HEADER LIGASE 25-JUL-14 4U5Q TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF REDUCTASE (R) DOMAIN OF TITLE 2 NONRIBOSOMAL PEPTIDE SYNTHETASE FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2056-2512; COMPND 5 SYNONYM: PROBABLE PEPTIDE SYNTHETASE NRP (PEPTIDE SYNTHASE); COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: NRP, RV0101, LH57_00575; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS NONRIBOSOMAL PEPTIDE SYNTHETASE, OXIDOREDUCTASE, SHORT-CHAIN KEYWDS 2 DEHYDROGENASE/REDUCTASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.D.PATEL,A.S.HAQUE,K.PRIYADARSHAN,R.SANKARANARAYANAN REVDAT 2 08-NOV-23 4U5Q 1 REMARK REVDAT 1 13-JAN-16 4U5Q 0 JRNL AUTH K.D.PATEL,A.S.HAQUE,R.SANKARANARAYANAN JRNL TITL HIGH RESOLUTION STRUCTURE OF R-DOMAIN OF NONRIBOSOMAL JRNL TITL 2 PEPTIDE SYNTHETASE FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.CHHABRA,A.S.HAQUE,R.K.PAL,A.GOYAL,R.RAI,S.JOSHI, REMARK 1 AUTH 2 S.PANJIKAR,S.PASHA,R.SANKARANARAYANAN,R.S.GOKHALE REMARK 1 TITL NONPROCESSIVE [2 + 2]E- OFF-LOADING REDUCTASE DOMAINS FROM REMARK 1 TITL 2 MYCOBACTERIAL NONRIBOSOMAL PEPTIDE SYNTHETASES. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 109 5681 2012 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 22451903 REMARK 1 DOI 10.1073/PNAS.1118680109 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 80071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 4024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9975 - 5.5595 0.99 2793 169 0.1938 0.2208 REMARK 3 2 5.5595 - 4.4141 0.99 2695 163 0.1863 0.2041 REMARK 3 3 4.4141 - 3.8566 0.99 2667 152 0.1677 0.1843 REMARK 3 4 3.8566 - 3.5041 0.99 2667 140 0.1812 0.2407 REMARK 3 5 3.5041 - 3.2531 1.00 2668 147 0.1892 0.2720 REMARK 3 6 3.2531 - 3.0613 1.00 2651 126 0.2101 0.2674 REMARK 3 7 3.0613 - 2.9080 0.99 2641 130 0.2201 0.2582 REMARK 3 8 2.9080 - 2.7815 0.99 2645 134 0.2185 0.2840 REMARK 3 9 2.7815 - 2.6744 1.00 2645 133 0.2232 0.2990 REMARK 3 10 2.6744 - 2.5821 1.00 2617 135 0.2257 0.2538 REMARK 3 11 2.5821 - 2.5014 1.00 2653 136 0.2138 0.2648 REMARK 3 12 2.5014 - 2.4299 1.00 2598 151 0.2074 0.2558 REMARK 3 13 2.4299 - 2.3660 1.00 2621 126 0.2007 0.2406 REMARK 3 14 2.3660 - 2.3082 1.00 2620 157 0.1953 0.2440 REMARK 3 15 2.3082 - 2.2558 0.99 2601 135 0.2077 0.2587 REMARK 3 16 2.2558 - 2.2078 1.00 2627 137 0.2195 0.2498 REMARK 3 17 2.2078 - 2.1636 1.00 2594 157 0.1970 0.2335 REMARK 3 18 2.1636 - 2.1228 1.00 2593 131 0.2003 0.2457 REMARK 3 19 2.1228 - 2.0849 1.00 2619 142 0.1967 0.2263 REMARK 3 20 2.0849 - 2.0495 1.00 2655 122 0.1949 0.2601 REMARK 3 21 2.0495 - 2.0165 1.00 2579 143 0.2016 0.2359 REMARK 3 22 2.0165 - 1.9854 1.00 2647 132 0.2118 0.2949 REMARK 3 23 1.9854 - 1.9562 1.00 2587 134 0.2160 0.2698 REMARK 3 24 1.9562 - 1.9287 1.00 2611 127 0.2373 0.2916 REMARK 3 25 1.9287 - 1.9026 1.00 2604 134 0.2601 0.3263 REMARK 3 26 1.9026 - 1.8779 1.00 2592 129 0.2397 0.3073 REMARK 3 27 1.8779 - 1.8544 1.00 2626 137 0.2521 0.2857 REMARK 3 28 1.8544 - 1.8321 1.00 2607 135 0.2463 0.3318 REMARK 3 29 1.8321 - 1.8108 0.90 2324 130 0.2448 0.2940 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6763 REMARK 3 ANGLE : 0.821 9197 REMARK 3 CHIRALITY : 0.051 1056 REMARK 3 PLANARITY : 0.005 1200 REMARK 3 DIHEDRAL : 11.301 4077 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000202778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : VARIMAX HF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80272 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 42.