REMARK 465 GLY A 220 REMARK 465 PRO A 221 REMARK 465 GLY A 222 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 LYS B 3 REMARK 465 TYR B 4 REMARK 465 LEU B 5 REMARK 465 THR B 6 REMARK 465 PRO B 7 REMARK 465 ILE B 8 REMARK 465 PHE B 9 REMARK 465 LEU B 10 REMARK 465 CYS B 11 REMARK 465 THR B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 14 REMARK 465 ILE B 15 REMARK 465 SER B 16 REMARK 465 PHE B 17 REMARK 465 GLN B 18 REMARK 465 ALA B 19 REMARK 465 GLN B 20 REMARK 465 ALA B 21 REMARK 465 PRO B 111 REMARK 465 LEU B 112 REMARK 465 ARG B 113 REMARK 465 ALA B 114 REMARK 465 ALA B 115 REMARK 465 PRO B 116 REMARK 465 LEU B 117 REMARK 465 LYS B 118 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 ASP B 151 CG OD1 OD2 REMARK 470 LYS B 224 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 134 O HOH B 501 1.89 REMARK 500 O HOH A 454 O HOH A 607 1.95 REMARK 500 O HOH A 710 O HOH A 735 1.97 REMARK 500 O HOH B 541 O HOH B 818 1.99 REMARK 500 O HOH A 445 O HOH A 497 1.99 REMARK 500 O HOH B 685 O HOH B 776 2.01 REMARK 500 O THR B 41 O HOH B 502 2.01 REMARK 500 O HOH A 528 O HOH A 572 2.04 REMARK 500 O ALA B 119 O HOH B 503 2.07 REMARK 500 O HOH A 708 O HOH A 748 2.12 REMARK 500 O HOH B 532 O HOH B 830 2.13 REMARK 500 O HOH A 587 O HOH A 681 2.15 REMARK 500 NH2 ARG B 186 O HOH B 504 2.16 REMARK 500 O ALA B 108 O HOH B 505 2.17 REMARK 500 O HOH A 500 O HOH A 723 2.18 REMARK 500 O HOH B 763 O HOH B 788 2.18 REMARK 500 OD2 ASP A 42 O HOH A 401 2.19 REMARK 500 O HOH A 554 O HOH A 646 2.19 REMARK 500 O HOH B 501 O HOH B 776 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 695 O HOH B 772 2545 1.90 REMARK 500 O HOH A 586 O HOH A 734 2645 2.02 REMARK 500 O HOH B 511 O HOH B 523 2646 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 69 -173.66 -67.69 REMARK 500 LEU A 144 -105.39 -108.21 REMARK 500 SER A 175 -124.25 45.95 REMARK 500 ASP A 194 107.85 -166.29 REMARK 500 CYS A 196 -90.88 -89.73 REMARK 500 GLN A 231 85.22 -155.86 REMARK 500 ASP A 259 31.37 -143.87 REMARK 500 ILE A 283 -74.27 -95.80 REMARK 500 VAL A 311 -71.29 -90.29 REMARK 500 ASN B 69 -173.55 -69.30 REMARK 500 LEU B 144 -113.14 -108.43 REMARK 500 SER B 175 -120.61 47.38 REMARK 500 ASP B 194 107.96 -165.27 REMARK 500 CYS B 196 -91.58 -88.93 REMARK 500 GLU B 197 -72.45 -84.61 REMARK 500 LYS B 205 -95.92 -91.70 REMARK 500 ASP B 226 -79.63 -95.24 REMARK 500 ASP B 259 40.67 -148.68 REMARK 500 ILE B 283 -60.13 -98.17 REMARK 500 VAL B 311 -77.56 -95.00 REMARK 500 LYS B 322 58.56 -109.