HEADER TRANSPORT PROTEIN 29-JUL-14 4U6I TITLE CRYSTAL STRUCTURE OF THE EUTL MICROCOMPARTMENT SHELL PROTEIN FROM TITLE 2 CLOSTRIDIUM PERFRINGENS BOUND TO VITAMIN B12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ETHANOLAMINE UTILIZATION PROTEIN EUTL; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 GENE: EUTL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS BACTERIAL MICROCOMPARTMENT, EUT, BMC SHELL PROTEIN, TRANSPORT KEYWDS 2 PROTEIN, COBALAMIN, VITAMIN B12 EXPDTA X-RAY DIFFRACTION AUTHOR M.C.THOMPSON,C.S.CROWLEY,J.S.KOPSTEIN,T.O.YEATES REVDAT 4 27-SEP-23 4U6I 1 REMARK LINK REVDAT 3 22-NOV-17 4U6I 1 SOURCE REMARK REVDAT 2 24-DEC-14 4U6I 1 JRNL REVDAT 1 22-OCT-14 4U6I 0 JRNL AUTH M.C.THOMPSON,C.S.CROWLEY,J.KOPSTEIN,T.A.BOBIK,T.O.YEATES JRNL TITL STRUCTURE OF A BACTERIAL MICROCOMPARTMENT SHELL PROTEIN JRNL TITL 2 BOUND TO A COBALAMIN COFACTOR. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 70 1584 2014 JRNL REFN ESSN 2053-230X JRNL PMID 25484204 JRNL DOI 10.1107/S2053230X1402158X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1555) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 3.570 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 59035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 3020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.3165 - 5.8833 1.00 2823 143 0.2030 0.1992 REMARK 3 2 5.8833 - 4.6700 1.00 2637 161 0.1525 0.1825 REMARK 3 3 4.6700 - 4.0797 1.00 2632 135 0.1386 0.1551 REMARK 3 4 4.0797 - 3.7067 1.00 2561 148 0.1678 0.1902 REMARK 3 5 3.7067 - 3.4411 1.00 2579 144 0.1804 0.2406 REMARK 3 6 3.4411 - 3.2382 1.00 2563 115 0.2035 0.2273 REMARK 3 7 3.2382 - 3.0760 1.00 2546 149 0.2010 0.2488 REMARK 3 8 3.0760 - 2.9421 1.00 2553 125 0.1927 0.1993 REMARK 3 9 2.9421 - 2.8288 1.00 2529 149 0.1967 0.2263 REMARK 3 10 2.8288 - 2.7312 1.00 2553 119 0.1954 0.2839 REMARK 3 11 2.7312 - 2.6458 1.00 2525 136 0.1887 0.2288 REMARK 3 12 2.6458 - 2.5702 1.00 2515 151 0.1863 0.2127 REMARK 3 13 2.5702 - 2.5025 1.00 2481 155 0.1889 0.2467 REMARK 3 14 2.5025 - 2.4415 1.00 2506 120 0.2003 0.2499 REMARK 3 15 2.4415 - 2.3860 1.00 2520 131 0.2025 0.2317 REMARK 3 16 2.3860 - 2.3352 1.00 2537 132 0.2006 0.2259 REMARK 3 17 2.3352 - 2.2885 0.99 2496 130 0.2148 0.2538 REMARK 3 18 2.2885 - 2.2453 1.00 2500 132 0.2285 0.2508 REMARK 3 19 2.2453 - 2.2052 1.00 2489 140 0.2416 0.2341 REMARK 3 20 2.2052 - 2.1678 1.00 2513 137 0.2507 0.2517 REMARK 3 21 2.1678 - 2.1328 1.00 2508 126 0.2576 0.3052 REMARK 3 22 2.1328 - 2.1000 1.00 2449 142 0.2780 0.2982 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5114 REMARK 3 ANGLE : 0.731 6998 REMARK 3 CHIRALITY : 0.041 816 REMARK 3 PLANARITY : 0.003 947 REMARK 3 DIHEDRAL : 11.492 1886 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.189 -4.178 6.112 REMARK 3 T TENSOR REMARK 3 T11: 0.5337 T22: 0.6636 REMARK 3 T33: 0.5696 T12: 0.0260 REMARK 3 T13: -0.1425 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.4390 L22: 3.1677 REMARK 3 L33: 2.7109 L12: 0.7591 REMARK 3 L13: 0.4735 L23: -0.1971 REMARK 3 S TENSOR REMARK 