data_4U6K # _entry.id 4U6K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.359 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4U6K pdb_00004u6k 10.2210/pdb4u6k/pdb WWPDB D_1000202750 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4U6L PDB . unspecified 4U6M PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4U6K _pdbx_database_status.recvd_initial_deposition_date 2014-07-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kondo, J.' 1 'Nomura, Y.' 2 'Kitahara, Y.' 3 'Obika, S.' 4 'Torigoe, H.' 5 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem.Commun.(Camb.)' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1364-548X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 52 _citation.language ? _citation.page_first 2354 _citation.page_last 2357 _citation.title ;The crystal structure of a 2',4'-BNA(NC)[N-Me]-modified antisense gapmer in complex with the target RNA. ; _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/c5cc08300a _citation.pdbx_database_id_PubMed 26731288 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Nomura, Y.' 2 ? primary 'Kitahara, Y.' 3 ? primary 'Obika, S.' 4 ? primary 'Torigoe, H.' 5 ? # _cell.length_a 43.920 _cell.length_b 58.960 _cell.length_c 102.440 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4U6K _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4U6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') ; 2981.895 2 ? ? ? ? 2 polymer syn ;DNA (5'-D(*(NCU)P*(NTT)P*CP*TP*TP*CP*TP*(NTT)P*(NCU))-3') ; 2888.994 2 ? ? ? ? 3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 3 ? ? ? ? 4 water nat water 18.015 355 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GAAGAAGAG GAAGAAGAG A,C ? 2 polydeoxyribonucleotide no yes '(NCU)(NTT)(DC)(DT)(DT)(DC)(DT)(NTT)(NCU)' XXCTTCTXX B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 A n 1 4 G n 1 5 A n 1 6 A n 1 7 G n 1 8 A n 1 9 G n 2 1 NCU n 2 2 NTT n 2 3 DC n 2 4 DT n 2 5 DT n 2 6 DC n 2 7 DT n 2 8 NTT n 2 9 NCU n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 9 'synthetic construct' ? 32630 ? 2 1 sample 1 9 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 4U6K 4U6K ? 1 ? 1 2 PDB 4U6K 4U6K ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4U6K A 1 ? 9 ? 4U6K 1 ? 9 ? 1 9 2 2 4U6K B 1 ? 9 ? 4U6K 1 ? 9 ? 1 9 3 1 4U6K C 1 ? 9 ? 4U6K 1 ? 9 ? 1 9 4 2 4U6K D 1 ? 9 ? 4U6K 1 ? 9 ? 1 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 NCU 'DNA linking' n ;[(1R,5R,7R,8S)-7-(4-amino-5-methyl-2-oxopyrimidin-1(2H)-yl)-8-hydroxy-3-methyl-2,6-dioxa-3-azabicyclo[3.2.1]oct-5-yl]methyl dihydrogen phosphate ; ? 'C12 H19 N4 O8 P' 378.275 NTT 'DNA linking' n ;[(1R,5R,7R,8S)-8-hydroxy-3-methyl-7-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-2,6-dioxa-3-azabicyclo[3.2.1]oct-5-yl]methyl dihydrogen phosphate ; ? 'C12 H18 N3 O9 P' 379.260 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4U6K _exptl.crystals_number 2 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # loop_ _exptl_crystal.colour _exptl_crystal.density_diffrn _exptl_crystal.density_Matthews _exptl_crystal.density_method _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.id _exptl_crystal.preparation _exptl_crystal.size_max _exptl_crystal.size_mid _exptl_crystal.size_min _exptl_crystal.size_rad _exptl_crystal.colour_lustre _exptl_crystal.colour_modifier _exptl_crystal.colour_primary _exptl_crystal.density_meas _exptl_crystal.density_meas_esd _exptl_crystal.density_meas_gt _exptl_crystal.density_meas_lt _exptl_crystal.density_meas_temp _exptl_crystal.density_meas_temp_esd _exptl_crystal.density_meas_temp_gt _exptl_crystal.density_meas_temp_lt _exptl_crystal.pdbx_crystal_image_url _exptl_crystal.pdbx_crystal_image_format _exptl_crystal.pdbx_mosaicity _exptl_crystal.pdbx_mosaicity_esd ? ? 2.82 ? 61.06 ? ? 1 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Na Cacodylate, NaCl, Hexammine Cobalt, MPD' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.ambient_environment _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.ambient_temp_esd _diffrn.crystal_id _diffrn.crystal_support _diffrn.crystal_treatment _diffrn.details _diffrn.id _diffrn.ambient_pressure _diffrn.ambient_pressure_esd _diffrn.ambient_pressure_gt _diffrn.ambient_pressure_lt _diffrn.ambient_temp_gt _diffrn.ambient_temp_lt ? 100 ? ? 1 ? ? ? 1 ? ? ? ? ? ? ? 100 ? ? 2 ? ? ? 2 ? ? ? ? ? ? # loop_ _diffrn_detector.details _diffrn_detector.detector _diffrn_detector.diffrn_id _diffrn_detector.type _diffrn_detector.area_resol_mean _diffrn_detector.dtime _diffrn_detector.pdbx_frames_total _diffrn_detector.pdbx_collection_time_total _diffrn_detector.pdbx_collection_date ? CCD 1 'ADSC QUANTUM 315r' ? ? ? ? 2013-05-25 ? CCD 2 'ADSC QUANTUM 315r' ? ? ? ? 2013-05-25 # loop_ _diffrn_radiation.collimation _diffrn_radiation.diffrn_id _diffrn_radiation.filter_edge _diffrn_radiation.inhomogeneity _diffrn_radiation.monochromator _diffrn_radiation.polarisn_norm _diffrn_radiation.polarisn_ratio _diffrn_radiation.probe _diffrn_radiation.type _diffrn_radiation.xray_symbol _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_wavelength_list _diffrn_radiation.pdbx_wavelength _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_analyzer _diffrn_radiation.pdbx_scattering_type ? 1 ? ? ? ? ? ? ? ? 1 M ? ? 'SINGLE WAVELENGTH' ? x-ray ? 2 ? ? ? ? ? ? ? ? 2 M ? ? MAD ? x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.98 1.0 2 1.60465 1.0 3 1.60830 1.0 # loop_ _diffrn_source.current _diffrn_source.details _diffrn_source.diffrn_id _diffrn_source.power _diffrn_source.size _diffrn_source.source _diffrn_source.target _diffrn_source.type _diffrn_source.voltage _diffrn_source.take-off_angle _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_synchrotron_site ? ? 