HEADER TRANSFERASE 01-AUG-14 4U89 TITLE 4'-PHOSPHOPANTETHEINYL TRANSFERASE PPTT FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPANTETHEINYL TRANSFERASE PPTT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOPANTETHEINYL TRANSFERASE PPTT (COA:APO- COMPND 5 [ACP]PANTETHEINEPHOSPHOTRANSFERASE) (COA:APO-[ACYL-CARRIER COMPND 6 PROTEIN]PANTETHEINEPHOSPHOTRANSFERASE); COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: PPTT, RV2794C, P425_02911, RVBD_2794C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTET KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.FAILLE,L.MOUREY,J.D.PEDELACQ REVDAT 2 02-SEP-15 4U89 1 REVDAT 1 26-AUG-15 4U89 0 JRNL AUTH A.FAILLE,S.GAVALDA,K.ROTTIER,L.MOUREY,J.D.PEDELACQ JRNL TITL X-RAY STRUCTURE OF THE 4'-PHOSPHOPANTETHEINYL TRANSFERASE JRNL TITL 2 PPTT FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 58563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2964 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3730 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1713 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.538 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1959 ; 0.025 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2706 ; 2.415 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 263 ; 6.102 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;30.360 ;22.055 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 304 ;13.052 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.413 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 306 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1485 ; 0.016 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1958 ; 8.273 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 86 ;38.913 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2092 ;17.021 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4U89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000202959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-12; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SOLEIL; ESRF REMARK 200 BEAMLINE : PROXIMA 1; ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011; 2.06640 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M; DECTRIS REMARK 200 PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58569 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.316 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.980 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PLATELETS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 1000, 0.2 M LISO4, 0.1 M REMARK 280 PHOSPHATE-CITRATE PH 4.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.41400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 24.41400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.90400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.63150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.90400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.63150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.41400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.90400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.63150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 24.41400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.90400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.63150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 