HEADER SIGNALING PROTEIN 05-AUG-14 4U99 TITLE CRYSTAL STRUCTURE OF AN H-NOX PROTEIN FROM S. ONEIDENSIS IN THE FE(II) TITLE 2 LIGATION STATE, Q154A/Q155A/K156A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NO-BINDING HEME-DEPENDENT SENSOR PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: SO_2144; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: RP523(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET20 KEYWDS H-NOX, HEMOPROTEIN, GAS SENSOR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.HERZIK JR.,R.JONNALAGADDA,J.KURIYAN,M.A.MARLETTA REVDAT 4 27-SEP-23 4U99 1 SOURCE JRNL REMARK LINK REVDAT 3 15-OCT-14 4U99 1 JRNL REVDAT 2 08-OCT-14 4U99 1 JRNL SITE REVDAT 1 01-OCT-14 4U99 0 JRNL AUTH M.A.HERZIK,R.JONNALAGADDA,J.KURIYAN,M.A.MARLETTA JRNL TITL STRUCTURAL INSIGHTS INTO THE ROLE OF IRON-HISTIDINE BOND JRNL TITL 2 CLEAVAGE IN NITRIC OXIDE-INDUCED ACTIVATION OF H-NOX GAS JRNL TITL 3 SENSOR PROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 E4156 2014 JRNL REFN ESSN 1091-6490 JRNL PMID 25253889 JRNL DOI 10.1073/PNAS.1416936111 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 102223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 5169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8955 - 6.2103 0.94 3130 121 0.1428 0.1906 REMARK 3 2 6.2103 - 4.9309 0.97 3196 166 0.1404 0.1206 REMARK 3 3 4.9309 - 4.3081 0.98 3194 170 0.1202 0.1296 REMARK 3 4 4.3081 - 3.9144 0.98 3194 173 0.1264 0.1530 REMARK 3 5 3.9144 - 3.6339 0.98 3175 191 0.1429 0.1707 REMARK 3 6 3.6339 - 3.4197 0.98 3228 174 0.1511 0.1701 REMARK 3 7 3.4197 - 3.2485 0.99 3254 165 0.1682 0.1600 REMARK 3 8 3.2485 - 3.1071 0.99 3218 174 0.1787 0.2160 REMARK 3 9 3.1071 - 2.9875 0.99 3237 176 0.1823 0.2339 REMARK 3 10 2.9875 - 2.8845 1.00 3258 186 0.1853 0.1873 REMARK 3 11 2.8845 - 2.7943 1.00 3258 174 0.1972 0.2445 REMARK 3 12 2.7943 - 2.7144 1.00 3282 173 0.2094 0.2047 REMARK 3 13 2.7144 - 2.6430 1.00 3219 179 0.1988 0.2554 REMARK 3 14 2.6430 - 2.5785 1.00 3309 166 0.1992 0.2019 REMARK 3 15 2.5785 - 2.5199 1.00 3254 180 0.1937 0.2110 REMARK 3 16 2.5199 - 2.4662 1.00 3238 179 0.2050 0.2209 REMARK 3 17 2.4662 - 2.4169 1.00 3271 189 0.2032 0.2081 REMARK 3 18 2.4169 - 2.3713 1.00 3243 170 0.2020 0.2245 REMARK 3 19 2.3713 - 2.3290 1.00 3276 171 0.2092 0.2225 REMARK 3 20 2.3290 - 2.2895 1.00 3245 195 0.2161 0.2277 REMARK 3 21 2.2895 - 2.2525 1.00 3253 172 0.2378 0.2569 REMARK 3 22 2.2525 - 2.2179 1.00 3277 129 0.2410 0.2525 REMARK 3 23 2.2179 - 2.1853 1.00 3291 156 0.2501 0.2921 REMARK 3 24 2.1853 - 2.1545 1.00 3256 185 0.2450 0.2806 REMARK 3 25 2.1545 - 2.1254 1.00 3266 168 0.2628 0.2828 REMARK 3 26 2.1254 - 2.0978 1.00 3262 202 0.2732 0.2800 REMARK 3 27 2.0978 - 2.0716 0.99 3218 199 0.3047 0.2995 REMARK 3 28 2.0716 - 2.0466 0.99 3246 180 0.3197 0.3468 REMARK 3 29 2.0466 - 2.0228 0.98 3251 144 0.3311 0.3947 REMARK 3 30 2.0228 - 2.0000 0.94 3055 162 0.3795 