1 ? ? SYNCHROTRON ? 'PHOTON FACTORY BEAMLINE BL-17A' ? ? 0.98 ? BL-17A 'Photon Factory' ? ? 2 ? ? SYNCHROTRON ? 'PHOTON FACTORY BEAMLINE BL-17A' ? ? '1.60465, 1.60830, 0.98' ? BL-17A 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4U6K _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.500 _reflns.d_resolution_low 25.610 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21282 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.820 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.100 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.990 _reflns.pdbx_scaling_rejects 1099 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 146347 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.500 1.550 ? 5.400 14758 ? ? 2110 ? 98.000 ? ? ? ? 0.280 ? ? ? ? ? ? ? ? 6.980 ? 1.090 ? ? ? ? 25 1 1 ? ? 1.550 1.620 ? 6.300 14644 ? ? 2079 ? 98.200 ? ? ? ? 0.214 ? ? ? ? ? ? ? ? 7.030 ? 1.020 ? ? ? ? 37 2 1 ? ? 1.620 1.690 ? 7.600 14788 ? ? 2118 ? 97.800 ? ? ? ? 0.160 ? ? ? ? ? ? ? ? 6.970 ? 0.940 ? ? ? ? 33 3 1 ? ? 1.690 1.780 ? 8.700 14606 ? ? 2105 ? 98.800 ? ? ? ? 0.131 ? ? ? ? ? ? ? ? 6.920 ? 0.850 ? ? ? ? 41 4 1 ? ? 1.780 1.890 ? 10.400 14570 ? ? 2113 ? 98.600 ? ? ? ? 0.113 ? ? ? ? ? ? ? ? 6.870 ? 0.830 ? ? ? ? 44 5 1 ? ? 1.890 2.040 ? 12.100 14754 ? ? 2147 ? 98.600 ? ? ? ? 0.094 ? ? ? ? ? ? ? ? 6.830 ? 0.830 ? ? ? ? 81 6 1 ? ? 2.040 2.240 ? 17.300 14617 ? ? 2126 ? 99.000 ? ? ? ? 0.070 ? ? ? ? ? ? ? ? 6.810 ? 0.920 ? ? ? ? 136 7 1 ? ? 2.240 2.560 ? 22.700 14903 ? ? 2176 ? 99.400 ? ? ? ? 0.059 ? ? ? ? ? ? ? ? 6.770 ? 1.000 ? ? ? ? 177 8 1 ? ? 2.560 3.230 ? 34.200 14959 ? ? 2178 ? 99.500 ? ? ? ? 0.042 ? ? ? ? ? ? ? ? 6.800 ? 1.070 ? ? ? ? 156 9 1 ? ? 3.230 25.610 ? 49.200 13748 ? ? 2130 ? 92.400 ? ? ? ? 0.037 ? ? ? ? ? ? ? ? 6.280 ? 1.380 ? ? ? ? 369 10 1 ? ? # _refine.aniso_B[1][1] 0.4410 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.0040 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -0.4450 _refine.B_iso_max 82.040 _refine.B_iso_mean 22.3891 _refine.B_iso_min 8.480 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4U6K _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.5000 _refine.ls_d_res_low 25.610 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21282 _refine.ls_number_reflns_R_free 2111 _refine.ls_number_reflns_R_work 19171 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.0000 _refine.ls_percent_reflns_R_free 9.7000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2156 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1982 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol 45.5582 _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.8754 # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.5000 _refine_hist.d_res_low 25.610 _refine_hist.pdbx_number_atoms_ligand 117 _refine_hist.number_atoms_solvent 355 _refine_hist.number_atoms_total 1252 _refine_hist.pdbx_number_residues_total 32 _refine_hist.pdbx_B_iso_mean_ligand 18.05 _refine_hist.pdbx_B_iso_mean_solvent 35.17 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 780 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.019 ? ? ? c_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.013 ? ? ? c_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.000 1.500 ? ? c_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.153 2.000 ? ? c_scbond_it ? ? 'X-RAY DIFFRACTION' ? 0.000 2.000 ? ? c_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 1.516 2.500 ? ? c_scangle_it ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error 'X-RAY DIFFRACTION' 1.5000 1.5500 . . 214 1895 98.0000 . . . 0.2649 . 0.2584 . . . . . . . . 'X-RAY DIFFRACTION' 1.5500 1.6200 . . 197 1880 98.2000 . . . 0.3315 . 0.2462 . . . . . . . . 'X-RAY DIFFRACTION' 1.6200 1.6900 . . 212 1910 97.8000 . . . 0.2073 . 0.2039 . . . . . . . . 'X-RAY DIFFRACTION' 1.6900 1.7800 . . 194 1909 98.8000 . . . 0.2378 . 0.2043 . . . . . . . . 'X-RAY DIFFRACTION' 1.7800 1.8900 . . 202 1912 98.6000 . . . 0.2283 . 0.2059 . . . . . . . . 'X-RAY DIFFRACTION' 1.8900 2.0400 . . 227 1923 98.6000 . . . 0.2296 . 0.2085 . . . . . . . . 'X-RAY DIFFRACTION' 2.0400 2.2400 . . 207 1920 99.0000 . . . 0.2112 . 0.1997 . . . . . . . . 'X-RAY DIFFRACTION' 2.2400 2.5600 . . 223 1951 99.4000 . . . 0.2232 . 0.1966 . . . . . . . . 'X-RAY DIFFRACTION' 2.5600 3.2300 . . 211 1967 99.5000 . . . 0.2075 . 0.2003 . . . . . . . . 'X-RAY DIFFRACTION' 3.2300 25.610 . . 224 1904 92.1000 . . . 0.1916 . 0.1766 . . . . . . . . # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 dna-rna_201312.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:ion.param ? 'X-RAY DIFFRACTION' 4 nco_xplor.param ? # _struct.entry_id 4U6K _struct.title ;Crystal structure of DNA/RNA duplex containing 2'-4'-BNA-NC ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4U6K _struct_keywords.text 'DNA/RNA duplex, antisense, Bridged Nucleic Acid, DNA-RNA complex' _struct_keywords.pdbx_keywords DNA/RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B NCU 1 "O3'" ? ? ? 1_555 B NTT 2 P ? ? B NCU 1 B NTT 2 1_555 ? ? ? ? ? ? ? 1.548 ? ? covale2 covale both ? B NTT 2 "O3'" ? ? ? 1_555 B DC 3 P ? ? B NTT 2 B DC 3 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale3 covale both ? B DT 7 "O3'" ? ? ? 1_555 B NTT 8 P ? ? B DT 7 B NTT 8 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale4 covale both ? B NTT 8 "O3'" ? ? ? 1_555 B NCU 9 P ? ? B NTT 8 B NCU 9 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale5 covale both ? D NCU 1 "O3'" ? ? ? 1_555 D NTT 2 P ? ? D NCU 1 D NTT 2 1_555 ? ? ? ? ? ? ? 1.550 ? ? covale6 covale both ? D NTT 2 "O3'" ? ? ? 1_555 D DC 3 P ? ? D NTT 2 D DC 3 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale7 covale both ? D DT 7 "O3'" ? ? ? 