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 806 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 807 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 808 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 809 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH B 860 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B 861 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B 862 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B 863 DISTANCE = 7.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 194 OD2 REMARK 620 2 ILE B 195 O 84.9 REMARK 620 3 ASN B 216 OD1 114.6 82.8 REMARK 620 4 PRO B 221 O 82.4 77.9 153.0 REMARK 620 5 HOH B 513 O 153.4 116.0 85.6 86.1 REMARK 620 6 HOH B 641 O 141.3 56.7 68.5 85.1 60.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 401 DBREF 4U49 A 1 347 UNP Q47465 Q47465_PECCA 1 347 DBREF 4U49 B 1 347 UNP Q47465 Q47465_PECCA 1 347 SEQADV 4U49 ASN A 243 UNP Q47465 LYS 243 CONFLICT SEQADV 4U49 ASN B 243 UNP Q47465 LYS 243 CONFLICT SEQRES 1 A 347 MET PHE LYS TYR LEU THR PRO ILE PHE LEU CYS THR ALA SEQRES 2 A 347 ALA ILE SER PHE GLN ALA GLN ALA ASP ASP THR MET LEU SEQRES 3 A 347 MET LEU LEU LYS LYS ASP ASN ALA THR TYR LEU SER TRP SEQRES 4 A 347 SER THR ASP ALA GLY ASN VAL VAL ARG GLN ASP VAL TYR SEQRES 5 A 347 ARG SER THR SER SER ALA GLN ALA GLY SER GLU LYS ILE SEQRES 6 A 347 ALA GLU LEU ASN SER SER ASP ARG THR PHE THR ASP LEU SEQRES 7 A 347 THR ALA ASN PRO GLN SER ASP TYR TRP TYR TRP VAL ASP SEQRES 8 A 347 THR VAL SER GLY ASN ASN SER VAL LEU LYS SER ASN ALA SEQRES 9 A 347 ALA SER THR ALA PRO ALA PRO LEU ARG ALA ALA PRO LEU SEQRES 10 A 347 LYS ALA ALA SER PRO GLU CYS LYS ALA GLY ALA VAL ILE SEQRES 11 A 347 LYS ASP LYS THR VAL ASP CYS GLY GLY ILE THR LEU GLY SEQRES 12 A 347 LEU SER CYS SER GLY ASP SER ASP LYS GLN PRO PRO VAL SEQRES 13 A 347 ILE THR LEU GLU ASN ALA THR ILE LYS ASN LEU ARG ILE SEQRES 14 A 347 SER GLU LYS GLY GLY SER ASP GLY ILE HIS CYS LYS SER SEQRES 15 A 347 GLY ASN CYS ARG ILE GLU ASN VAL ILE TRP GLU ASP ILE SEQRES 16 A 347 CYS GLU ASP ALA ALA THR ASN LEU GLY LYS THR MET THR SEQRES 17 A 347 ILE VAL GLY GLY VAL ALA HIS ASN THR THR ASN GLY PRO SEQRES 18 A 347 GLY GLY LYS PRO ASP LYS VAL LEU GLN GLN ASN ALA LYS SEQRES 19 A 347 ASN SER HIS THR ILE VAL GLN GLY ASN PHE THR LEU THR SEQRES 20 A 347 GLY GLN HIS GLY LYS LEU TRP ARG SER CYS GLY ASP CYS SEQRES 21 A 347 THR ASN ASN GLY GLY PRO ARG ASN LEU THR ILE ILE SER SEQRES 22 A 347 ALA THR VAL ASN GLY THR ILE ASP SER ILE ALA GLY VAL SEQRES 23 A 347 ASN ARG ASN PHE GLY ASP VAL ALA GLU ILE ARG ASP LEU SEQRES 24 A 347 ARG ILE LYS GLY TYR LYS GLU GLY LYS PRO PRO VAL CYS SEQRES 25 A 347 GLU GLU PHE ASN GLY VAL GLU LYS GLY LYS GLY LYS SER SEQRES 26 A 347 ASP LYS TYR GLY GLU PHE