0.3831 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3157 REMARK 3 ANGLE : 0.865 4290 REMARK 3 CHIRALITY : 0.027 460 REMARK 3 PLANARITY : 0.002 552 REMARK 3 DIHEDRAL : 14.174 1118 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 1:49 REMARK 3 ORIGIN FOR THE GROUP (A): -41.4413 -99.9314 92.6785 REMARK 3 T TENSOR REMARK 3 T11: 0.6625 T22: 0.5591 REMARK 3 T33: 0.6039 T12: 0.1199 REMARK 3 T13: -0.2537 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 3.7284 L22: 3.5010 REMARK 3 L33: 3.3037 L12: 0.1392 REMARK 3 L13: -1.5281 L23: 0.9756 REMARK 3 S TENSOR REMARK 3 S11: 0.1625 S12: 0.8057 S13: -0.3458 REMARK 3 S21: -0.7945 S22: -0.1631 S23: 0.4798 REMARK 3 S31: 0.2593 S32: -0.0294 S33: -0.0243 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 50:66 REMARK 3 ORIGIN FOR THE GROUP (A): -27.5020-102.5444 95.6217 REMARK 3 T TENSOR REMARK 3 T11: 0.6387 T22: 0.6331 REMARK 3 T33: 0.4665 T12: 0.2465 REMARK 3 T13: -0.0552 T23: 0.0746 REMARK 3 L TENSOR REMARK 3 L11: 5.4429 L22: 1.8294 REMARK 3 L33: 2.0357 L12: -0.2126 REMARK 3 L13: 2.5887 L23: -1.3050 REMARK 3 S TENSOR REMARK 3 S11: 0.2770 S12: 0.4316 S13: -0.6959 REMARK 3 S21: -0.4943 S22: -0.2519 S23: -0.1760 REMARK 3 S31: 0.8437 S32: 0.9590 S33: 0.1367 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 67:157 REMARK 3 ORIGIN FOR THE GROUP (A): -37.5698 -89.7204 111.1524 REMARK 3 T TENSOR REMARK 3 T11: 0.2543 T22: 0.3427 REMARK 3 T33: 0.4243 T12: 0.0364 REMARK 3 T13: -0.0631 T23: 0.1154 REMARK 3 L TENSOR REMARK 3 L11: 1.8295 L22: 3.3306 REMARK 3 L33: 3.5788 L12: -0.4865 REMARK 3 L13: 1.4148 L23: -0.7172 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.1119 S13: 0.1071 REMARK 3 S21: -0.1477 S22: -0.0104 S23: 0.3570 REMARK 3 S31: -0.0347 S32: -0.0654 S33: 0.0157 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 158:187 REMARK 3 ORIGIN FOR THE GROUP (A): -25.7995 -90.3785 116.4357 REMARK 3 T TENSOR REMARK 3 T11: 0.2950 T22: 0.5148 REMARK 3 T33: 0.4425 T12: 0.0484 REMARK 3 T13: -0.0736 T23: 0.1004 REMARK 3 L TENSOR REMARK 3 L11: 1.5544 L22: 9.7722 REMARK 3 L33: 1.1823 L12: 3.3022 REMARK 3 L13: -0.1483 L23: 1.4899 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: 0.0705 S13: 0.0241 REMARK 3 S21: -0.0017 S22: 0.2682 S23: -0.0178 REMARK 3 S31: 0.1092 S32: 0.3563 S33: -0.2001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 201 REMARK 3 ORIGIN FOR THE GROUP (A): -40.6373 -93.7793 108.2674 REMARK 3 T TENSOR REMARK 3 T11: 0.3296 T22: 0.4022 REMARK 3 T33: 0.4643 T12: 0.0330 REMARK 3 T13: -0.0892 T23: 0.0975 REMARK 3 L TENSOR REMARK 3 L11: 7.5214 L22: 5.4140 REMARK 3 L33: 5.6433 L12: 6.0009 REMARK 3 L13: 3.3079 L23: 4.2543 REMARK 3 S TENSOR REMARK 3 S11: 0.2091 S12: -0.0871 S13: 0.0245 REMARK 3 S21: 0.2706 S22: -0.2966 S23: 0.2234 REMARK 3 S31: 0.1980 S32: -0.1587 S33: -0.0394 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESID 1:79 REMARK 3 ORIGIN FOR THE GROUP (A): -21.5765-122.1883 