228 REMARK 465 SER A 229 REMARK 465 GLY A 230 REMARK 465 GLY A 231 REMARK 465 THR A 232 REMARK 465 SER A 233 REMARK 465 GLY A 234 REMARK 465 GLY A 235 REMARK 465 GLY A 236 REMARK 465 SER A 237 REMARK 465 GLY A 238 REMARK 465 THR A 239 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 3 CG1 CG2 REMARK 470 ASP A 77 CG OD1 OD2 REMARK 470 ASP A 85 CG OD1 OD2 REMARK 470 ARG A 211 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 36 CD GLU A 36 OE1 0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 119 CB - CG - OD1 ANGL. DEV. = 9.4 DEGREES REMARK 500 ASP A 119 CB - CG - OD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 VAL A 125 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 CYS A 154 CA - CB - SG ANGL. DEV. = -11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 126 -47.64 -21.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 626 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 660 DISTANCE = 5.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 311 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 17 O REMARK 620 2 HOH A 435 O 108.4 REMARK 620 3 HOH A 444 O 99.5 81.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 89 O REMARK 620 2 HOH A 507 O 160.3 REMARK 620 3 HOH A 663 O 82.1 97.7 REMARK 620 4 HOH A 500 O 58.7 139.3 102.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 137 OD2 REMARK 620 2 THR A 141 OG1 100.9 REMARK 620 3 HOH A 513 O 93.6 136.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 177 O REMARK 620 2 THR A 179 OG1 114.9 REMARK 620 3 THR A 179 OG1 122.7 39.8 REMARK 620 4 HOH A 431 O 99.5 96.2 127.0 REMARK 620 5 HOH A 430 O 168.4 72.1 56.0 88.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 616 O REMARK 620 2 HOH A 540 O 108.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 543 O REMARK 620 2 HOH A 666 O 98.5 REMARK 620 3 HOH A 650 O 122.2 116.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 486 O REMARK 620 2 HOH A 487 O 121.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 417 O REMARK 620 2 HOH A 571 O 78.4 REMARK 620 3 HOH A 556 O 134.3 95.1 REMARK 620 4 HOH A 534 O 130.3 109.0 94.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PG4 A 314 O3 REMARK 620 2 PG4 A 314 O4 59.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 310 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 473 O REMARK 620 2 HOH A 403 O 110.0 REMARK 620 3 HOH A 456 O 76.8 112.9 REMARK 620 4 HOH A 484 O 106.8 105.6 137.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 312 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 519 O REMARK 620 2 HOH A 419 O 108.4 REMARK 620 3 HOH A 539 O 102.6 117.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 315 DBREF 4U89 A 1 227 UNP O33336 O33336_MYCTU 1 227 SEQADV 4U89 MET A -19 UNP O33336 INITIATING METHIONINE SEQADV 4U89 GLY A -18 UNP O33336 EXPRESSION TAG SEQADV 4U89 SER A -17 UNP O33336 EXPRESSION TAG SEQADV 4U89 SER A -16 UNP O33336 EXPRESSION TAG SEQADV 4U89 HIS A -15 UNP O33336 EXPRESSION TAG SEQADV 4U89 HIS A -14 UNP O33336 EXPRESSION TAG SEQADV 4U89 HIS A -13 UNP O33336 EXPRESSION TAG SEQADV 4U89 HIS A -12 UNP O33336 EXPRESSION TAG SEQADV 4U89 HIS A -11 UNP O33336 EXPRESSION TAG SEQADV 4U89 HIS A -10 UNP O33336 EXPRESSION TAG SEQADV 4U89 SER A -9 UNP O33336 EXPRESSION TAG