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 19.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4DQV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M HEPES PH 7.5, 25% REMARK 280 W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.26600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.03850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.29650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.03850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.26600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.29650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2035 REMARK 465 GLY A 2036 REMARK 465 SER A 2037 REMARK 465 SER A 2038 REMARK 465 HIS A 2039 REMARK 465 HIS A 2040 REMARK 465 HIS A 2041 REMARK 465 HIS A 2042 REMARK 465 HIS A 2043 REMARK 465 HIS A 2044 REMARK 465 SER A 2045 REMARK 465 SER A 2046 REMARK 465 GLY A 2047 REMARK 465 LEU A 2048 REMARK 465 VAL A 2049 REMARK 465 PRO A 2050 REMARK 465 ARG A 2051 REMARK 465 GLY A 2052 REMARK 465 SER A 2053 REMARK 465 HIS A 2054 REMARK 465 MET A 2055 REMARK 465 GLY A 2056 REMARK 465 ARG A 2057 REMARK 465 ASP A 2058 REMARK 465 ALA A 2059 REMARK 465 ARG A 2060 REMARK 465 PRO A 2061 REMARK 465 THR A 2062 REMARK 465 SER A 2063 REMARK 465 ASP A 2064 REMARK 465 PRO A 2065 REMARK 465 ARG A 2066 REMARK 465 LEU A 2067 REMARK 465 VAL A 2068 REMARK 465 SER A 2069 REMARK 465 VAL A 2070 REMARK 465 HIS A 2071 REMARK 465 GLY A 2072 REMARK 465 ASP A 2073 REMARK 465 ASN A 2074 REMARK 465 ALA A 2451 REMARK 465 SER A 2452 REMARK 465 ASN A 2453 REMARK 465 SER A 2454 REMARK 465 GLN A 2455 REMARK 465 ARG A 2456 REMARK 465 THR A 2463 REMARK 465 ARG A 2464 REMARK 465 GLY A 2465 REMARK 465 MET B 2035 REMARK 465 GLY B 2036 REMARK 465 SER B 2037 REMARK 465 SER B 2038 REMARK 465 HIS B 2039 REMARK 465 HIS B 2040 REMARK 465 HIS B 2041 REMARK 465 HIS B 2042 REMARK 465 HIS B 2043 REMARK 465 HIS B 2044 REMARK 465 SER B 2045 REMARK 465 SER B 2046 REMARK 465 GLY B 2047 REMARK 465 LEU B 2048 REMARK 465 VAL B 2049 REMARK 465 PRO B 2050 REMARK 465 ARG B 2051 REMARK 465 GLY B 2052 REMARK 465 SER B 2053 REMARK 465 HIS B 2054 REMARK 465 MET B 2055 REMARK 465 GLY B 2056 REMARK 465 ARG B 2057 REMARK 465 ASP B 2058 REMARK 465 ALA B 2059 REMARK 465 ARG B 2060 REMARK 465 PRO B 2061 REMARK 465 THR B 2062 REMARK 465 SER B 2063 REMARK 465 ASP B 2064 REMARK 465 PRO B 2065 REMARK 465 ARG B 2066 REMARK 465 LEU B 2067 REMARK 465 VAL B 2068 REMARK 465 SER B 2069 REMARK 465 VAL B 2070 REMARK 465 HIS B 2071 REMARK 465 GLY B 2072 REMARK 465 ASP B 2073 REMARK 465 ASN B 2074 REMARK 465 PRO B 2075 REMARK 465 GLY B 2277 REMARK 465 GLY B 2278 REMARK 465 ALA B 2451 REMARK 465 SER B 2452 REMARK 465 ASN B 2453 REMARK 465 SER B 2454 REMARK 465 GLN B 2455 REMARK 465 ARG B 2456 