3 S11: 0.0848 S12: -0.2555 S13: -0.0480 REMARK 3 S21: 0.6085 S22: -0.1988 S23: -0.3109 REMARK 3 S31: -0.0837 S32: 0.2754 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.458 -22.445 -15.443 REMARK 3 T TENSOR REMARK 3 T11: 0.6284 T22: 0.5076 REMARK 3 T33: 0.5575 T12: 0.0564 REMARK 3 T13: -0.0338 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 1.7833 L22: 2.6569 REMARK 3 L33: 1.9305 L12: 0.7444 REMARK 3 L13: 0.4624 L23: -0.8152 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: -0.1438 S13: -0.2385 REMARK 3 S21: -0.3589 S22: 0.0911 S23: -0.0125 REMARK 3 S31: 0.5793 S32: -0.2079 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN C AND RESID 1:216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.718 7.447 -23.155 REMARK 3 T TENSOR REMARK 3 T11: 0.5134 T22: 0.5216 REMARK 3 T33: 0.5329 T12: 0.0023 REMARK 3 T13: -0.0313 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 1.7739 L22: 2.2635 REMARK 3 L33: 3.1890 L12: 0.4309 REMARK 3 L13: 1.1829 L23: -0.2678 REMARK 3 S TENSOR REMARK 3 S11: -0.2056 S12: 0.1723 S13: 0.2937 REMARK 3 S21: -0.2288 S22: -0.0861 S23: -0.0521 REMARK 3 S31: -0.4735 S32: 0.2888 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN C AND RESID 301:301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -77.624 5.166 -37.647 REMARK 3 T TENSOR REMARK 3 T11: 1.0136 T22: 1.4178 REMARK 3 T33: 1.1020 T12: -0.0346 REMARK 3 T13: -0.2163 T23: 0.3126 REMARK 3 L TENSOR REMARK 3 L11: 0.0162 L22: 0.0122 REMARK 3 L33: 0.0195 L12: -0.0123 REMARK 3 L13: 0.0065 L23: -0.0119 REMARK 3 S TENSOR REMARK 3 S11: -0.0895 S12: 0.0494 S13: -0.4148 REMARK 3 S21: -0.1946 S22: 0.0426 S23: 0.4864 REMARK 3 S31: -0.0013 S32: -0.4048 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U6I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59035 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 83.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4EDI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES BUFFER, 5% PEG 8000, 8% REMARK 280 ETHYLENE GLYCOL, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 126.00500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.11500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.11500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 189.00750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.11500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.11500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.00250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.11500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.11500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 189.00750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.11500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.11500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.00250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 126.00500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 218 REMARK 465 GLU A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 LEU B 218 REMARK 465 GLU B 219 REMARK 465 HIS B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 PHE C 217 REMARK 465 LEU C 218 REMARK 465 GLU C 219 REMARK 465 HIS C 220 REMARK 465 HIS C 221 REMARK 465 HIS C 222 REMARK 465 HIS C 223 REMARK 465 HIS C 224 REMARK 465 HIS C 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 65 105.27 -164.60 REMARK 500 ALA C 65 101.88 -167.08 REMARK 500 ASN C 213 60.40 -159.