116.5159 REMARK 3 T TENSOR REMARK 3 T11: 0.3663 T22: 0.3180 REMARK 3 T33: 0.4173 T12: 0.0849 REMARK 3 T13: -0.1106 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 3.5559 L22: 4.3338 REMARK 3 L33: 5.4360 L12: -0.6238 REMARK 3 L13: 1.0383 L23: -1.4558 REMARK 3 S TENSOR REMARK 3 S11: 0.3006 S12: 0.3920 S13: -0.2970 REMARK 3 S21: -0.3902 S22: -0.2832 S23: 0.3424 REMARK 3 S31: 0.3634 S32: -0.0679 S33: -0.0433 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESID 80:110 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8312-119.7936 94.6829 REMARK 3 T TENSOR REMARK 3 T11: 1.1658 T22: 0.9116 REMARK 3 T33: 0.5456 T12: 0.4501 REMARK 3 T13: 0.0113 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 7.9328 L22: 4.9265 REMARK 3 L33: 4.6523 L12: 4.0564 REMARK 3 L13: -0.6039 L23: 0.1089 REMARK 3 S TENSOR REMARK 3 S11: 0.2355 S12: 1.4495 S13: -0.6700 REMARK 3 S21: -1.4539 S22: -0.3705 S23: -0.5465 REMARK 3 S31: 1.2306 S32: 0.4456 S33: 0.1789 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESID 111:175 REMARK 3 ORIGIN FOR THE GROUP (A): -11.4501-109.0751 103.8993 REMARK 3 T TENSOR REMARK 3 T11: 0.5359 T22: 0.8421 REMARK 3 T33: 0.5229 T12: 0.2669 REMARK 3 T13: 0.0403 T23: 0.1963 REMARK 3 L TENSOR REMARK 3 L11: 3.5009 L22: 4.3631 REMARK 3 L33: 2.4321 L12: -1.1529 REMARK 3 L13: -0.1548 L23: 0.0855 REMARK 3 S TENSOR REMARK 3 S11: 0.2487 S12: 0.6618 S13: 0.1662 REMARK 3 S21: -0.6320 S22: -0.4606 S23: -0.8090 REMARK 3 S31: 0.3462 S32: 0.9849 S33: 0.2069 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND RESID 176:186 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0227-117.1804 97.3988 REMARK 3 T TENSOR REMARK 3 T11: 0.8457 T22: 1.1718 REMARK 3 T33: 0.8261 T12: 0.1324 REMARK 3 T13: -0.0642 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 4.7781 L22: 4.2026 REMARK 3 L33: 3.2719 L12: -1.7457 REMARK 3 L13: -0.2025 L23: 1.6454 REMARK 3 S TENSOR REMARK 3 S11: -0.0842 S12: -0.3263 S13: -0.9526 REMARK 3 S21: -0.0936 S22: 1.2677 S23: 0.0367 REMARK 3 S31: 0.0919 S32: -0.6218 S33: -1.2396 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND RESID 201 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8424-116.7691 102.8710 REMARK 3 T TENSOR REMARK 3 T11: 0.6338 T22: 0.6360 REMARK 3 T33: 0.4252 T12: 0.2649 REMARK 3 T13: -0.0458 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 5.2819 L22: 4.9574 REMARK 3 L33: 4.0035 L12: -1.8019 REMARK 3 L13: -1.3512 L23: 1.8512 REMARK 3 S TENSOR REMARK 3 S11: 0.4395 S12: 0.7012 S13: -0.1689 REMARK 3 S21: -1.1123 S22: -0.2420 S23: 0.3507 REMARK 3 S31: 0.2782 S32: 0.2391 S33: -0.2063 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102223 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.882 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.02100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.2080 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3TF8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: OBTAINED BY EQUILIBRATING A 2 UL DROP REMARK 280 OF 1:1 PROTEIN:RESERVOIR AGAINST A 700 UL RESERVOIR CONTAINING REMARK 280 1.6-1.9 M DL-MALIC ACID (PH 7.3). FOR CRYOPROTECTION, 2 UL OF REMARK 280 MOTHER LIQUOR CONTAINING 10% GLYCEROL WAS ADDED DIRECTLY TO THE REMARK 280 DROP AND CRYSTALS WERE SERIAL TRANSFERRED INTO MOTHER LIQUOR REMARK 280 SOLUTION CONTAINING 5, 7.5 AND 10% GLYCEROL PRIOR TO FLASH REMARK 280 FREEZING IN LIQUID NITROGEN. CRYSTAL GROWTH AND MANIPULATION WAS REMARK 280 PERFORMED ANAEROBICALLY., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.85900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.85900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.85900 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.85900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 50.85900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 50.85900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 313 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 181 CG OD1 OD2 REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 151 O HOH A 302 1.59 REMARK 500 O HOH A 381 O HOH A 382 2.13 REMARK 500 OE2 GLU B 24 O HOH B 301 2.14 REMARK 500 O HOH A 357 O HOH B 365 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 134 140.24 -171.35 REMARK 500 TYR A 185 -94.79 -105.32 REMARK 500 VAL B 101 -61.33 -121.54 REMARK 500 ASN B 125 -166.80 60.62 REMARK 500 GLN B 179 -71.41 -139.94 REMARK 500 TYR B 185 -70.06 -94.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 103 NE2 REMARK 620 2 HEM A 201 NA 92.6 REMARK 620 3 HEM A 201 NB 97.4 91.7 REMARK 620 4 HEM A 201 NC 100.1 167.3 86.9 REMARK 620 5 HEM A 201 ND 97.7 87.9 164.9 90.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 139 SG REMARK 620 2 HIS A 161 NE2 110.4 REMARK 620 3 CYS A 164 SG 109.3 106.6 REMARK 620 4 CYS A 172 SG 104.7 114.2 111.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 180 OD1 REMARK 620 2 ASP A 181 O 87.5 REMARK 620 3 LEU A 184 O 81.5 88.3 REMARK 620 4 HOH A 324 O 96.5 85.6 173.7 REMARK 620 5 HOH A 333 O 85.1 164.0 104.6 81.1 REMARK 620 6 HOH A 354 O 167.7 100.1 89.0 93.7 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 103 NE2 REMARK 620 2 HEM B 201 NA 94.7 REMARK 620 3 HEM B 201 NB 96.8 89.4 REMARK 620 4 HEM B 201 NC 97.1 168.2 88.1 REMARK 620 5 HEM B 201 ND 97.9 88.5 165.2 91.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 139 SG REMARK 620 2 HIS B 161 NE2 110.0 REMARK 620 3 CYS B 164 SG 112.9 104.6 REMARK 620 4 CYS B 172 SG 103.8 111.5 114.