REMARK 465 GLY B 2465 REMARK 465 CYS B 2466 REMARK 465 LYS B 2486 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 2106 NH1 ARG A 2108 1.53 REMARK 500 CD GLU A 2106 NH1 ARG A 2108 2.01 REMARK 500 OD2 ASP B 2191 O HOH B 2701 2.07 REMARK 500 OD1 ASP B 2187 NH1 ARG B 2233 2.13 REMARK 500 NH2 ARG A 2151 O HOH A 2601 2.15 REMARK 500 OE1 GLU B 2106 O HOH B 2702 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A2216 30.08 -91.82 REMARK 500 THR A2238 -52.84 72.29 REMARK 500 SER A2247 -161.29 -119.28 REMARK 500 ALA A2254 33.03 -89.73 REMARK 500 CYS A2301 15.38 -141.05 REMARK 500 SER A2484 -75.19 -60.49 REMARK 500 PHE B2088 -31.59 -130.07 REMARK 500 ASP B2158 73.50 -102.18 REMARK 500 THR B2238 -53.59 71.50 REMARK 500 SER B2247 -161.68 -118.46 REMARK 500 ALA B2280 -20.02 74.48 REMARK 500 CYS B2301 18.12 -143.87 REMARK 500 ARG B2378 91.09 -68.56 REMARK 500 ASN B2488 51.10 -141.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XPE B 2601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DQV RELATED DB: PDB REMARK 900 APO PROTEIN IN A DIFFERENT CONFORMATION AT A RESOLUTION OF 2.3 REMARK 900 ANGSTROM. DBREF 4U5Q A 2056 2512 UNP Q10896 Q10896_MYCTU 2056 2512 DBREF 4U5Q B 2056 2512 UNP Q10896 Q10896_MYCTU 2056 2512 SEQADV 4U5Q MET A 2035 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q GLY A 2036 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q SER A 2037 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q SER A 2038 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q HIS A 2039 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q HIS A 2040 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q HIS A 2041 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q HIS A 2042 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q HIS A 2043 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q HIS A 2044 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q SER A 2045 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q SER A 2046 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q GLY A 2047 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q LEU A 2048 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q VAL A 2049 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q PRO A 2050 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q ARG A 2051 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q GLY A 2052 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q SER A 2053 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q HIS A 2054 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q MET A 2055 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q MET B 2035 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q GLY B 2036 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q SER B 2037 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q SER B 2038 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q HIS B 2039 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q HIS B 2040 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q HIS B 2041 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q HIS B 2042 