1_555 D NTT 8 P ? ? D DT 7 D NTT 8 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale8 covale both ? D NTT 8 "O3'" ? ? ? 1_555 D NCU 9 P ? ? D NTT 8 D NCU 9 1_555 ? ? ? ? ? ? ? 1.606 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B NCU 9 N3 ? ? A G 1 B NCU 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B NCU 9 O2 ? ? A G 1 B NCU 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B NCU 9 N4 ? ? A G 1 B NCU 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 B NTT 8 N3 ? ? A A 2 B NTT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 B NTT 8 O4 ? ? A A 2 B NTT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B DT 7 N3 ? ? A A 3 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B DT 7 O4 ? ? A A 3 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B DC 6 N3 ? ? A G 4 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B DC 6 O2 ? ? A G 4 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B DC 6 N4 ? ? A G 4 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N1 ? ? ? 1_555 B DT 5 N3 ? ? A A 5 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N6 ? ? ? 1_555 B DT 5 O4 ? ? A A 5 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 6 N1 ? ? ? 1_555 B DT 4 N3 ? ? A A 6 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N6 ? ? ? 1_555 B DT 4 O4 ? ? A A 6 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 B DC 3 N3 ? ? A G 7 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 B DC 3 O2 ? ? A G 7 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 B DC 3 N4 ? ? A G 7 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 8 N1 ? ? ? 1_555 B NTT 2 N3 ? ? A A 8 B NTT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 8 N6 ? ? ? 1_555 B NTT 2 O4 ? ? A A 8 B NTT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 B NCU 1 N3 ? ? A G 9 B NCU 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 B NCU 1 O2 ? ? A G 9 B NCU 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 B NCU 1 N4 ? ? A G 9 B NCU 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C G 1 N1 ? ? ? 1_555 D NCU 9 N3 ? ? C G 1 D NCU 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C G 1 N2 ? ? ? 1_555 D NCU 9 O2 ? ? C G 1 D NCU 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C G 1 O6 ? ? ? 1_555 D NCU 9 N4 ? ? C G 1 D NCU 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C A 2 N1 ? ? ? 1_555 D NTT 8 N3 ? ? C A 2 D NTT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C A 2 N6 ? ? ? 1_555 D NTT 8 O4 ? ? C A 2 D NTT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C A 3 N1 ? ? ? 1_555 D DT 7 N3 ? ? C A 3 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C A 3 N6 ? ? ? 1_555 D DT 7 O4 ? ? C A 3 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 4 N1 ? ? ? 1_555 D DC 6 N3 ? ? C G 4 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 4 N2 ? ? ? 1_555 D DC 6 O2 ? ? C G 4 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 4 O6 ? ? ? 1_555 D DC 6 N4 ? ? C G 4 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C A 5 N1 ? ? ? 1_555 D DT 5 N3 ? ? C A 5 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C A 5 N6 ? ? ? 1_555 D DT 5 O4 ? ? C A 5 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C A 6 N1 ? ? ? 1_555 D DT 4 N3 ? ? C A 6 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C A 6 N6 ? ? ? 1_555 D DT 4 O4 ? ? C A 6 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C G 7 N1 ? ? ? 1_555 D DC 3 N3 ? ? C G 7 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C G 7 N2 ? ? ? 1_555 D DC 3 O2 ? ? C G 7 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C G 7 O6 ? ? ? 1_555 D DC 3 N4 ? ? C G 7 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C A 8 N1 ? ? ? 1_555 D NTT 2 N3 ? ? C A 8 D NTT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C A 8 N6 ? ? ? 1_555 D NTT 2 O4 ? ? C A 8 D NTT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 9 N1 ? ? ? 1_555 D NCU 1 N3 ? ? C G 9 D NCU 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 9 N2 ? ? ? 1_555 D NCU 1 O2 ? ? C G 9 D NCU 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C G 9 O6 ? ? ? 1_555 D NCU 1 N4 ? ? C G 9 D NCU 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NCO 101 ? 6 'binding site for residue NCO A 101' AC2 Software A NCO 102 ? 8 'binding site for residue NCO A 102' AC3 Software C NCO 101 ? 7 'binding site for residue NCO C 101' AC4 Software B NCU 1 ? 18 'binding site for residues NCU B 1 and NTT B 2' AC5 Software B NTT 8 ? 23 'binding site for residues NTT B 8 and NCU B 9' AC6 Software D NCU 1 ? 14 'binding site for residues NCU D 1 and NTT D 2' AC7 Software D NTT 2 ? 15 'binding site for Di-nucleotide NTT D 2 and DC D 3' AC8 Software D DT 7 ? 12 'binding site for Di-nucleotide DT D 7 and NTT D 8' AC9 Software D NTT 8 ? 19 'binding site for residues NTT D 8 and NCU D 9' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 A A 3 ? A A 3 . ? 1_555 ? 2 AC1 6 G A 4 ? G A 4 . ? 1_555 ? 3 AC1 6 HOH H . ? HOH A 233 . ? 1_555 ? 4 AC1 6 HOH H . ? HOH A 261 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH A 262 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH A 264 . ? 1_555 ? 7 AC2 8 A A 8 ? A A 8 . ? 1_555 ? 8 AC2 8 G A 9 ? G A 9 . ? 1_555 ? 9 AC2 8 HOH H . ? HOH A 209 . ? 1_555 ? 10 AC2 8 NCU B 1 ? NCU B 1 . ? 1_555 ? 11 AC2 8 A C 8 ? A C 8 . ? 1_555 ? 12 AC2 8 G C 9 ? G C 9 . ? 1_555 ? 13 AC2 8 HOH J . ? HOH C 205 . ? 1_555 ? 14 AC2 8 HOH J . ? HOH C 228 . ? 1_555 ? 15 AC3 7 A C 3 ? A C 3 . ? 1_555 ? 16 AC3 7 G C 4 ? G C 4 . ? 1_555 ? 17 AC3 7 HOH J . ? HOH C 226 . ? 1_555 ? 18 AC3 7 HOH J . ? HOH C 231 . ? 1_555 ? 19 AC3 7 HOH J . ? HOH C 249 . ? 1_555 ? 20 AC3 7 HOH J . ? HOH C 253 . ? 1_555 ? 21 AC3 7 HOH J . ? HOH C 254 . ? 1_555 ? 22 AC4 18 A A 2 ? A A 2 . ? 