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4U9B RELATED DB: PDB REMARK 900 RELATED ID: 4U9G RELATED DB: PDB REMARK 900 RELATED ID: 4U9J RELATED DB: PDB REMARK 900 RELATED ID: 4U9K RELATED DB: PDB REMARK 900 RELATED ID: 2KII RELATED DB: PDB REMARK 900 RELATED ID: 2KIL RELATED DB: PDB DBREF 4U99 A 1 181 UNP Q8EF49 Q8EF49_SHEON 1 181 DBREF 4U99 B 1 181 UNP Q8EF49 Q8EF49_SHEON 1 181 SEQADV 4U99 ALA A 154 UNP Q8EF49 GLN 154 ENGINEERED MUTATION SEQADV 4U99 ALA A 155 UNP Q8EF49 GLN 155 ENGINEERED MUTATION SEQADV 4U99 ALA A 156 UNP Q8EF49 LYS 156 ENGINEERED MUTATION SEQADV 4U99 GLU A 182 UNP Q8EF49 EXPRESSION TAG SEQADV 4U99 ASN A 183 UNP Q8EF49 EXPRESSION TAG SEQADV 4U99 LEU A 184 UNP Q8EF49 EXPRESSION TAG SEQADV 4U99 TYR A 185 UNP Q8EF49 EXPRESSION TAG SEQADV 4U99 PHE A 186 UNP Q8EF49 EXPRESSION TAG SEQADV 4U99 GLN A 187 UNP Q8EF49 EXPRESSION TAG SEQADV 4U99 ALA B 154 UNP Q8EF49 GLN 154 ENGINEERED MUTATION SEQADV 4U99 ALA B 155 UNP Q8EF49 GLN 155 ENGINEERED MUTATION SEQADV 4U99 ALA B 156 UNP Q8EF49 LYS 156 ENGINEERED MUTATION SEQADV 4U99 GLU B 182 UNP Q8EF49 EXPRESSION TAG SEQADV 4U99 ASN B 183 UNP Q8EF49 EXPRESSION TAG SEQADV 4U99 LEU B 184 UNP Q8EF49 EXPRESSION TAG SEQADV 4U99 TYR B 185 UNP Q8EF49 EXPRESSION TAG SEQADV 4U99 PHE B 186 UNP Q8EF49 EXPRESSION TAG SEQADV 4U99 GLN B 187 UNP Q8EF49 EXPRESSION TAG SEQRES 1 A 187 MET LYS GLY ILE ILE PHE ASN VAL LEU GLU ASP MET VAL SEQRES 2 A 187 VAL ALA GLN CYS GLY MET SER VAL TRP ASN GLU LEU LEU SEQRES 3 A 187 GLU LYS HIS ALA PRO LYS ASP ARG VAL TYR VAL SER ALA SEQRES 4 A 187 LYS SER TYR ALA GLU SER GLU LEU PHE SER ILE VAL GLN SEQRES 5 A 187 ASP VAL ALA GLN ARG LEU ASN MET PRO ILE GLN ASP VAL SEQRES 6 A 187 VAL LYS ALA PHE GLY GLN PHE LEU PHE ASN GLY LEU ALA SEQRES 7 A 187 SER ARG HIS THR ASP VAL VAL ASP LYS PHE ASP ASP PHE SEQRES 8 A 187 THR SER LEU VAL MET GLY ILE HIS ASP VAL ILE HIS LEU SEQRES 9 A 187 GLU VAL ASN LYS LEU TYR HIS GLU PRO SER LEU PRO HIS SEQRES 10 A 187 ILE ASN GLY GLN LEU LEU PRO ASN ASN GLN ILE ALA LEU SEQRES 11 A 187 ARG TYR SER SER PRO ARG ARG LEU CYS PHE CYS ALA GLU SEQRES 12 A 187 GLY LEU LEU PHE GLY ALA ALA GLN HIS PHE ALA ALA ALA SEQRES 13 A 187 ILE GLN ILE SER HIS ASP THR CYS MET HIS THR GLY ALA SEQRES 14 A 187 ASP HIS CYS MET LEU ILE ILE GLU LEU GLN ASN ASP GLU SEQRES 15 A 187 ASN LEU TYR PHE GLN SEQRES 1 B 187 MET LYS GLY ILE ILE PHE ASN VAL LEU GLU ASP MET VAL SEQRES 2 B 187 VAL ALA GLN CYS GLY MET SER VAL TRP ASN GLU LEU LEU SEQRES 3 B 187 GLU LYS HIS ALA PRO LYS ASP ARG VAL TYR VAL SER ALA SEQRES 4 B 187 LYS SER TYR ALA GLU SER GLU LEU PHE SER ILE VAL GLN SEQRES 5 B 187 ASP VAL ALA GLN ARG LEU ASN MET PRO ILE GLN ASP VAL SEQRES 6 B 187 VAL LYS ALA PHE GLY GLN PHE LEU PHE ASN GLY LEU ALA SEQRES 7 B 187 SER ARG HIS THR ASP VAL VAL ASP LYS PHE ASP ASP PHE SEQRES 8 B 187 THR SER LEU VAL MET GLY ILE HIS ASP VAL ILE HIS LEU SEQRES 9 B 187 GLU VAL ASN LYS LEU TYR HIS GLU PRO SER LEU PRO HIS SEQRES 10 B 187 ILE ASN GLY GLN LEU LEU PRO ASN ASN GLN ILE ALA LEU SEQRES 11 B 187 ARG TYR SER SER PRO ARG ARG LEU CYS PHE CYS ALA GLU SEQRES 12 B 187 GLY LEU LEU PHE GLY ALA ALA GLN HIS PHE ALA ALA ALA SEQRES 13 B 187 ILE GLN ILE SER HIS ASP THR CYS MET HIS THR GLY ALA SEQRES 14 B 187 ASP HIS CYS MET LEU ILE ILE GLU LEU GLN ASN ASP GLU SEQRES 