TRP ASP THR LYS ASN CYS LYS SEQRES 27 A 347 VAL SER ARG SER ASN VAL LYS PRO LEU SEQRES 1 B 347 MET PHE LYS TYR LEU THR PRO ILE PHE LEU CYS THR ALA SEQRES 2 B 347 ALA ILE SER PHE GLN ALA GLN ALA ASP ASP THR MET LEU SEQRES 3 B 347 MET LEU LEU LYS LYS ASP ASN ALA THR TYR LEU SER TRP SEQRES 4 B 347 SER THR ASP ALA GLY ASN VAL VAL ARG GLN ASP VAL TYR SEQRES 5 B 347 ARG SER THR SER SER ALA GLN ALA GLY SER GLU LYS ILE SEQRES 6 B 347 ALA GLU LEU ASN SER SER ASP ARG THR PHE THR ASP LEU SEQRES 7 B 347 THR ALA ASN PRO GLN SER ASP TYR TRP TYR TRP VAL ASP SEQRES 8 B 347 THR VAL SER GLY ASN ASN SER VAL LEU LYS SER ASN ALA SEQRES 9 B 347 ALA SER THR ALA PRO ALA PRO LEU ARG ALA ALA PRO LEU SEQRES 10 B 347 LYS ALA ALA SER PRO GLU CYS LYS ALA GLY ALA VAL ILE SEQRES 11 B 347 LYS ASP LYS THR VAL ASP CYS GLY GLY ILE THR LEU GLY SEQRES 12 B 347 LEU SER CYS SER GLY ASP SER ASP LYS GLN PRO PRO VAL SEQRES 13 B 347 ILE THR LEU GLU ASN ALA THR ILE LYS ASN LEU ARG ILE SEQRES 14 B 347 SER GLU LYS GLY GLY SER ASP GLY ILE HIS CYS LYS SER SEQRES 15 B 347 GLY ASN CYS ARG ILE GLU ASN VAL ILE TRP GLU ASP ILE SEQRES 16 B 347 CYS GLU ASP ALA ALA THR ASN LEU GLY LYS THR MET THR SEQRES 17 B 347 ILE VAL GLY GLY VAL ALA HIS ASN THR THR ASN GLY PRO SEQRES 18 B 347 GLY GLY LYS PRO ASP LYS VAL LEU GLN GLN ASN ALA LYS SEQRES 19 B 347 ASN SER HIS THR ILE VAL GLN GLY ASN PHE THR LEU THR SEQRES 20 B 347 GLY GLN HIS GLY LYS LEU TRP ARG SER CYS GLY ASP CYS SEQRES 21 B 347 THR ASN ASN GLY GLY PRO ARG ASN LEU THR ILE ILE SER SEQRES 22 B 347 ALA THR VAL ASN GLY THR ILE ASP SER ILE ALA GLY VAL SEQRES 23 B 347 ASN ARG ASN PHE GLY ASP VAL ALA GLU ILE ARG ASP LEU SEQRES 24 B 347 ARG ILE LYS GLY TYR LYS GLU GLY LYS PRO PRO VAL CYS SEQRES 25 B 347 GLU GLU PHE ASN GLY VAL GLU LYS GLY LYS GLY LYS SER SEQRES 26 B 347 ASP LYS TYR GLY GLU PHE TRP ASP THR LYS ASN CYS LYS SEQRES 27 B 347 VAL SER ARG SER ASN VAL LYS PRO LEU HET CA B 401 1 HETNAM CA CALCIUM ION FORMUL 3 CA CA 2+ FORMUL 4 HOH *772(H2 O) HELIX 1 AA1 ASN A 289 GLY A 291 5 3 HELIX 2 AA2 SER A 340 SER A 342 5 3 HELIX 3 AA3 ALA B 58 SER B 62 5 5 HELIX 4 AA4 ASN B 289 GLY B 291 5 3 HELIX 5 AA5 SER B 340 SER B 342 5 3 SHEET 1 A 3 THR A 24 LYS A 31 0 SHEET 2 A 3 ALA A 34 THR A 41 -1 SHEET 3 A 3 THR A 74 ASP A 77 -1 SHEET 1 B 4 VAL A 99 LYS A 101 0 SHEET 2 B 4 TYR A 88 SER A 94 -1 SHEET 3 B 4 VAL A 46 SER A 54 -1 SHEET 4 B 4 SER A 62 LEU A 68 -1 SHEET 1 C 4 ALA A 128 LYS A 131 0 SHEET 2 C 4 ILE A 157 GLU A 160 1 SHEET 3 C 4 ILE A 178 SER A 182 1 SHEET 4 C 4 ALA A 200 ASN A 202 1 SHEET 1 D 7 THR A 134 ASP A 136 0 SHEET 2 D 7 THR A 163 LYS A 165 1 SHEET 3 D 7 ASN A 184 GLU A 