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q HIS B 2043 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q HIS B 2044 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q SER B 2045 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q SER B 2046 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q GLY B 2047 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q LEU B 2048 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q VAL B 2049 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q PRO B 2050 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q ARG B 2051 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q GLY B 2052 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q SER B 2053 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q HIS B 2054 UNP Q10896 EXPRESSION TAG SEQADV 4U5Q MET B 2055 UNP Q10896 EXPRESSION TAG SEQRES 1 A 478 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 478 LEU VAL PRO ARG GLY SER HIS MET GLY ARG ASP ALA ARG SEQRES 3 A 478 PRO THR SER ASP PRO ARG LEU VAL SER VAL HIS GLY ASP SEQRES 4 A 478 ASN PRO THR GLU VAL HIS ALA SER ASP LEU THR LEU ASP SEQRES 5 A 478 ARG PHE ILE ASP ALA ASP THR LEU ALA THR ALA VAL ASN SEQRES 6 A 478 LEU PRO GLY PRO SER PRO GLU LEU ARG THR VAL LEU LEU SEQRES 7 A 478 THR GLY ALA THR GLY PHE LEU GLY ARG TYR LEU VAL LEU SEQRES 8 A 478 GLU LEU LEU ARG ARG LEU ASP VAL ASP GLY ARG LEU ILE SEQRES 9 A 478 CYS LEU VAL ARG ALA GLU SER ASP GLU ASP ALA ARG ARG SEQRES 10 A 478 ARG LEU GLU LYS THR PHE ASP SER GLY ASP PRO GLU LEU SEQRES 11 A 478 LEU ARG HIS PHE LYS GLU LEU ALA ALA ASP ARG LEU GLU SEQRES 12 A 478 VAL VAL ALA GLY ASP LYS SER GLU PRO ASP LEU GLY LEU SEQRES 13 A 478 ASP GLN PRO MET TRP ARG ARG LEU ALA GLU THR VAL ASP SEQRES 14 A 478 LEU ILE VAL ASP SER ALA ALA MET VAL ASN ALA PHE PRO SEQRES 15 A 478 TYR HIS GLU LEU PHE GLY PRO ASN VAL ALA GLY THR ALA SEQRES 16 A 478 GLU LEU ILE ARG ILE ALA LEU THR THR LYS LEU LYS PRO SEQRES 17 A 478 PHE THR TYR VAL SER THR ALA ASP VAL GLY ALA ALA ILE SEQRES 18 A 478 GLU PRO SER ALA PHE THR GLU ASP ALA ASP ILE ARG VAL SEQRES 19 A 478 ILE SER PRO THR ARG THR VAL ASP GLY GLY TRP ALA GLY SEQRES 20 A 478 GLY TYR GLY THR SER LYS TRP ALA GLY GLU VAL LEU LEU SEQRES 21 A 478 ARG GLU ALA ASN ASP LEU CYS ALA LEU PRO VAL ALA VAL SEQRES 22 A 478 PHE ARG CYS GLY MET ILE LEU ALA ASP THR SER TYR ALA SEQRES 23 A 478 GLY GLN LEU ASN MET SER ASP TRP VAL THR ARG MET VAL SEQRES 24 A 478 LEU SER LEU MET ALA THR GLY ILE ALA PRO ARG SER PHE SEQRES 25 A 478 TYR GLU PRO ASP SER GLU GLY ASN ARG GLN ARG ALA HIS SEQRES 26 A 478 PHE ASP GLY LEU PRO VAL THR PHE VAL ALA GLU ALA ILE SEQRES 27 A 478 ALA VAL LEU GLY ALA ARG VAL ALA GLY SER SER LEU ALA SEQRES 28 A 478 GLY PHE ALA THR TYR HIS VAL MET ASN PRO HIS ASP ASP SEQRES 29 A 478 GLY ILE GLY LEU ASP GLU TYR VAL ASP TRP LEU ILE GLU SEQRES 30 A 478 ALA GLY TYR PRO ILE ARG ARG ILE ASP ASP PHE ALA GLU SEQRES 31 A 478 TRP LEU GLN ARG PHE GLU ALA SER LEU GLY ALA LEU PRO SEQRES 32 A 478 ASP ARG GLN ARG ARG HIS SER VAL LEU PRO MET LEU LEU SEQRES 33 A 478 ALA SER ASN SER GLN ARG LEU GLN PRO LEU LYS PRO THR SEQRES 34 A 478 ARG GLY CYS SER ALA PRO