15 B 187 ASN LEU TYR PHE GLN HET HEM A 201 73 HET ZN A 202 1 HET NA A 203 1 HET HEM B 201 73 HET ZN B 202 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 NA NA 1+ FORMUL 8 HOH *212(H2 O) HELIX 1 AA1 LYS A 2 CYS A 17 1 16 HELIX 2 AA2 GLY A 18 ALA A 30 1 13 HELIX 3 AA3 ALA A 43 ASN A 59 1 17 HELIX 4 AA4 PRO A 61 HIS A 81 1 21 HELIX 5 AA5 HIS A 81 ASP A 86 1 6 HELIX 6 AA6 ASP A 90 GLY A 97 1 8 HELIX 7 AA7 VAL A 101 TYR A 110 1 10 HELIX 8 AA8 LEU A 138 PHE A 153 1 16 HELIX 9 AA9 CYS A 164 GLY A 168 5 5 HELIX 10 AB1 LYS B 2 GLY B 18 1 17 HELIX 11 AB2 GLY B 18 ALA B 30 1 13 HELIX 12 AB3 ALA B 43 LEU B 58 1 16 HELIX 13 AB4 PRO B 61 HIS B 81 1 21 HELIX 14 AB5 HIS B 81 ASP B 86 1 6 HELIX 15 AB6 ASP B 90 GLY B 97 1 8 HELIX 16 AB7 VAL B 101 TYR B 110 1 10 HELIX 17 AB8 LEU B 138 PHE B 153 1 16 HELIX 18 AB9 CYS B 164 GLY B 168 5 5 SHEET 1 AA1 4 HIS A 117 LEU A 123 0 SHEET 2 AA1 4 GLN A 127 SER A 133 -1 O SER A 133 N HIS A 117 SHEET 3 AA1 4 CYS A 172 ASN A 180 -1 O ILE A 176 N ILE A 128 SHEET 4 AA1 4 ALA A 156 THR A 163 -1 N GLN A 158 O GLU A 177 SHEET 1 AA2 4 HIS B 117 LEU B 123 0 SHEET 2 AA2 4 GLN B 127 SER B 133 -1 O ARG B 131 N ASN B 119 SHEET 3 AA2 4 CYS B 172 ASN B 180 -1 O ILE B 176 N ILE B 128 SHEET 4 AA2 4 ALA B 156 THR B 163 -1 N GLN B 158 O GLU B 177 LINK NE2 HIS A 103 FE HEM A 201 1555 1555 2.21 LINK SG CYS A 139 ZN ZN A 202 1555 1555 2.32 LINK NE2 HIS A 161 ZN ZN A 202 1555 1555 2.05 LINK SG CYS A 164 ZN ZN A 202 1555 1555 2.36 LINK SG CYS A 172 ZN ZN A 202 1555 1555 2.30 LINK OD1 ASN A 180 NA NA A 203 1555 1555 2.41 LINK O ASP A 181 NA NA A 203 1555 1555 2.44 LINK O LEU A 184 NA NA A 203 1555 1555 2.25 LINK NA NA A 203 O HOH A 324 1555 1555 2.29 LINK NA NA A 203 O HOH A 333 1555 1555 2.49 LINK NA NA A 203 O HOH A 354 1555 1555 2.22 LINK NE2 HIS B 103 FE HEM B 201 1555 1555 2.20 LINK SG CYS B 139 ZN ZN B 202 1555 1555 2.34 LINK NE2 HIS B 161 ZN ZN B 202 1555 1555 2.06 LINK SG CYS B 164 ZN ZN B 202 1555 1555 2.29 LINK SG CYS B 172 ZN ZN B 202 1555 1555 2.23 SITE 1 AC1 18 MET A 1 LYS A 2 LEU A 77 HIS A 81 SITE 2 AC1 18 VAL A 84 ILE A 102 HIS A 103 VAL A 106 SITE 3 AC1 18 PRO A 113 SER A 114 LEU A 115 PRO A 116 SITE 4 AC1 18 TYR A 132 SER A 134 ARG A 136 LEU A 145 SITE 5 AC1 18 LEU A 146 HOH A 347 SITE 1 AC2 4 CYS A 139 HIS A 161 CYS A 164 CYS A 172 SITE 1 AC3 6 ASN A 180 ASP A 181 LEU A 184 HOH A 324 SITE 2 AC3 6 HOH A 333 HOH A 354 SITE 1 AC4 19 MET B 1 LYS B 2 LEU B 77 HIS B 81 SITE 2 AC4 19 ILE B 98 ILE B 102 HIS B 103 VAL B 106 SITE 3 AC4 19 PRO B 113 SER B 114 LEU B 115 PRO B 116 SITE 4 AC4 19 TYR B 132 SER B 134 ARG B 136 LEU B 138 SITE 5 AC4 19 LEU B 145 HOH B 327 HOH B 333 SITE 1 AC5 4 CYS B 139 HIS B 161 CYS B 164 CYS B 172 CRYST1 164.003 164.003 101.718 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006097 0.003520 0.000000 0.00000 SCALE2 0.000000 0.007041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009831 0.00000