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 74 OD1 REMARK 620 2 ASN B 74 OD1 91.0 REMARK 620 3 ASN C 74 OD1 88.7 89.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 B12 C 301 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 32 NE2 REMARK 620 2 B12 C 301 N21 94.7 REMARK 620 3 B12 C 301 N22 94.7 89.9 REMARK 620 4 B12 C 301 N23 89.8 172.1 96.3 REMARK 620 5 B12 C 301 N24 82.6 83.8 172.8 90.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B12 C 301 DBREF 4U6I A 1 217 UNP B1RMU6 B1RMU6_CLOPF 1 217 DBREF 4U6I B 1 217 UNP B1RMU6 B1RMU6_CLOPF 1 217 DBREF 4U6I C 1 217 UNP B1RMU6 B1RMU6_CLOPF 1 217 SEQADV 4U6I LEU A 218 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I GLU A 219 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS A 220 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS A 221 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS A 222 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS A 223 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS A 224 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS A 225 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I LEU B 218 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I GLU B 219 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS B 220 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS B 221 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS B 222 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS B 223 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS B 224 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS B 225 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I LEU C 218 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I GLU C 219 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS C 220 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS C 221 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS C 222 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS C 223 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS C 224 UNP B1RMU6 EXPRESSION TAG SEQADV 4U6I HIS C 225 UNP B1RMU6 EXPRESSION TAG SEQRES 1 A 225 MET LYS ASN ASP LEU ILE ARG PRO ASN VAL LEU SER VAL SEQRES 2 A 225 LYS ILE ILE SER ASN VAL SER PRO GLU MET ALA LYS LYS SEQRES 3 A 225 LEU GLU LEU GLU PRO HIS HIS LYS SER LEU GLY LEU ILE SEQRES 4 A 225 THR ALA ASP CYS ASP ASP VAL THR TYR THR ALA LEU ASP SEQRES 5 A 225 GLU ALA THR LYS ALA ALA GLU VAL ASP VAL VAL TYR ALA SEQRES 6 A 225 ARG SER MET TYR ALA GLY ALA GLY ASN ALA SER THR LYS SEQRES 7 A 225 LEU ALA GLY GLU VAL ILE GLY ILE LEU ALA GLY PRO SER SEQRES 8 A 225 PRO ALA GLU VAL ARG SER GLY LEU ASN ALA THR LEU ASP SEQRES 9 A 225 PHE ILE ASP SER GLY VAL GLY PHE VAL SER