THR ASP ARG PHE ARG ALA ALA SEQRES 35 A 478 VAL ARG ALA ALA LYS VAL GLY SER ASP LYS ASP ASN PRO SEQRES 36 A 478 ASP ILE PRO HIS VAL SER ALA PRO THR ILE ILE ASN TYR SEQRES 37 A 478 VAL THR ASN LEU GLN LEU LEU GLY LEU LEU SEQRES 1 B 478 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 478 LEU VAL PRO ARG GLY SER HIS MET GLY ARG ASP ALA ARG SEQRES 3 B 478 PRO THR SER ASP PRO ARG LEU VAL SER VAL HIS GLY ASP SEQRES 4 B 478 ASN PRO THR GLU VAL HIS ALA SER ASP LEU THR LEU ASP SEQRES 5 B 478 ARG PHE ILE ASP ALA ASP THR LEU ALA THR ALA VAL ASN SEQRES 6 B 478 LEU PRO GLY PRO SER PRO GLU LEU ARG THR VAL LEU LEU SEQRES 7 B 478 THR GLY ALA THR GLY PHE LEU GLY ARG TYR LEU VAL LEU SEQRES 8 B 478 GLU LEU LEU ARG ARG LEU ASP VAL ASP GLY ARG LEU ILE SEQRES 9 B 478 CYS LEU VAL ARG ALA GLU SER ASP GLU ASP ALA ARG ARG SEQRES 10 B 478 ARG LEU GLU LYS THR PHE ASP SER GLY ASP PRO GLU LEU SEQRES 11 B 478 LEU ARG HIS PHE LYS GLU LEU ALA ALA ASP ARG LEU GLU SEQRES 12 B 478 VAL VAL ALA GLY ASP LYS SER GLU PRO ASP LEU GLY LEU SEQRES 13 B 478 ASP GLN PRO MET TRP ARG ARG LEU ALA GLU THR VAL ASP SEQRES 14 B 478 LEU ILE VAL ASP SER ALA ALA MET VAL ASN ALA PHE PRO SEQRES 15 B 478 TYR HIS GLU LEU PHE GLY PRO ASN VAL ALA GLY THR ALA SEQRES 16 B 478 GLU LEU ILE ARG ILE ALA LEU THR THR LYS LEU LYS PRO SEQRES 17 B 478 PHE THR TYR VAL SER THR ALA ASP VAL GLY ALA ALA ILE SEQRES 18 B 478 GLU PRO SER ALA PHE THR GLU ASP ALA ASP ILE ARG VAL SEQRES 19 B 478 ILE SER PRO THR ARG THR VAL ASP GLY GLY TRP ALA GLY SEQRES 20 B 478 GLY TYR GLY THR SER LYS TRP ALA GLY GLU VAL LEU LEU SEQRES 21 B 478 ARG GLU ALA ASN ASP LEU CYS ALA LEU PRO VAL ALA VAL SEQRES 22 B 478 PHE ARG CYS GLY MET ILE LEU ALA ASP THR SER TYR ALA SEQRES 23 B 478 GLY GLN LEU ASN MET SER ASP TRP VAL THR ARG MET VAL SEQRES 24 B 478 LEU SER LEU MET ALA THR GLY ILE ALA PRO ARG SER PHE SEQRES 25 B 478 TYR GLU PRO ASP SER GLU GLY ASN ARG GLN ARG ALA HIS SEQRES 26 B 478 PHE ASP GLY LEU PRO VAL THR PHE VAL ALA GLU ALA ILE SEQRES 27 B 478 ALA VAL LEU GLY ALA ARG VAL ALA GLY SER SER LEU ALA SEQRES 28 B 478 GLY PHE ALA THR TYR HIS VAL MET ASN PRO HIS ASP ASP SEQRES 29 B 478 GLY ILE GLY LEU ASP GLU TYR VAL ASP TRP LEU ILE GLU SEQRES 30 B 478 ALA GLY TYR PRO ILE ARG ARG ILE ASP ASP PHE ALA GLU SEQRES 31 B 478 TRP LEU GLN ARG PHE GLU ALA SER LEU GLY ALA LEU PRO SEQRES 32 B 478 ASP ARG GLN ARG ARG HIS SER VAL LEU PRO MET LEU LEU SEQRES 33 B 478 ALA SER ASN SER GLN ARG LEU GLN PRO LEU LYS PRO THR SEQRES 34 B 478 ARG GLY CYS SER ALA PRO THR ASP ARG PHE ARG ALA ALA SEQRES 35 B 478 VAL ARG ALA ALA LYS VAL GLY SER ASP LYS ASP ASN PRO SEQRES 36 B 478 ASP ILE PRO HIS VAL SER ALA PRO THR ILE ILE ASN TYR SEQRES 37 B 478 VAL THR ASN LEU GLN LEU LEU GLY LEU LEU HET XPE B2601 31 HETNAM XPE 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL HETSYN XPE DECAETHYLENE GLYCOL FORMUL 3 XPE C20 H42 O11 FORMUL 4 HOH *610(H2 O) HELIX 1 AA1 SER A 2081 LEU A 2083 5 3 HELIX 2 AA2 THR A 2084 PHE A 2088 5 5 HELIX 3 AA3 ASP A 2090 ASN A 2099 1 10 HELIX 4 AA4 GLY A 2117 LEU A 2131 1 15 HELIX 5 AA5 SER A 2145 PHE A 2157 1 13 HELIX 6 AA6 ASP A 2161 ALA A 2173 1 13 HELIX 7 AA7 GLU