8_456 ? 23 AC4 18 A A 8 ? A A 8 . ? 1_555 ? 24 AC4 18 G A 9 ? G A 9 . ? 1_555 ? 25 AC4 18 NCO F . ? NCO A 102 . ? 1_555 ? 26 AC4 18 DC B 3 ? DC B 3 . ? 1_555 ? 27 AC4 18 NTT B 8 ? NTT B 8 . ? 8_456 ? 28 AC4 18 NCU B 9 ? NCU B 9 . ? 8_456 ? 29 AC4 18 HOH I . ? HOH B 109 . ? 1_555 ? 30 AC4 18 HOH I . ? HOH B 113 . ? 1_555 ? 31 AC4 18 HOH I . ? HOH B 115 . ? 1_555 ? 32 AC4 18 HOH I . ? HOH B 116 . ? 1_555 ? 33 AC4 18 HOH I . ? HOH B 121 . ? 1_555 ? 34 AC4 18 HOH I . ? HOH B 136 . ? 1_555 ? 35 AC4 18 HOH I . ? HOH B 140 . ? 1_555 ? 36 AC4 18 HOH I . ? HOH B 146 . ? 1_555 ? 37 AC4 18 G C 9 ? G C 9 . ? 1_555 ? 38 AC4 18 NCU D 1 ? NCU D 1 . ? 1_555 ? 39 AC4 18 HOH K . ? HOH D 128 . ? 1_555 ? 40 AC5 23 G A 1 ? G A 1 . ? 1_555 ? 41 AC5 23 A A 2 ? A A 2 . ? 1_555 ? 42 AC5 23 A A 3 ? A A 3 . ? 1_555 ? 43 AC5 23 G A 9 ? G A 9 . ? 8_556 ? 44 AC5 23 NCU B 1 ? NCU B 1 . ? 8_556 ? 45 AC5 23 NTT B 2 ? NTT B 2 . ? 8_556 ? 46 AC5 23 DT B 7 ? DT B 7 . ? 1_555 ? 47 AC5 23 HOH I . ? HOH B 103 . ? 1_555 ? 48 AC5 23 HOH I . ? HOH B 104 . ? 1_555 ? 49 AC5 23 HOH I . ? HOH B 110 . ? 1_555 ? 50 AC5 23 HOH I . ? HOH B 114 . ? 1_555 ? 51 AC5 23 HOH I . ? HOH B 117 . ? 1_555 ? 52 AC5 23 HOH I . ? HOH B 123 . ? 1_555 ? 53 AC5 23 HOH I . ? HOH B 130 . ? 1_555 ? 54 AC5 23 HOH I . ? HOH B 133 . ? 1_555 ? 55 AC5 23 HOH I . ? HOH B 135 . ? 1_555 ? 56 AC5 23 HOH I . ? HOH B 137 . ? 1_555 ? 57 AC5 23 HOH I . ? HOH B 138 . ? 1_555 ? 58 AC5 23 HOH I . ? HOH B 139 . ? 1_555 ? 59 AC5 23 HOH I . ? HOH B 144 . ? 1_555 ? 60 AC5 23 G C 1 ? G C 1 . ? 6_654 ? 61 AC5 23 NCU D 1 ? NCU D 1 . ? 8_556 ? 62 AC5 23 HOH K . ? HOH D 113 . ? 8_556 ? 63 AC6 14 G A 9 ? G A 9 . ? 1_555 ? 64 AC6 14 NCU B 1 ? NCU B 1 . ? 1_555 ? 65 AC6 14 NCU B 9 ? NCU B 9 . ? 8_456 ? 66 AC6 14 A C 8 ? A C 8 . ? 1_555 ? 67 AC6 14 G C 9 ? G C 9 . ? 1_555 ? 68 AC6 14 HOH J . ? HOH C 215 . ? 3_656 ? 69 AC6 14 DC D 3 ? DC D 3 . ? 1_555 ? 70 AC6 14 HOH K . ? HOH D 113 . ? 1_555 ? 71 AC6 14 HOH K . ? HOH D 115 . ? 1_555 ? 72 AC6 14 HOH K . ? HOH D 116 . ? 1_555 ? 73 AC6 14 HOH K . ? HOH D 120 . ? 1_555 ? 74 AC6 14 HOH K . ? HOH D 125 . ? 1_555 ? 75 AC6 14 HOH K . ? HOH D 128 . ? 1_555 ? 76 AC6 14 HOH K . ? HOH D 137 . ? 1_555 ? 77 AC7 15 G C 7 ? G C 7 . ? 1_555 ? 78 AC7 15 A C 8 ? A C 8 . ? 1_555 ? 79 AC7 15 G C 9 ? G C 9 . ? 1_555 ? 80 AC7 15 NCU D 1 ? NCU D 1 . ? 1_555 ? 81 AC7 15 DT D 4 ? DT D 4 . ? 1_555 ? 82 AC7 15 HOH K . ? HOH D 108 . ? 1_555 ? 83 AC7 15 HOH K . ? HOH D 109 . ? 1_555 ? 84 AC7 15 HOH K . ? HOH D 115 . ? 1_555 ? 85 AC7 15 HOH K . ? HOH D 116 . ? 1_555 ? 86 AC7 15 HOH K . ? HOH D 120 . ? 1_555 ? 87 AC7 15 HOH K . ? HOH D 125 . ? 1_555 ? 88 AC7 15 HOH K . ? HOH D 126 . ? 1_555 ? 89 AC7 15 HOH K . ? HOH D 133 . ? 1_555 ? 90 AC7 15 HOH K . ? HOH D 137 . ? 1_555 ? 91 AC7 15 HOH K . ? HOH D 142 . ? 1_555 ? 92 AC8 12 A C 2 ? A C 2 . ? 1_555 ? 93 AC8 12 A C 3 ? A C 3 . ? 1_555 ? 94 AC8 12 G C 4 ? G C 4 . ? 1_555 ? 95 AC8 12 DC D 6 ? DC D 6 . ? 1_555 ? 96 AC8 12 NCU D 9 ? NCU D 9 . ? 1_555 ? 97 AC8 12 HOH K . ? HOH D 102 . ? 1_555 ? 98 AC8 12 HOH K . ? HOH D 111 . ? 1_555 ? 99 AC8 12 HOH K . ? HOH D 112 . ? 1_555 ? 100 AC8 12 HOH K . ? HOH D 121 . ? 1_555 ? 101 AC8 12 HOH K . ? HOH D 122 . ? 1_555 ? 102 AC8 12 HOH K . ? HOH D 124 . ? 1_555 ? 103 AC8 12 HOH K . ? HOH D 130 . ? 1_555 ? 104 AC9 19 G A 1 ? G A 1 . ? 6_655 ? 105 AC9 19 G C 1 ? G C 1 . ? 1_555 ? 106 AC9 19 A C 2 ? A C 2 . ? 1_555 ? 107 AC9 19 A C 3 ? A C 3 . ? 1_555 ? 108 AC9 19 DT D 7 ? DT D 7 . ? 1_555 ? 109 AC9 19 HOH K . ? HOH D 101 . ? 1_555 ? 110 AC9 19 HOH K . ? HOH D 102 . ? 1_555 ? 111 AC9 19 HOH K . ? HOH D 106 . ? 1_555 ? 112 AC9 19 HOH K . ? HOH D 107 . ? 1_555 ? 113 AC9 19 HOH K . ? HOH D 111 . ? 1_555 ? 114 AC9 19 HOH K . ? HOH D 114 . ? 1_555 ? 115 AC9 19 HOH K . ? HOH D 119 . ? 1_555 ? 116 AC9 19 HOH K . ? HOH D 121 . ? 1_555 ? 117 AC9 19 HOH K . ? HOH D 122 . ? 1_555 ? 118 AC9 19 HOH K . ? HOH D 129 . ? 1_555 ? 119 AC9 19 HOH K . ? HOH D 130 . ? 1_555 ? 120 AC9 19 HOH K . ? HOH D 132 . ? 1_555 ? 121 AC9 19 HOH K . ? HOH D 134 . ? 1_555 ? 122 AC9 19 HOH K . ? HOH D 139 . ? 1_555 ? # _atom_sites.entry_id 4U6K _atom_sites.fract_transf_matrix[1][1] 0.022769 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016961 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009762 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 A 2 2 2 A A A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n B 2 1 NCU 1 1 1 NCU NNC B . n B 2 2 NTT 2 2 2 NTT NNT B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DC 6 6 6 DC DC B . n B 2 7 DT 7 7 7 DT DT B . n B 2 8 NTT 8 8 8 NTT NNT B . n B 2 9 NCU 9 9 9 NCU NNC B . n C 1 1 G 1 1 1 G G C . n C 1 2 A 2 2 2 A A C . n C 1 3 A 3 3 3 A A C . n C 1 4 G 4 4 4 G G C . n C 1 5 A 5 5 5 A A C . n C 1 6 A 6 6 6 A A C . n C 1 7 G 7 7 7 G G C . n C 1 8 A 8 8 8 A A C . n C 1 9 G 9 9 9 G G C . n D 2 1 NCU 1 1 1 NCU NNC D . n D 2 2 NTT 2 2 2 NTT NNT D . n D 2 3 DC 3 3 3 DC DC D . n D 2 4 DT 4 4 4 DT DT D . n D 2 5 DT 5 5 5 DT DT D . n D 2 6 DC 6 6 6 DC DC D . n D 2 7 DT 7 7 7 DT DT D . n D 2 8 NTT 8 8 8 NTT NNT D . n D 2 9 NCU 9 9 9 NCU NNC D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NCO 1 101 51 NCO NCO A . F 3 NCO 1 102 52 NCO NCO A . G 3 NCO 1 101 53 NCO NCO C . H 4 HOH 1 201 270 HOH HOH A . H 4 HOH 2 202 191 HOH HOH A . H 4 HOH 3 203 202 HOH HOH A . H 4 HOH 4 204 206 HOH HOH A . H 4 HOH 5 205 143 HOH HOH A . H 4 HOH 6 206 351 HOH HOH A . H 4 HOH 7 207 174 HOH HOH A . H 4 HOH 8 208 122 HOH HOH A . H 4 HOH 9 209 114 HOH HOH A . H 4 HOH 10 210 129 HOH HOH A . H 4 HOH 11 211 149 HOH HOH A . H 4 HOH 12 212 134 HOH HOH A . H 4 HOH 13 213 145 HOH HOH A . H 4 HOH 14 214 420 HOH HOH A . H 4 HOH 15 215 168 HOH HOH A . H 4 HOH 16 216 238 HOH