ALA ASN GLU SEQRES 10 A 225 ASP ASP SER ILE CYS TYR TYR ALA GLN CYS VAL SER ARG SEQRES 11 A 225 THR GLY SER TYR LEU SER LYS THR ALA GLY ILE ARG GLU SEQRES 12 A 225 GLY GLU ALA LEU ALA TYR LEU VAL ALA PRO PRO LEU GLU SEQRES 13 A 225 ALA MET TYR ALA LEU ASP ALA ALA LEU LYS ALA ALA ASP SEQRES 14 A 225 VAL GLU MET CYS GLU PHE PHE ALA PRO PRO THR GLU THR SEQRES 15 A 225 ASN PHE ALA GLY ALA LEU LEU THR GLY SER GLN SER ALA SEQRES 16 A 225 CYS LYS ALA ALA CYS ASP ALA PHE ALA GLU ALA VAL GLN SEQRES 17 A 225 SER VAL ALA SER ASN PRO LEU GLY PHE LEU GLU HIS HIS SEQRES 18 A 225 HIS HIS HIS HIS SEQRES 1 B 225 MET LYS ASN ASP LEU ILE ARG PRO ASN VAL LEU SER VAL SEQRES 2 B 225 LYS ILE ILE SER ASN VAL SER PRO GLU MET ALA LYS LYS SEQRES 3 B 225 LEU GLU LEU GLU PRO HIS HIS LYS SER LEU GLY LEU ILE SEQRES 4 B 225 THR ALA ASP CYS ASP ASP VAL THR TYR THR ALA LEU ASP SEQRES 5 B 225 GLU ALA THR LYS ALA ALA GLU VAL ASP VAL VAL TYR ALA SEQRES 6 B 225 ARG SER MET TYR ALA GLY ALA GLY ASN ALA SER THR LYS SEQRES 7 B 225 LEU ALA GLY GLU VAL ILE GLY ILE LEU ALA GLY PRO SER SEQRES 8 B 225 PRO ALA GLU VAL ARG SER GLY LEU ASN ALA THR LEU ASP SEQRES 9 B 225 PHE ILE ASP SER GLY VAL GLY PHE VAL SER ALA ASN GLU SEQRES 10 B 225 ASP ASP SER ILE CYS TYR TYR ALA GLN CYS VAL SER ARG SEQRES 11 B 225 THR GLY SER TYR LEU SER LYS THR ALA GLY ILE ARG GLU SEQRES 12 B 225 GLY GLU ALA LEU ALA TYR LEU VAL ALA PRO PRO LEU GLU SEQRES 13 B 225 ALA MET TYR ALA LEU ASP ALA ALA LEU LYS ALA ALA ASP SEQRES 14 B 225 VAL GLU MET CYS GLU PHE PHE ALA PRO PRO THR GLU THR SEQRES 15 B 225 ASN PHE ALA GLY ALA LEU LEU THR GLY SER GLN SER ALA SEQRES 16 B 225 CYS LYS ALA ALA CYS ASP ALA PHE ALA GLU ALA VAL GLN SEQRES 17 B 225 SER VAL ALA SER ASN PRO LEU GLY PHE LEU GLU HIS HIS SEQRES 18 B 225 HIS HIS HIS HIS SEQRES 1 C 225 MET LYS ASN ASP LEU ILE ARG PRO ASN VAL LEU SER VAL SEQRES 2 C 225 LYS ILE ILE SER ASN VAL SER PRO GLU MET ALA LYS LYS SEQRES 3 C 225 LEU GLU LEU GLU PRO HIS HIS LYS SER LEU GLY LEU ILE SEQRES 4 C 225 THR ALA ASP CYS ASP ASP VAL THR TYR THR ALA LEU ASP SEQRES 5 C 225 GLU ALA THR LYS ALA ALA GLU VAL ASP VAL VAL TYR ALA SEQRES 6 C 225 ARG SER MET TYR ALA GLY ALA GLY ASN ALA SER THR LYS SEQRES 7 C 225 LEU ALA GLY GLU VAL ILE GLY ILE LEU ALA GLY PRO SER SEQRES 8 C 225 PRO ALA GLU VAL ARG SER GLY LEU ASN ALA THR LEU ASP SEQRES 9 C 225 PHE ILE ASP SER GLY VAL GLY PHE VAL SER ALA ASN GLU SEQRES 10 C 225 ASP ASP SER ILE CYS TYR TYR ALA GLN CYS VAL SER ARG SEQRES 11 C 225 THR GLY SER TYR LEU SER LYS THR ALA GLY ILE ARG GLU SEQRES 12 C 225 GLY GLU ALA LEU ALA TYR LEU VAL ALA PRO PRO LEU GLU SEQRES 13 C 225 ALA MET TYR ALA LEU ASP ALA ALA LEU LYS ALA ALA ASP SEQRES 14 C 225 VAL GLU MET CYS GLU PHE PHE ALA PRO PRO THR GLU THR SEQRES 15 C 225 ASN PHE ALA GLY ALA LEU LEU THR GLY SER GLN SER ALA SEQRES 16 C 225 CYS LYS ALA ALA CYS ASP ALA PHE ALA GLU ALA VAL GLN SEQRES 17 C 225 SER VAL ALA SER ASN PRO LEU GLY PHE LEU GLU HIS HIS SEQRES 18 C 225 HIS HIS HIS HIS HET NA A 301 1 HET B12 C 301 91 HETNAM NA SODIUM ION HETNAM B12 COBALAMIN FORMUL 4 