A 2185 LEU A 2190 5 6 HELIX 8 AA8 ASP A 2191 VAL A 2202 1 12 HELIX 9 AA9 LEU A 2220 THR A 2237 1 18 HELIX 10 AB1 ASP A 2250 ALA A 2253 5 4 HELIX 11 AB2 ASP A 2265 SER A 2270 1 6 HELIX 12 AB3 GLY A 2278 ALA A 2302 1 25 HELIX 13 AB4 ASP A 2327 GLY A 2340 1 14 HELIX 14 AB5 VAL A 2365 ALA A 2377 1 13 HELIX 15 AB6 GLY A 2401 ALA A 2412 1 12 HELIX 16 AB7 ASP A 2421 ALA A 2435 1 15 HELIX 17 AB8 PRO A 2437 HIS A 2443 1 7 HELIX 18 AB9 VAL A 2445 LEU A 2450 1 6 HELIX 19 AC1 THR A 2470 LYS A 2481 1 12 HELIX 20 AC2 SER A 2495 LEU A 2509 1 15 HELIX 21 AC3 SER B 2081 LEU B 2083 5 3 HELIX 22 AC4 THR B 2084 PHE B 2088 5 5 HELIX 23 AC5 ASP B 2090 VAL B 2098 1 9 HELIX 24 AC6 GLY B 2117 LEU B 2131 1 15 HELIX 25 AC7 SER B 2145 PHE B 2157 1 13 HELIX 26 AC8 ASP B 2161 ALA B 2173 1 13 HELIX 27 AC9 GLU B 2185 LEU B 2190 5 6 HELIX 28 AD1 ASP B 2191 VAL B 2202 1 12 HELIX 29 AD2 LEU B 2220 LEU B 2236 1 17 HELIX 30 AD3 ASP B 2250 ALA B 2253 5 4 HELIX 31 AD4 ASP B 2265 SER B 2270 1 6 HELIX 32 AD5 GLY B 2281 ALA B 2302 1 22 HELIX 33 AD6 ASP B 2327 GLY B 2340 1 14 HELIX 34 AD7 VAL B 2365 ALA B 2377 1 13 HELIX 35 AD8 GLY B 2401 ALA B 2412 1 12 HELIX 36 AD9 ASP B 2421 ALA B 2435 1 15 HELIX 37 AE1 PRO B 2437 HIS B 2443 1 7 HELIX 38 AE2 VAL B 2445 LEU B 2450 1 6 HELIX 39 AE3 THR B 2470 LYS B 2481 1 12 HELIX 40 AE4 SER B 2495 LEU B 2509 1 15 SHEET 1 AA1 2 THR A2076 HIS A2079 0 SHEET 2 AA1 2 THR A2272 VAL A2275 -1 O VAL A2275 N THR A2076 SHEET 1 AA2 7 LEU A2176 ALA A2180 0 SHEET 2 AA2 7 ARG A2136 VAL A2141 1 N LEU A2137 O GLU A2177 SHEET 3 AA2 7 THR A2109 THR A2113 1 N VAL A2110 O ILE A2138 SHEET 4 AA2 7 LEU A2204 ASP A2207 1 O VAL A2206 N LEU A2111 SHEET 5 AA2 7 PHE A2243 THR A2248 1 O THR A2244 N ILE A2205 SHEET 6 AA2 7 VAL A2305 CYS A2310 1 O PHE A2308 N SER A2247 SHEET 7 AA2 7 PHE A2387 VAL A2392 1 O ALA A2388 N VAL A2307 SHEET 1 AA3 2 MET A2312 LEU A2314 0 SHEET 2 AA3 2 GLY A2362 PRO A2364 1 O LEU A2363 N LEU A2314 SHEET 1 AA4 2 ILE A2341 PRO A2343 0 SHEET 2 AA4 2 ARG A2417 ILE A2419 1 O ILE A2419 N ALA A2342 SHEET 1 AA5 2 GLU B2077 HIS B2079 0 SHEET 2 AA5 2 THR B2272 THR B2274 -1 O ARG B2273 N VAL B2078 SHEET 1 AA6 7 LEU B2176 ALA B2180 0 SHEET 2 AA6 7 ARG B2136 VAL B2141 1 N LEU B2137 O GLU B2177 SHEET 3 AA6 7 THR B2109 THR B2113 1 N VAL B2110 O ILE B2138 SHEET 4 AA6 7 LEU B2204 ASP B2207 1 O VAL B2206 N LEU B2111 SHEET 5 AA6 7 PHE B2243 THR B2248 1 O THR B2244 N ILE B2205 SHEET 6 AA6 7 VAL B2305 CYS B2310 1 O PHE B2308 N SER B2247 SHEET 7 AA6 7 PHE B2387 VAL B2392 1 O ALA B2388 N VAL B2307 SHEET 1 AA7 2 MET B2312 LEU B2314 0 SHEET 2 AA7 2 GLY B2362 PRO B2364 1 O LEU B2363 N LEU B2314 SHEET 1 AA8 2 ILE B2341 PRO B2343 0 SHEET 2 AA8 2 ARG B2417 ILE B2419 1 O ILE B2419 N ALA B2342 CISPEP 1 PHE A 2215 PRO A 2216 0 1.89 CISPEP 2 PHE B 2215 PRO B 2216 0 8.64 SITE 1 AC1 9 ILE A2410 GLU A2411 ALA A2412 TYR A2414 SITE 2 AC1 9 ILE A2500 VAL B2078 ARG B2087 PHE B2088 SITE 3 AC1 9 PHE B2221 CRYST1 78.532 88.593 126.077 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012734 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011288 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007932 0.00000