HOH A . H 4 HOH 17 217 221 HOH HOH A . H 4 HOH 18 218 158 HOH HOH A . H 4 HOH 19 219 130 HOH HOH A . H 4 HOH 20 220 195 HOH HOH A . H 4 HOH 21 221 161 HOH HOH A . H 4 HOH 22 222 226 HOH HOH A . H 4 HOH 23 223 169 HOH HOH A . H 4 HOH 24 224 406 HOH HOH A . H 4 HOH 25 225 108 HOH HOH A . H 4 HOH 26 226 113 HOH HOH A . H 4 HOH 27 227 353 HOH HOH A . H 4 HOH 28 228 284 HOH HOH A . H 4 HOH 29 229 357 HOH HOH A . H 4 HOH 30 230 112 HOH HOH A . H 4 HOH 31 231 175 HOH HOH A . H 4 HOH 32 232 328 HOH HOH A . H 4 HOH 33 233 152 HOH HOH A . H 4 HOH 34 234 287 HOH HOH A . H 4 HOH 35 235 128 HOH HOH A . H 4 HOH 36 236 200 HOH HOH A . H 4 HOH 37 237 162 HOH HOH A . H 4 HOH 38 238 234 HOH HOH A . H 4 HOH 39 239 242 HOH HOH A . H 4 HOH 40 240 245 HOH HOH A . H 4 HOH 41 241 331 HOH HOH A . H 4 HOH 42 242 212 HOH HOH A . H 4 HOH 43 243 368 HOH HOH A . H 4 HOH 44 244 102 HOH HOH A . H 4 HOH 45 245 366 HOH HOH A . H 4 HOH 46 246 229 HOH HOH A . H 4 HOH 47 247 132 HOH HOH A . H 4 HOH 48 248 107 HOH HOH A . H 4 HOH 49 249 159 HOH HOH A . H 4 HOH 50 250 190 HOH HOH A . H 4 HOH 51 251 187 HOH HOH A . H 4 HOH 52 252 315 HOH HOH A . H 4 HOH 53 253 189 HOH HOH A . H 4 HOH 54 254 211 HOH HOH A . H 4 HOH 55 255 153 HOH HOH A . H 4 HOH 56 256 140 HOH HOH A . H 4 HOH 57 257 124 HOH HOH A . H 4 HOH 58 258 116 HOH HOH A . H 4 HOH 59 259 241 HOH HOH A . H 4 HOH 60 260 141 HOH HOH A . H 4 HOH 61 261 264 HOH HOH A . H 4 HOH 62 262 235 HOH HOH A . H 4 HOH 63 263 123 HOH HOH A . H 4 HOH 64 264 240 HOH HOH A . H 4 HOH 65 265 150 HOH HOH A . H 4 HOH 66 266 254 HOH HOH A . H 4 HOH 67 267 339 HOH HOH A . H 4 HOH 68 268 296 HOH HOH A . H 4 HOH 69 269 370 HOH HOH A . H 4 HOH 70 270 374 HOH HOH A . H 4 HOH 71 271 308 HOH HOH A . H 4 HOH 72 272 285 HOH HOH A . H 4 HOH 73 273 263 HOH HOH A . H 4 HOH 74 274 275 HOH HOH A . H 4 HOH 75 275 257 HOH HOH A . H 4 HOH 76 276 302 HOH HOH A . H 4 HOH 77 277 396 HOH HOH A . H 4 HOH 78 278 278 HOH HOH A . H 4 HOH 79 279 371 HOH HOH A . H 4 HOH 80 280 289 HOH HOH A . H 4 HOH 81 281 385 HOH HOH A . H 4 HOH 82 282 271 HOH HOH A . H 4 HOH 83 283 431 HOH HOH A . H 4 HOH 84 284 421 HOH HOH A . H 4 HOH 85 285 393 HOH HOH A . H 4 HOH 86 286 304 HOH HOH A . H 4 HOH 87 287 401 HOH HOH A . H 4 HOH 88 288 250 HOH HOH A . H 4 HOH 89 289 326 HOH HOH A . H 4 HOH 90 290 256 HOH HOH A . H 4 HOH 91 291 319 HOH HOH A . H 4 HOH 92 292 428 HOH HOH A . H 4 HOH 93 293 253 HOH HOH A . H 4 HOH 94 294 268 HOH HOH A . H 4 HOH 95 295 266 HOH HOH A . H 4 HOH 96 296 251 HOH HOH A . H 4 HOH 97 297 355 HOH HOH A . H 4 HOH 98 298 311 HOH HOH A . H 4 HOH 99 299 450 HOH HOH A . H 4 HOH 100 300 375 HOH HOH A . H 4 HOH 101 301 362 HOH HOH A . H 4 HOH 102 302 367 HOH HOH A . I 4 HOH 1 101 146 HOH HOH B . I 4 HOH 2 102 381 HOH HOH B . I 4 HOH 3 103 135 HOH HOH B . I 4 HOH 4 104 330 HOH HOH B . I 4 HOH 5 105 178 HOH HOH B . I 4 HOH 6 106 218 HOH HOH B . I 4 HOH 7 107 451 HOH HOH B . I 4 HOH 8 108 425 HOH HOH B . I 4 HOH 9 109 188 HOH HOH B . I 4 HOH 10 110 127 HOH HOH B . I 4 HOH 11 111 228 HOH HOH B . I 4 HOH 12 112 274 HOH HOH B . I 4 HOH 13 113 180 HOH HOH B . I 4 HOH 14 114 160 HOH HOH B . I 4 HOH 15 115 247 HOH HOH B . I 4 HOH 16 116 279 HOH HOH B . I 4 HOH 17 117 119 HOH HOH B . I 4 HOH 18 118 429 HOH HOH B . I 4 HOH 19 119 333 HOH HOH B . I 4 HOH 20 120 184 HOH HOH B . I 4 HOH 21 121 177 HOH HOH B . I 4 HOH 22 122 320 HOH HOH B . I 4 HOH 23 123 403 HOH HOH B . I 4 HOH 24 124 139 HOH HOH B . I 4 HOH 25 125 138 HOH HOH B . I 4 HOH 26 126 111 HOH HOH B . I 4 HOH 27 127 117 HOH HOH B . I 4 HOH 28 128 156 HOH HOH B . I 4 HOH 29 129 349 HOH HOH B . I 4 HOH 30 130 144 HOH HOH B . I 4 HOH 31 131 142 HOH HOH B . I 4 HOH 32 132 179 HOH HOH B . I 4 HOH 33 133 337 HOH HOH B . I 4 HOH 34 134 199 HOH HOH B . I 4 HOH 35 135 105 HOH HOH B . I 4 HOH 36 136 120 HOH HOH B . I 4 HOH 37 137 104 HOH HOH B . I 4 HOH 38 138 300 HOH HOH B . I 4 HOH 39 139 103 HOH HOH B . I 4 HOH 40 140 203 HOH HOH B . I 4 HOH 41 141 172 HOH HOH B . I 4 HOH 42 142 151 HOH HOH B . I 4 HOH 43 143 217 HOH HOH B . I 4 HOH 44 144 170 HOH HOH B . I 4 HOH 45 145 232 HOH HOH B . I 4 HOH 46 146 101 HOH HOH B . I 4 HOH 47 147 348 HOH HOH B . I 4 HOH 48 148 388 HOH HOH B . I 4 HOH 49 149 223 HOH HOH B . I 4 HOH 50 150 394 HOH HOH B . I 4 HOH 51 151 437 HOH HOH B . I 4 HOH 52 152 290 HOH HOH B . I 4 HOH 53 153 345 HOH HOH B . I 4 HOH 54 154 430 HOH HOH B . I 4 HOH 55 155 438 HOH HOH B . I 4 HOH 56 156 258 HOH HOH B . I 4 HOH 57 157 433 HOH HOH B . I 4 HOH 58 158 314 HOH HOH B . I 4 HOH 59 159 399 HOH HOH B . I 4 HOH 60 160 273 HOH HOH B . I 4 HOH 61 161 341 HOH HOH B . I 4 HOH 62 162 359 HOH HOH B . I 4 HOH 63 163 267 HOH HOH B . I 4 HOH 64 164 352 HOH HOH B . I 4 HOH 65 165 395 HOH HOH B . I 4 HOH 66 166 260 HOH HOH B . I 4 HOH 67 167 288 HOH HOH B . I 4 HOH 68 168 252 HOH HOH B . I 4 HOH 69 169 255 HOH HOH B . I 4 HOH 70 170 281 HOH HOH B . I 4 HOH 71 171 292 HOH HOH B . I 4 HOH 72 172 361 HOH HOH B . I 4 HOH 73 173 378 HOH HOH B . I 4 HOH 74 174 265 HOH HOH B . I 4 HOH 75 175 407 HOH HOH B . I 4 HOH 76 176 262 HOH HOH B . I 4 HOH 77 177 415 HOH HOH B . I 4 HOH 78 178 360 HOH HOH B . I 4 HOH 79 179 436 HOH HOH B . J 4 HOH 1 201 414 HOH HOH C . J 4 HOH 2 202 167 HOH HOH C . J 4 HOH 3 203 405 HOH HOH C . J 4 HOH 4 204 443 HOH HOH C . J 4 HOH 5 205 115 HOH HOH C . J 4 HOH 6 206 364 HOH HOH C . J 4 HOH 7 207 397 HOH HOH C . J 4 HOH 8 208 163 HOH HOH C . J 4 HOH 9 209 236 HOH HOH C . J 4 HOH 10 210 376 HOH HOH C . J 4 HOH 11 211 299 HOH HOH C . J 4 HOH 12 212 208 HOH HOH C . J 4 HOH 13 213 411 HOH HOH C . J 4 HOH 14 214 239 HOH HOH C . J 4 HOH 15 215 209 HOH HOH C . J 4 HOH 16 216 204 HOH HOH C . J 4 HOH 17 217 342 HOH HOH C . J 4 HOH 18 218 276 HOH HOH C . J 4 HOH 19 219 248 HOH