NA NA 1+ FORMUL 5 B12 C62 H89 CO N13 O14 P 2+ FORMUL 6 HOH *102(H2 O) HELIX 1 AA1 SER A 20 LEU A 27 1 8 HELIX 2 AA2 CYS A 43 ALA A 58 1 16 HELIX 3 AA3 GLY A 71 ALA A 75 5 5 HELIX 4 AA4 SER A 91 ASP A 107 1 17 HELIX 5 AA5 GLY A 132 GLY A 140 1 9 HELIX 6 AA6 PRO A 153 ALA A 168 1 16 HELIX 7 AA7 SER A 192 ASN A 213 1 22 HELIX 8 AA8 SER B 20 LEU B 27 1 8 HELIX 9 AA9 CYS B 43 ALA B 58 1 16 HELIX 10 AB1 GLY B 71 ALA B 75 5 5 HELIX 11 AB2 SER B 91 ASP B 107 1 17 HELIX 12 AB3 GLY B 132 GLY B 140 1 9 HELIX 13 AB4 PRO B 153 ALA B 168 1 16 HELIX 14 AB5 SER B 192 ASN B 213 1 22 HELIX 15 AB6 SER C 20 LEU C 27 1 8 HELIX 16 AB7 CYS C 43 ALA C 58 1 16 HELIX 17 AB8 GLY C 71 ALA C 75 5 5 HELIX 18 AB9 SER C 91 ASP C 107 1 17 HELIX 19 AC1 GLY C 132 GLY C 140 1 9 HELIX 20 AC2 PRO C 153 ALA C 168 1 16 HELIX 21 AC3 SER C 192 SER C 212 1 21 SHEET 1 AA1 6 LEU A 5 ILE A 6 0 SHEET 2 AA1 6 PHE A 112 SER A 114 -1 O PHE A 112 N ILE A 6 SHEET 3 AA1 6 CYS A 122 VAL A 128 -1 O TYR A 123 N VAL A 113 SHEET 4 AA1 6 LEU A 147 ALA A 152 -1 O VAL A 151 N TYR A 124 SHEET 5 AA1 6 ALA A 185 THR A 190 -1 O LEU A 189 N ALA A 148 SHEET 6 AA1 6 GLU A 171 PHE A 176 -1 N PHE A 176 O GLY A 186 SHEET 1 AA2 4 VAL A 10 ILE A 16 0 SHEET 2 AA2 4 SER A 35 ALA A 41 -1 O LEU A 38 N LYS A 14 SHEET 3 AA2 4 VAL A 83 GLY A 89 -1 O LEU A 87 N GLY A 37 SHEET 4 AA2 4 ASP A 61 SER A 67 -1 N TYR A 64 O ILE A 86 SHEET 1 AA3 6 LEU B 5 ILE B 6 0 SHEET 2 AA3 6 PHE B 112 SER B 114 -1 O PHE B 112 N ILE B 6 SHEET 3 AA3 6 CYS B 122 VAL B 128 -1 O TYR B 123 N VAL B 113 SHEET 4 AA3 6 ALA B 146 ALA B 152 -1 O TYR B 149 N GLN B 126 SHEET 5 AA3 6 ALA B 185 GLY B 191 -1 O LEU B 189 N ALA B 148 SHEET 6 AA3 6 VAL B 170 PHE B 176 -1 N PHE B 176 O GLY B 186 SHEET 1 AA4 4 VAL B 10 ILE B 16 0 SHEET 2 AA4 4 SER B 35 ALA B 41 -1 O LEU B 38 N LYS B 14 SHEET 3 AA4 4 VAL B 83 GLY B 89 -1 O LEU B 87 N GLY B 37 SHEET 4 AA4 4 ASP B 61 SER B 67 -1 N TYR B 64 O ILE B 86 SHEET 1 AA5 6 LEU C 5 ILE C 6 0 SHEET 2 AA5 6 PHE C 112 SER C 114 -1 O PHE C 112 N ILE C 6 SHEET 3 AA5 6 CYS C 122 VAL C 128 -1 O TYR C 123 N VAL C 113 SHEET 4 AA5 6 ALA C 146 ALA C 152 -1 O VAL C 151 N TYR C 124 SHEET 5 AA5 6 ALA C 185 GLY C 191 -1 O LEU C 189 N ALA C 148 SHEET 6 AA5 6 GLU C 171 PHE C 176 -1 N CYS C 173 O LEU C 188 SHEET 1 AA6 4 VAL C 10 ILE C 16 0 SHEET 2 AA6 4 SER C 35 ALA C 41 -1 O LEU C 38 N LYS C 14 SHEET 3 AA6 4 VAL C 83 GLY C 89 -1 O GLY C 85 N ILE C 39 SHEET 4 AA6 4 ASP C 61 SER C 67 -1 N TYR C 64 O ILE C 86 LINK OD1 ASN A 74 NA NA A 301 1555 1555 2.37 LINK NA NA A 301 OD1 ASN B 74 1555 1555 2.39 LINK NA NA A 301 OD1 ASN C 74 1555 1555 2.37 LINK NE2 HIS C 32 CO B12 C 301 1555 1555 2.16 CISPEP 1 PRO A 178 PRO A 179 0 1.15 CISPEP 2 PRO B 178 PRO B 179 0 -1.12 CISPEP 3 PRO C 178 PRO C 179 0 -0.25 SITE 1 AC1 3 ASN A 74 ASN B 74 ASN C 74 SITE 1 AC2 7 SER B 108 GLY B 109 VAL B 110 GLN B 126 SITE 2 AC2 7 PRO C 31 HIS C 32 LYS C 34 CRYST1 88.230 88.230 252.010 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011334 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003968 0.00000