188 1 SHEET 4 D 7 THR A 206 VAL A 210 1 SHEET 5 D 7 SER A 236 GLN A 241 1 SHEET 6 D 7 ARG A 267 ILE A 271 1 SHEET 7 D 7 ALA A 294 ILE A 296 1 SHEET 1 E 2 LEU A 167 ILE A 169 0 SHEET 2 E 2 VAL A 190 TRP A 192 1 SHEET 1 F 4 VAL A 213 ASN A 216 0 SHEET 2 F 4 PHE A 244 GLN A 249 1 SHEET 3 F 4 ALA A 274 THR A 279 1 SHEET 4 F 4 LEU A 299 ILE A 301 1 SHEET 1 G 3 ALA A 284 ASN A 287 0 SHEET 2 G 3 CYS A 312 PHE A 315 1 SHEET 3 G 3 LYS A 327 GLU A 330 -1 SHEET 1 H 3 THR B 24 LYS B 31 0 SHEET 2 H 3 ALA B 34 THR B 41 -1 SHEET 3 H 3 THR B 74 ASP B 77 -1 SHEET 1 I 4 VAL B 99 LYS B 101 0 SHEET 2 I 4 TRP B 87 SER B 94 -1 SHEET 3 I 4 VAL B 46 SER B 54 -1 SHEET 4 I 4 GLU B 63 LEU B 68 -1 SHEET 1 J 6 ALA B 128 LYS B 131 0 SHEET 2 J 6 ILE B 157 GLU B 160 1 SHEET 3 J 6 ILE B 178 SER B 182 1 SHEET 4 J 6 ALA B 200 ASN B 202 1 SHEET 5 J 6 LEU B 229 GLN B 231 1 SHEET 6 J 6 TRP B 254 SER B 256 1 SHEET 1 K 7 THR B 134 ASP B 136 0 SHEET 2 K 7 THR B 163 LYS B 165 1 SHEET 3 K 7 CYS B 185 GLU B 188 1 SHEET 4 K 7 THR B 206 VAL B 210 1 SHEET 5 K 7 SER B 236 GLN B 241 1 SHEET 6 K 7 ARG B 267 ILE B 271 1 SHEET 7 K 7 ALA B 294 ILE B 296 1 SHEET 1 L 2 LEU B 167 ILE B 169 0 SHEET 2 L 2 VAL B 190 TRP B 192 1 SHEET 1 M 5 VAL B 213 ASN B 216 0 SHEET 2 M 5 PHE B 244 HIS B 250 1 SHEET 3 M 5 ALA B 274 ILE B 280 1 SHEET 4 M 5 LEU B 299 ILE B 301 1 SHEET 5 M 5 VAL B 344 PRO B 346 1 SHEET 1 N 3 ALA B 284 ASN B 287 0 SHEET 2 N 3 CYS B 312 PHE B 315 1 SHEET 3 N 3 LYS B 327 GLU B 330 -1 SSBOND 1 CYS A 124 CYS A 137 1555 1555 2.03 SSBOND 2 CYS A 146 CYS A 196 1555 1555 2.03 SSBOND 3 CYS A 180 CYS A 185 1555 1555 2.03 SSBOND 4 CYS A 257 CYS A 260 1555 1555 2.03 SSBOND 5 CYS A 312 CYS A 337 1555 1555 2.03 SSBOND 6 CYS B 124 CYS B 137 1555 1555 2.04 SSBOND 7 CYS B 146 CYS B 196 1555 1555 2.04 SSBOND 8 CYS B 180 CYS B 185 1555 1555 2.04 SSBOND 9 CYS B 257 CYS B 260 1555 1555 2.03 SSBOND 10 CYS B 312 CYS B 337 1555 1555 2.04 LINK OD2 ASP B 194 CA CA B 401 1555 1555 2.54 LINK O ILE B 195 CA CA B 401 1555 1555 2.64 LINK OD1 ASN B 216 CA CA B 401 1555 1555 2.42 LINK O PRO B 221 CA CA B 401 1555 1555 2.47 LINK CA CA B 401 O HOH B 513 1555 1555 2.54 LINK CA CA B 401 O HOH B 641 1555 1555 3.18 CISPEP 1 GLY A 265 PRO A 266 0 -0.19 CISPEP 2 LYS A 308 PRO A 309 0 -0.21 CISPEP 3 GLY B 265 PRO B 266 0 1.00 CISPEP 4 LYS B 308 PRO B 309 0 -0.02 SITE 1 AC1 5 ASP B 194 ILE B 195 ASN B 216 PRO B 221 SITE 2 AC1 5 HOH B 513 CRYST1 48.600 72.000 83.700 90.00 101.30 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020576 0.000000 0.004112 0.00000 SCALE2 0.000000 0.013889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012184 0.00000