SEQADV 4U89 SER A -8 UNP O33336 EXPRESSION TAG SEQADV 4U89 GLY A -7 UNP O33336 EXPRESSION TAG SEQADV 4U89 LEU A -6 UNP O33336 EXPRESSION TAG SEQADV 4U89 VAL A -5 UNP O33336 EXPRESSION TAG SEQADV 4U89 PRO A -4 UNP O33336 EXPRESSION TAG SEQADV 4U89 ARG A -3 UNP O33336 EXPRESSION TAG SEQADV 4U89 GLY A -2 UNP O33336 EXPRESSION TAG SEQADV 4U89 SER A -1 UNP O33336 EXPRESSION TAG SEQADV 4U89 HIS A 0 UNP O33336 EXPRESSION TAG SEQADV 4U89 GLY A 228 UNP O33336 EXPRESSION TAG SEQADV 4U89 SER A 229 UNP O33336 EXPRESSION TAG SEQADV 4U89 GLY A 230 UNP O33336 EXPRESSION TAG SEQADV 4U89 GLY A 231 UNP O33336 EXPRESSION TAG SEQADV 4U89 THR A 232 UNP O33336 EXPRESSION TAG SEQADV 4U89 SER A 233 UNP O33336 EXPRESSION TAG SEQADV 4U89 GLY A 234 UNP O33336 EXPRESSION TAG SEQADV 4U89 GLY A 235 UNP O33336 EXPRESSION TAG SEQADV 4U89 GLY A 236 UNP O33336 EXPRESSION TAG SEQADV 4U89 SER A 237 UNP O33336 EXPRESSION TAG SEQADV 4U89 GLY A 238 UNP O33336 EXPRESSION TAG SEQADV 4U89 THR A 239 UNP O33336 EXPRESSION TAG SEQRES 1 A 259 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 259 LEU VAL PRO ARG GLY SER HIS MET THR VAL GLY THR LEU SEQRES 3 A 259 VAL ALA SER VAL LEU PRO ALA THR VAL PHE GLU ASP LEU SEQRES 4 A 259 ALA TYR ALA GLU LEU TYR SER ASP PRO PRO GLY LEU THR SEQRES 5 A 259 PRO LEU PRO GLU GLU ALA PRO LEU ILE ALA ARG SER VAL SEQRES 6 A 259 ALA LYS ARG ARG ASN GLU PHE ILE THR VAL ARG HIS CYS SEQRES 7 A 259 ALA ARG ILE ALA LEU ASP GLN LEU GLY VAL PRO PRO ALA SEQRES 8 A 259 PRO ILE LEU LYS GLY ASP LYS GLY GLU PRO CYS TRP PRO SEQRES 9 A 259 ASP GLY MET VAL GLY SER LEU THR HIS CYS ALA GLY TYR SEQRES 10 A 259 ARG GLY ALA VAL VAL GLY ARG ARG ASP ALA VAL ARG SER SEQRES 11 A 259 VAL GLY ILE ASP ALA GLU PRO HIS ASP VAL LEU PRO ASN SEQRES 12 A 259 GLY VAL LEU ASP ALA ILE SER LEU PRO ALA GLU ARG ALA SEQRES 13 A 259 ASP MET PRO ARG THR MET PRO ALA ALA LEU HIS TRP ASP SEQRES 14 A 259 ARG ILE LEU PHE CYS ALA LYS GLU ALA THR TYR LYS ALA SEQRES 15 A 259 TRP PHE PRO LEU THR LYS ARG TRP LEU GLY PHE GLU ASP SEQRES 16 A 259 ALA HIS ILE THR PHE GLU THR ASP SER THR GLY TRP THR SEQRES 17 A 259 GLY ARG PHE VAL SER ARG ILE LEU ILE ASP GLY SER THR SEQRES 18 A 259 LEU SER GLY PRO PRO LEU THR THR LEU ARG GLY ARG TRP SEQRES 19 A 259 SER VAL GLU ARG GLY LEU VAL LEU THR ALA ILE VAL LEU SEQRES 20 A 259 GLY SER GLY GLY THR SER GLY GLY GLY SER GLY THR HET COA A 301 48 HET NA A 302 1 HET NA A 303 1 HET NA A 304 1 HET NA A 305 1 HET NA A 306 1 HET NA A 307 1 HET NA A 308 1 HET NA A 309 1 HET NA A 310 1 HET NA A 311 1 HET NA A 312 1 HET PO4 A 313 5 HET PG4 A 314 13 HET IMD A 315 5 HETNAM COA COENZYME A HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM IMD IMIDAZOLE FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 NA 11(NA 1+) FORMUL 14 PO4 O4 P 3- FORMUL 15 PG4 C8 H18 O5 FORMUL 16 IMD C3 H5 N2 1+ FORMUL 17 HOH *271(H2 O) HELIX 1 AA1 THR A 5 LEU A 11 5 7 HELIX 2 AA2 VAL A 15 GLU A 17 5 3 HELIX 3 AA3 GLU A 37 ALA A 42 5 6 HELIX 4 AA4 VAL A 45 LEU A 66 1 22 HELIX 5 AA5 GLY A 76 GLU A 80 5 5 HELIX 6 AA6 PRO A 122 SER A 130 1 9 HELIX 7 AA7 LEU A 131 MET A 142 1 12 HELIX 8 AA8 HIS A 147 LYS A 168 1 22 HELIX 9 AA9 GLY A 172 GLU A 174 5 3 SHEET 1 AA1 3 LEU A 19 LEU A 24 0 SHEET 2 AA1 3 TYR A 97 ARG A 104 -1 O VAL A 102 N ALA A 20 SHEET 3 AA1 3 MET A 87 CYS A 94 -1 N THR A 92 O GLY A 99 SHEET 