HOH C . J 4 HOH 20 220 303 HOH HOH C . J 4 HOH 21 221 386 HOH HOH C . J 4 HOH 22 222 306 HOH HOH C . J 4 HOH 23 223 118 HOH HOH C . J 4 HOH 24 224 237 HOH HOH C . J 4 HOH 25 225 198 HOH HOH C . J 4 HOH 26 226 136 HOH HOH C . J 4 HOH 27 227 110 HOH HOH C . J 4 HOH 28 228 126 HOH HOH C . J 4 HOH 29 229 321 HOH HOH C . J 4 HOH 30 230 210 HOH HOH C . J 4 HOH 31 231 171 HOH HOH C . J 4 HOH 32 232 185 HOH HOH C . J 4 HOH 33 233 294 HOH HOH C . J 4 HOH 34 234 194 HOH HOH C . J 4 HOH 35 235 147 HOH HOH C . J 4 HOH 36 236 243 HOH HOH C . J 4 HOH 37 237 182 HOH HOH C . J 4 HOH 38 238 164 HOH HOH C . J 4 HOH 39 239 205 HOH HOH C . J 4 HOH 40 240 225 HOH HOH C . J 4 HOH 41 241 327 HOH HOH C . J 4 HOH 42 242 301 HOH HOH C . J 4 HOH 43 243 387 HOH HOH C . J 4 HOH 44 244 196 HOH HOH C . J 4 HOH 45 245 121 HOH HOH C . J 4 HOH 46 246 305 HOH HOH C . J 4 HOH 47 247 193 HOH HOH C . J 4 HOH 48 248 322 HOH HOH C . J 4 HOH 49 249 213 HOH HOH C . J 4 HOH 50 250 131 HOH HOH C . J 4 HOH 51 251 382 HOH HOH C . J 4 HOH 52 252 148 HOH HOH C . J 4 HOH 53 253 166 HOH HOH C . J 4 HOH 54 254 454 HOH HOH C . J 4 HOH 55 255 363 HOH HOH C . J 4 HOH 56 256 449 HOH HOH C . J 4 HOH 57 257 379 HOH HOH C . J 4 HOH 58 258 106 HOH HOH C . J 4 HOH 59 259 329 HOH HOH C . J 4 HOH 60 260 324 HOH HOH C . J 4 HOH 61 261 338 HOH HOH C . J 4 HOH 62 262 336 HOH HOH C . J 4 HOH 63 263 452 HOH HOH C . J 4 HOH 64 264 231 HOH HOH C . J 4 HOH 65 265 412 HOH HOH C . J 4 HOH 66 266 448 HOH HOH C . J 4 HOH 67 267 455 HOH HOH C . J 4 HOH 68 268 277 HOH HOH C . J 4 HOH 69 269 419 HOH HOH C . J 4 HOH 70 270 233 HOH HOH C . J 4 HOH 71 271 418 HOH HOH C . J 4 HOH 72 272 259 HOH HOH C . J 4 HOH 73 273 426 HOH HOH C . J 4 HOH 74 274 373 HOH HOH C . J 4 HOH 75 275 343 HOH HOH C . J 4 HOH 76 276 432 HOH HOH C . J 4 HOH 77 277 444 HOH HOH C . J 4 HOH 78 278 291 HOH HOH C . J 4 HOH 79 279 340 HOH HOH C . J 4 HOH 80 280 417 HOH HOH C . J 4 HOH 81 281 442 HOH HOH C . J 4 HOH 82 282 424 HOH HOH C . J 4 HOH 83 283 445 HOH HOH C . J 4 HOH 84 284 298 HOH HOH C . J 4 HOH 85 285 323 HOH HOH C . J 4 HOH 86 286 261 HOH HOH C . J 4 HOH 87 287 439 HOH HOH C . J 4 HOH 88 288 318 HOH HOH C . J 4 HOH 89 289 447 HOH HOH C . J 4 HOH 90 290 416 HOH HOH C . J 4 HOH 91 291 453 HOH HOH C . J 4 HOH 92 292 446 HOH HOH C . K 4 HOH 1 101 224 HOH HOH D . K 4 HOH 2 102 286 HOH HOH D . K 4 HOH 3 103 280 HOH HOH D . K 4 HOH 4 104 222 HOH HOH D . K 4 HOH 5 105 181 HOH HOH D . K 4 HOH 6 106 165 HOH HOH D . K 4 HOH 7 107 282 HOH HOH D . K 4 HOH 8 108 244 HOH HOH D . K 4 HOH 9 109 137 HOH HOH D . K 4 HOH 10 110 293 HOH HOH D . K 4 HOH 11 111 230 HOH HOH D . K 4 HOH 12 112 183 HOH HOH D . K 4 HOH 13 113 109 HOH HOH D . K 4 HOH 14 114 157 HOH HOH D . K 4 HOH 15 115 125 HOH HOH D . K 4 HOH 16 116 409 HOH HOH D . K 4 HOH 17 117 201 HOH HOH D . K 4 HOH 18 118 335 HOH HOH D . K 4 HOH 19 119 197 HOH HOH D . K 4 HOH 20 120 220 HOH HOH D . K 4 HOH 21 121 207 HOH HOH D . K 4 HOH 22 122 307 HOH HOH D . K 4 HOH 23 123 214 HOH HOH D . K 4 HOH 24 124 272 HOH HOH D . K 4 HOH 25 125 216 HOH HOH D . K 4 HOH 26 126 334 HOH HOH D . K 4 HOH 27 127 154 HOH HOH D . K 4 HOH 28 128 133 HOH HOH D . K 4 HOH 29 129 246 HOH HOH D . K 4 HOH 30 130 358 HOH HOH D . K 4 HOH 31 131 297 HOH HOH D . K 4 HOH 32 132 186 HOH HOH D . K 4 HOH 33 133 219 HOH HOH D . K 4 HOH 34 134 312 HOH HOH D . K 4 HOH 35 135 173 HOH HOH D . K 4 HOH 36 136 215 HOH HOH D . K 4 HOH 37 137 325 HOH HOH D . K 4 HOH 38 138 408 HOH HOH D . K 4 HOH 39 139 155 HOH HOH D . K 4 HOH 40 140 192 HOH HOH D . K 4 HOH 41 141 332 HOH HOH D . K 4 HOH 42 142 176 HOH HOH D . K 4 HOH 43 143 347 HOH HOH D . K 4 HOH 44 144 249 HOH HOH D . K 4 HOH 45 145 227 HOH HOH D . K 4 HOH 46 146 317 HOH HOH D . K 4 HOH 47 147 389 HOH HOH D . K 4 HOH 48 148 410 HOH HOH D . K 4 HOH 49 149 372 HOH HOH D . K 4 HOH 50 150 413 HOH HOH D . K 4 HOH 51 151 346 HOH HOH D . K 4 HOH 52 152 356 HOH HOH D . K 4 HOH 53 153 384 HOH HOH D . K 4 HOH 54 154 390 HOH HOH D . K 4 HOH 55 155 422 HOH HOH D . K 4 HOH 56 156 400 HOH HOH D . K 4 HOH 57 157 383 HOH HOH D . K 4 HOH 58 158 283 HOH HOH D . K 4 HOH 59 159 269 HOH HOH D . K 4 HOH 60 160 310 HOH HOH D . K 4 HOH 61 161 398 HOH HOH D . K 4 HOH 62 162 313 HOH HOH D . K 4 HOH 63 163 402 HOH HOH D . K 4 HOH 64 164 295 HOH HOH D . K 4 HOH 65 165 423 HOH HOH D . K 4 HOH 66 166 440 HOH HOH D . K 4 HOH 67 167 380 HOH HOH D . K 4 HOH 68 168 354 HOH HOH D . K 4 HOH 69 169 427 HOH HOH D . K 4 HOH 70 170 316 HOH HOH D . K 4 HOH 71 171 392 HOH HOH D . K 4 HOH 72 172 365 HOH HOH D . K 4 HOH 73 173 391 HOH HOH D . K 4 HOH 74 174 377 HOH HOH D . K 4 HOH 75 175 404 HOH HOH D . K 4 HOH 76 176 350 HOH HOH D . K 4 HOH 77 177 434 HOH HOH D . K 4 HOH 78 178 441 HOH HOH D . K 4 HOH 79 179 344 HOH HOH D . K 4 HOH 80 180 369 HOH HOH D . K 4 HOH 81 181 309 HOH HOH D . K 4 HOH 82 182 435 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,H,I 2 1 C,D,G,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1120 ? 1 MORE -2 ? 1 'SSA (A^2)' 3680 ? 2 'ABSA (A^2)' 1350 ? 2 MORE -4 ? 2 'SSA (A^2)' 3710 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 214 ? H HOH . 2 1 A HOH 284 ? H HOH . 3 1 B HOH 150 ? I HOH . 4 1 C HOH 204 ? J HOH . 5 1 C HOH 277 ? J HOH . 6 1 C HOH 282 ? J HOH . 7 1 C HOH 292 ? J HOH . 8 1 D HOH 155 ? K HOH . 