1 AA2 5 SER A 110 PRO A 117 0 SHEET 2 AA2 5 LEU A 220 LEU A 227 -1 O VAL A 221 N GLU A 116 SHEET 3 AA2 5 THR A 209 GLU A 217 -1 N SER A 215 O LEU A 222 SHEET 4 AA2 5 THR A 188 ILE A 195 -1 N SER A 193 O LEU A 210 SHEET 5 AA2 5 ALA A 176 THR A 182 -1 N HIS A 177 O ARG A 194 LINK O GLU A 17 NA NA A 311 1555 1555 2.72 LINK O GLY A 89 NA NA A 308 1555 1555 3.16 LINK OD2 ASP A 137 NA NA A 302 1555 1555 2.65 LINK OG1 THR A 141 NA NA A 302 1555 1555 3.03 LINK O HIS A 177 NA NA A 303 1555 1555 2.84 LINK OG1ATHR A 179 NA NA A 303 1555 1555 2.75 LINK OG1BTHR A 179 NA NA A 303 1555 1555 3.07 LINK NA NA A 302 O HOH A 513 1555 1555 2.79 LINK NA NA A 303 O HOH A 431 1555 1555 2.78 LINK NA NA A 303 O HOH A 430 1555 1555 3.16 LINK NA NA A 304 O HOH A 616 1555 1555 2.83 LINK NA NA A 304 O HOH A 540 1555 1555 2.73 LINK NA NA A 305 O HOH A 543 1555 1555 2.86 LINK NA NA A 305 O HOH A 666 1555 1555 2.69 LINK NA NA A 305 O HOH A 650 1555 1555 2.84 LINK NA NA A 306 O HOH A 486 1555 1555 2.68 LINK NA NA A 306 O HOH A 487 1555 1555 2.83 LINK NA NA A 307 O HOH A 417 1555 1555 2.79 LINK NA NA A 307 O HOH A 571 1555 1555 2.73 LINK NA NA A 307 O HOH A 556 1555 1555 2.60 LINK NA NA A 308 O HOH A 507 1555 1555 2.53 LINK NA NA A 308 O HOH A 663 1555 1555 2.73 LINK NA NA A 308 O HOH A 500 1555 1555 2.79 LINK NA NA A 309 O3 PG4 A 314 1555 1555 3.20 LINK NA NA A 309 O4 PG4 A 314 1555 1555 3.15 LINK NA NA A 310 O HOH A 473 1555 1555 3.15 LINK NA NA A 311 O HOH A 435 1555 1555 2.74 LINK NA NA A 311 O HOH A 444 1555 1555 2.93 LINK NA NA A 312 O HOH A 519 1555 1555 2.59 LINK NA NA A 312 O HOH A 419 1555 1555 2.92 LINK NA NA A 312 O HOH A 539 1555 1555 2.57 LINK NA NA A 307 O HOH A 534 1555 3555 3.02 LINK NA NA A 310 O HOH A 403 1555 6545 2.74 LINK NA NA A 310 O HOH A 456 1555 6545 2.57 LINK NA NA A 310 O HOH A 484 1555 6545 2.53 SITE 1 AC1 34 ARG A 48 PHE A 52 ARG A 56 LYS A 75 SITE 2 AC1 34 LYS A 78 GLY A 79 GLU A 80 PRO A 81 SITE 3 AC1 34 LEU A 91 THR A 92 HIS A 93 ASP A 114 SITE 4 AC1 34 ASN A 123 GLY A 124 LYS A 156 GLU A 157 SITE 5 AC1 34 TYR A 160 LYS A 161 PHE A 164 TRP A 170 SITE 6 AC1 34 LEU A 171 GLY A 172 PHE A 173 HOH A 401 SITE 7 AC1 34 HOH A 438 HOH A 443 HOH A 467 HOH A 491 SITE 8 AC1 34 HOH A 493 HOH A 503 HOH A 509 HOH A 510 SITE 9 AC1 34 HOH A 515 HOH A 523 SITE 1 AC2 5 ASP A 137 THR A 141 THR A 179 PHE A 180 SITE 2 AC2 5 HOH A 513 SITE 1 AC3 4 HIS A 177 THR A 179 VAL A 192 HOH A 431 SITE 1 AC4 5 PRO A 72 LEU A 74 CYS A 82 HOH A 540 SITE 2 AC4 5 HOH A 616 SITE 1 AC5 4 TYR A 25 HOH A 543 HOH A 650 HOH A 666 SITE 1 AC6 4 CYS A 94 ALA A 95 HOH A 486 HOH A 487 SITE 1 AC7 4 HOH A 417 HOH A 534 HOH A 556 HOH A 571 SITE 1 AC8 6 TRP A 83 GLY A 89 PRO A 165 HOH A 500 SITE 2 AC8 6 HOH A 507 HOH A 663 SITE 1 AC9 2 PRO A 143 PG4 A 314 SITE 1 AD1 4 PRO A 35 HOH A 403 HOH A 456 HOH A 484 SITE 1 AD2 5 GLU A 17 PRO A 33 PRO A 35 HOH A 435 SITE 2 AD2 5 HOH A 444 SITE 1 AD3 3 HOH A 419 HOH A 519 HOH A 539 SITE 1 AD4 7 SER A 44 ARG A 48 HOH A 464 HOH A 512 SITE 2 AD4 7 HOH A 532 HOH A 561 HOH A 619 SITE 1 AD5 8 ALA A 42 ARG A 49 ARG A 140 MET A 142 SITE 2 AD5 8 ASP A 183 SER A 184 GLY A 186 NA A 309 SITE 1 AD6 1 TRP A 170 CRYST1 99.808 121.263 48.828 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010019 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020480 0.00000