9 1 D HOH 165 ? K HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-08-19 2 'Structure model' 1 1 2020-01-29 3 'Structure model' 1 2 2022-07-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Refinement description' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' computing 2 2 'Structure model' diffrn_radiation 3 2 'Structure model' diffrn_source 4 2 'Structure model' pdbx_struct_oper_list 5 2 'Structure model' software 6 3 'Structure model' citation 7 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_computing.pdbx_data_reduction_ds' 2 2 'Structure model' '_diffrn_radiation.pdbx_diffrn_protocol' 3 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 5 2 'Structure model' '_software.name' 6 3 'Structure model' '_citation.country' 7 3 'Structure model' '_citation.journal_abbrev' 8 3 'Structure model' '_citation.journal_id_CSD' 9 3 'Structure model' '_citation.journal_id_ISSN' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 3 'Structure model' '_citation.pdbx_database_id_DOI' 14 3 'Structure model' '_citation.pdbx_database_id_PubMed' 15 3 'Structure model' '_citation.title' 16 3 'Structure model' '_citation.year' 17 3 'Structure model' '_database_2.pdbx_DOI' 18 3 'Structure model' '_database_2.pdbx_database_accession' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.600 _diffrn_reflns.pdbx_d_res_low 51.210 _diffrn_reflns.pdbx_number_obs 32414 _diffrn_reflns.pdbx_Rmerge_I_obs 0.062 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 0.98 _diffrn_reflns.pdbx_redundancy 3.60 _diffrn_reflns.pdbx_rejects 882 _diffrn_reflns.pdbx_percent_possible_obs 95.70 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.number 117593 _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 3.45 51.21 ? 353 0.041 ? 1.130 3.58 ? 1 2.74 3.45 ? 137 0.046 ? 0.910 3.62 ? 1 2.39 2.74 ? 70 0.069 ? 0.810 3.61 ? 1 2.17 2.39 ? 53 0.089 ? 0.800 3.60 ? 1 2.02 2.17 ? 44 0.109 ? 0.870 3.59 ? 1 1.90 2.02 ? 50 0.146 ? 0.900 3.61 ? 1 1.80 1.90 ? 30 0.172 ? 0.980 3.59 ? 1 1.72 1.80 ? 44 0.206 ? 1.070 3.60 ? 1 1.66 1.72 ? 50 0.236 ? 1.120 3.60 ? 1 1.60 1.66 ? 51 0.323 ? 1.230 3.62 ? # _pdbx_phasing_dm.entry_id 4U6K _pdbx_phasing_dm.fom_acentric 0.640 _pdbx_phasing_dm.fom_centric 0.650 _pdbx_phasing_dm.fom 0.640 _pdbx_phasing_dm.reflns_acentric 19193 _pdbx_phasing_dm.reflns_centric 2014 _pdbx_phasing_dm.reflns 21207 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 1.500 1.600 ? ? 0.180 0.130 0.170 3660 272 3932 1.600 1.900 ? ? 0.570 0.510 0.560 5849 470 6319 1.900 2.100 ? ? 0.780 0.700 0.780 3292 308 3600 2.100 2.700 ? ? 0.870 0.780 0.870 3243 371 3614 2.700 4.300 ? ? 0.940 0.910 0.940 2466 389 2855 # _phasing.method MAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrystalClear ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? CNS ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? SOLVE ? ? ? . 5 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? d*TREK ? ? ? . 6 ? phasing ? ? ? ? ? ? ? ? ? ? ? SOLVE ? ? ? . 7 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 208 ? ? O A HOH 296 ? ? 2.02 2 1 O D HOH 124 ? ? O D HOH 148 ? ? 2.07 3 1 O C HOH 263 ? ? O D HOH 145 ? ? 2.13 4 1 O A HOH 295 ? ? O A HOH 296 ? ? 2.14 5 1 O A HOH 296 ? ? O A HOH 299 ? ? 2.15 6 1 O A HOH 282 ? ? O C HOH 276 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 281 ? ? 1_555 O B HOH 173 ? ? 8_556 2.09 2 1 O A HOH 250 ? ? 1_555 O B HOH 107 ? ? 8_556 2.11 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A A 2 ? ? OP1 A A 2 ? ? 1.601 1.485 0.116 0.017 N 2 1 P A A 2 ? ? OP2 A A 2 ? ? 1.604 1.485 0.119 0.017 N 3 1 P A A 3 ? ? OP1 A A 3 ? ? 1.601 1.485 0.116 0.017 N 4 1 P A A 3 ? ? OP2 A A 3 ? ? 1.604 1.485 0.119 0.017 N 5 1 P A G 4 ? ? OP1 A G 4 ? ? 1.592 1.485 0.107 0.017 N 6 1 P A G 4 ? ? OP2 A G 4 ? ? 1.598 1.485 0.113 0.017 N 7 1 P A A 5 ? ? OP1 A A 5 ? ? 1.596 1.485 0.111 0.017 N 8 1 P A A 5 ? ? OP2 A A 5 ? ? 1.598 1.485 0.113 0.017 N 9 1 P A A 6 ? ? OP1 A A 6 ? ? 1.596 1.485 0.111 0.017 N 10 1 P A A 6 ? ? OP2 A A 6 ? ? 1.610 1.485 0.125 0.017 N 11 1 P A G 7 ? ? OP1 A G 7 ? ? 1.592 1.485 0.107 0.017 N 12 1 P A G 7 ? ? OP2 A G 7 ? ? 1.603 1.485 0.118 0.017 N 13 1 P A A 8 ? ? OP1 A A 8 ? ? 1.593 1.485 0.108 0.017 N 14 1 P A A 8 ? ? OP2 A A 8 ? ? 1.598 1.485 0.113 0.017 N 15 1 P A G 9 ? ? OP1 A G 9 ? ? 1.594 1.485 0.109 0.017 N 16 1 P A G 9 ? ? OP2 A G 9 ? ? 1.603 1.485 0.118 0.017 N 17 1 P B DC 3 ? ? OP1 B DC 3 ? ? 1.598 1.485 0.113 0.017 N 18 1 P B DC 3 ? ? OP2 B DC 3 ? ? 1.612 1.485 0.127 0.017 N 19 1 P B DT 4 ? ? OP1 B DT 4 ? ? 1.594 1.485 0.109 0.017 N 20 1 P B DT 4 ? ? OP2 B DT 4 ? ? 1.596 1.485 0.111 0.017 N 21 1 P B DT 5 ? ? OP1 B DT 5 ? ? 1.600 1.485 0.115 0.017 N 22 1 P B DT 5 ? ? OP2 B DT 5 ? ? 1.603 1.485 0.118 0.017 N 23 1 P B DC 6 ? ? OP1 B DC 6 ? ? 1.599 1.485 0.114 0.017 N 24 1 P B DC 6 ? ? OP2 B DC 6 ? ? 1.605 1.485 0.120 0.017 N 25 1 P B DT 7 ? ? OP1 B DT 7 ? ? 1.595 1.485 0.110 0.017 N 26 1 P B DT 7 ? ? OP2 B DT 7 ? ? 1.599 1.485 0.114 0.017 N 27 1 P C A 2 ? ? OP1 C A 2 ? ? 1.599 1.485 0.114 0.017 N 28 1 P C A 2 ? ? OP2 C A 2 ? ? 1.606 1.485 0.121 0.017 N 29 1 P C A 3 ? ? OP1 C A 3 ? ? 1.601 1.485 0.116 0.017 N 30 1 P C A 3 ? ? OP2 C A 3 ? ? 1.605 1.485 0.120 0.017 N 31 1 P C G 4 ? ? OP1 C G 4 ? ? 1.602 1.485 0.117 0.017 N 32 1 P C G 4 ? ? OP2 C G 4 ? ? 1.607 1.485 0.122 0.017 N 33 1 P C A 5 ? ? OP1 C A 5 ? ? 1.603 1.485 0.118 0.017 N 34 1 P C A 5 ? ? OP2 C A 5 ? ? 1.609 1.485 0.124 0.017 N 35 1 P C A 6 ? ? OP1 C A 6 ? ? 1.603 1.485 0.118 0.017 N 36 1 P C A 6 ? ? OP2 C A 6 ? ? 1.606 1.485 0.121 0.017 N 37 1 P C G 7 ? ? OP1 C G 7 ? ? 1.600 1.485 0.115 0.017 N 38 1 P C G 7 ? ? OP2 C G 7 ? ? 1.611 1.485 0.126 0.017 N 39 1 P C A 8 ? ? OP1 C A 8 ? ? 1.598 1.485 0.113 0.017 N 40 1 P C A 8 ? ? OP2 C A 8 ? ? 1.606 1.485 0.121 0.017 N 41 1 P C G 9 ? ? OP1 C G 9 ? ? 1.601 1.485 0.116 0.017 N 42 1 P C G 9 ? ? OP2 C G 9 ? ? 1.602 1.485 0.117 0.017 N 43 1 P D DC 3 ? ? OP1 D DC 3 ? ? 1.600 1.485 0.115 0.017 N 44 1 P D DC 3 ? ? OP2 D DC 3 ? ? 1.603 1.485 0.118 0.017 N 45 1 P D DT 4 ? ? OP1 D DT 4 ? ? 1.601 1.485 0.116 0.017 N 46 1 P D DT 4 ? ? OP2 D DT 4 ? ? 1.607 1.485 0.122 0.017 N 47 1 P D DT 5 ? ? OP1 D DT 5 ? ? 1.601 1.485 0.116 0.017 N 48 1 P D DT 5 ? ? OP2 D DT 5 ? ? 1.607 1.485 0.122 0.017 N 49 1 P D DC 6 ? ? OP1 D DC 6 ? ? 1.595 1.485 0.110 0.017 N 50 1 P D DC 6 ? ? OP2 D DC 6 ? ? 1.607 1.485 0.122 0.017 N 51 1 P D DT 7 ? ? OP1 D DT 7 ? ? 1.603 1.485 0.118 0.017 N 52 1 P D DT 7 ? ? OP2 D DT 7 ? ? 1.607 1.485 0.122 0.017 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 3 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 3 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 100.09 _pdbx_validate_rmsd_angle.angle_target_value 105.70 _pdbx_validate_rmsd_angle.angle_deviation -5.61 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 302 ? 6.52 . 2 1 O ? C HOH 292 ? 5.99 . # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4U6K 'double helix' 4U6K 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B NCU 9 1_555 -0.343 -0.098 -0.183 -10.833 1.503 -0.560 1 A_G1:NCU9_B A 1 ? B 9 ? 19 1 1 A A 2 1_555 B NTT 8 1_555 -0.088 -0.123 0.029 -1.189 -5.052 6.317 2 A_A2:NTT8_B A 2 ? B 8 ? 20 1 1 A A 3 1_555 B DT 7 1_555 -0.060 -0.168 -0.179 2.563 -2.946 3.394 3 A_A3:DT7_B A 3 ? B 7 ? 20 1 1 A G 4 1_555 B DC 6 1_555 -0.322 -0.137 -0.191 -2.440 -4.404 2.202 4 A_G4:DC6_B A 4 ? B 6 ? 19 1 1 A A 5 1_555 B DT 5 1_555 0.004 -0.168 -0.349 -7.014 -7.515 -1.191 5 A_A5:DT5_B A 5 ? B 5 ? 20 1 1 A A 6 1_555 B DT 4 1_555 0.130 -0.130 -0.279 -9.106 -4.353 -0.055 6 A_A6:DT4_B A 6 ? B 4 ? 20 1 1 A G 7 1_555 B DC 3 1_555 -0.199 -0.076 -0.286 -9.813 -3.210 1.846 7 A_G7:DC3_B A 7 ? B 3 ? 19 1 1 A A 8 1_555 B NTT 2 1_555 0.022 -0.087 -0.139 -0.473 3.212 -0.926 8 A_A8:NTT2_B A 8 ? B 2 ? 20 1 1 A G 9 1_555 B NCU 1 1_555 -0.347 -0.041 0.057 19.895 1.513 0.868 9 A_G9:NCU1_B A 9 ? B 1 ? 19 1 1 D NCU 1 1_555 C G 9 1_555 0.208 -0.129 -0.152 5.152 -8.707 -0.458 10 D_NCU1:G9_C D 1 ? C 9 ? 19 1 1 D NTT 2 1_555 C A 8 1_555 -0.102 -0.121 -0.126 6.353 -8.258 0.051 11 D_NTT2:A8_C D 2 ? C 8 ? 20 1 1 D DC 3 1_555 C G 7 1_555 0.261 -0.182 -0.059 2.933 -7.061 1.063 12 D_DC3:G7_C D 3 ? C 7 ? 19 1 1 D DT 4 1_555 C A 6 1_555 -0.085 -0.163 -0.059 4.421 -6.817 1.846 13 D_DT4:A6_C D 4 ? C 6 ? 20 1 1 D DT 5 1_555 C A 5 1_555 -0.005 -0.135 -0.335 11.814 -7.505 0.930 14 D_DT5:A5_C D 5 ? C 5 ? 20 1 1 D DC 6 1_555 C G 4 1_555 0.269 -0.188 -0.166 4.418 -6.989 2.729 15 D_DC6:G4_C D 6 ? C 4 ? 19 1 1 D DT 7 1_555 C A 3 1_555 0.027 -0.122 -0.156 3.142 -4.048 2.501 16 D_DT7:A3_C D 7 ? C 3 ? 20 1 1 D NTT 8 1_555 C A 2 1_555 0.140 -0.185 -0.116 3.019 -8.018 5.673 17 D_NTT8:A2_C D 8 ? C 2 ? 20 1 1 D NCU 9 1_555 C G 1 1_555 0.294 -0.078 -0.073 3.743 -7.162 0.847 18 D_NCU9:G1_C D 9 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B NCU 9 1_555 A A 2 1_555 B NTT 8 1_555 0.193 -2.024 3.109 -2.351 5.704 26.988 -5.455 -0.909 2.608 12.023 4.955 27.671 1 AA_G1A2:NTT8NCU9_BB A 1 ? B 9 ? A 2 ? B 8 ? 1 A A 2 1_555 B NTT 8 1_555 A A 3 1_555 B DT 7 1_555 -0.600 -1.765 3.251 -1.046 4.758 30.055 -4.271 0.942 2.961 9.099 2.001 30.438 2 AA_A2A3:DT7NTT8_BB A 2 ? B 8 ? A 3 ? B 7 ? 1 A A 3 1_555 B DT 7 1_555 A G 4 1_555 B DC 6 1_555 0.070 -2.335 3.557 -1.135 1.161 26.238 -5.468 -0.482 3.446 2.554 2.498 26.287 3 AA_A3G4:DC6DT7_BB A 3 ? B 7 ? A 4 ? B 6 ? 1 A G 4 1_555 B DC 6 1_555 A A 5 1_555 B DT 5 1_555 -0.909 -1.922 3.408 0.964 5.891 32.903 -4.305 1.738 3.001 10.295 -1.685 33.426 4 AA_G4A5:DT5DC6_BB A 4 ? B 6 ? A 5 ? B 5 ? 1 A A 5 1_555 B DT 5 1_555 A A 6 1_555 B DT 4 1_555 0.406 -1.875 3.404 0.363 6.315 31.074 -4.580 -0.678 2.979 11.637 -0.669 31.695 5 AA_A5A6:DT4DT5_BB A 5 ? B 5 ? A 6 ? B 4 ? 1 A A 6 1_555 B DT 4 1_555 A G 7 1_555 B DC 3 1_555 0.605 -2.354 3.462 1.845 3.786 25.693 -6.278 -0.830 3.124 8.441 -4.114 26.031 6 AA_A6G7:DC3DT4_BB A 6 ? B 4 ? A 7 ? B 3 ? 1 A G 7 1_555 B DC 3 1_555 A A 8 1_555 B NTT 2 1_555 -1.106 -2.052 3.103 -1.026 8.282 27.813 -5.677 2.012 2.442 16.758 2.076 29.015 7 AA_G7A8:NTT2DC3_BB A 7 ? B 3 ? A 8 ? B 2 ? 1 A A 8 1_555 B NTT 2 1_555 A G 9 1_555 B NCU 1 1_555 0.027 -1.440 2.919 -2.390 6.631 24.375 -4.881 -0.638 2.434 15.299 5.516 25.359 8 AA_A8G9:NCU1NTT2_BB A 8 ? B 2 ? A 9 ? B 1 ? 1 A G 9 1_555 B NCU 1 1_555 D NCU 1 1_555 C G 9 1_555 -0.756 -1.640 3.437 -4.216 4.855 81.937 -1.374 0.466 3.382 3.697 3.210 82.144 9 AD_G9NCU1:G9NCU1_CB A 9 ? B 1 ? D 1 ? C 9 ? 1 D NCU 1 1_555 C G 9 1_555 D NTT 2 1_555 C A 8 1_555 -0.376 -2.253 3.307 -1.897 2.268 29.047 -4.957 0.338 3.143 4.507 3.771 29.194 10 DD_NCU1NTT2:A8G9_CC D 1 ? C 9 ? D 2 ? C 8 ? 1 D NTT 2 1_555 C A 8 1_555 D DC 3 1_555 C G 7 1_555 0.235 -1.812 3.338 -0.086 6.210 33.028 -4.122 -0.421 2.958 10.804 0.149 33.591 11 DD_NTT2DC3:G7A8_CC D 2 ? C 8 ? D 3 ? C 7 ? 1 D DC 3 1_555 C G 7 1_555 D DT 4 1_555 C A 6 1_555 -0.473 -1.943 3.255 -0.946 4.030 28.040 -4.859 0.757 2.967 8.260 1.938 28.338 12 DD_DC3DT4:A6G7_CC D 3 ? C 7 ? D 4 ? C 6 ? 1 D DT 4 1_555 C A 6 1_555 D DT 5 1_555 C A 5 1_555 -0.214 -1.495 3.148 0.247 5.864 29.525 -3.982 0.459 2.804 11.364 -0.478 30.090 13 DD_DT4DT5:A5A6_CC D 4 ? C 6 ? D 5 ? C 5 ? 1 D DT 5 1_555 C A 5 1_555 D DC 6 1_555 C G 4 1_555 0.476 -2.018 3.462 -1.614 7.951 32.789 -4.744 -1.077 2.882 13.823 2.806 33.751 14 DD_DT5DC6:G4A5_CC D 5 ? C 5 ? D 6 ? C 4 ? 1 D DC 6 1_555 C G 4 1_555 D DT 7 1_555 C A 3 1_555 -0.434 -2.051 3.382 -0.722 4.326 27.634 -5.256 0.729 3.041 8.985 1.500 27.973 15 DD_DC6DT7:A3G4_CC D 6 ? C 4 ? D 7 ? C 3 ? 1 D DT 7 1_555 C A 3 1_555 D NTT 8 1_555 C A 2 1_555 0.364 -1.600 3.311 0.994 5.304 30.802 -3.948 -0.492 3.011 9.889 -1.853 31.260 16 DD_DT7NTT8:A2A3_CC D 7 ? C 3 ? D 8 ? C 2 ? 1 D NTT 8 1_555 C A 2 1_555 D NCU 9 1_555 C G 1 1_555 0.575 -2.197 3.191 3.702 7.003 31.566 -5.043 -0.435 2.702 12.626 -6.674 32.520 17 DD_NTT8NCU9:G1A2_CC D 8 ? C 2 ? D 9 ? C 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'COBALT HEXAMMINE(III)' NCO 4 water HOH #