HEADER LIGASE 09-MAR-99 4UAG TITLE UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MURD; COMPND 5 EC: 6.3.2.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: JM83 (PMLD58); SOURCE 5 GENE: MURD GENE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM83 (PMLD58) KEYWDS LIGASE, PEPTIDOGLYCAN SYNTHESIS, MURD, ADP-FORMING ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR J.BERTRAND,G.AUGER,L.MARTIN,E.FANCHON,D.BLANOT,D.LE BELLER,J.VAN AUTHOR 2 HEIJENOORT,O.DIDEBERG REVDAT 5 27-DEC-23 4UAG 1 REMARK LINK REVDAT 4 06-NOV-19 4UAG 1 JRNL LINK REVDAT 3 24-FEB-09 4UAG 1 VERSN REVDAT 2 01-APR-03 4UAG 1 JRNL REVDAT 1 15-MAR-00 4UAG 0 JRNL AUTH J.A.BERTRAND,G.AUGER,L.MARTIN,E.FANCHON,D.BLANOT, JRNL AUTH 2 D.LE BELLER,J.VAN HEIJENOORT,O.DIDEBERG JRNL TITL DETERMINATION OF THE MURD MECHANISM THROUGH CRYSTALLOGRAPHIC JRNL TITL 2 ANALYSIS OF ENZYME COMPLEXES. JRNL REF J.MOL.BIOL. V. 289 579 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10356330 JRNL DOI 10.1006/JMBI.1999.2800 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.AUGER,L.MARTIN,J.BERTRAND,P.FERRARI,E.FANCHON,S.VAGANAY, REMARK 1 AUTH 2 Y.PETILLOT,J.VAN HEIJENOORT,D.BLANOT,O.DIDEBERG REMARK 1 TITL LARGE-SCALE PREPARATION, PURIFICATION, AND CRYSTALLIZATION REMARK 1 TITL 2 OF UDP-N-ACETYLMURAMOYL-L-ALANINE: D-GLUTAMATE LIGASE FROM REMARK 1 TITL 3 ESCHERICHIA COLI. REMARK 1 REF PROTEIN EXPR.PURIF. V. 13 23 1998 REMARK 1 REFN ISSN 1046-5928 REMARK 1 PMID 9631510 REMARK 1 DOI 10.1006/PREP.1997.0850 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.A.BERTRAND,G.AUGER,E.FANCHON,L.MARTIN,D.BLANOT, REMARK 1 AUTH 2 J.VAN HEIJENOORT,O.DIDEBERG REMARK 1 TITL CRYSTAL STRUCTURE OF REMARK 1 TITL 2 UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE FROM REMARK 1 TITL 3 ESCHERICHIA COLI. REMARK 1 REF EMBO J. V. 16 3416 1997 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 9218784 REMARK 1 DOI 10.1093/EMBOJ/16.12.3416 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 0.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 65250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3269 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.35 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6840 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.03 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 363 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3230 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.190 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UAG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-99. REMARK 100 THE DEPOSITION ID IS D_1000000610. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUN-97 REMARK 200 TEMPERATURE (KELVIN) : 100.00 REMARK 200 PH : 7.20 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BL19 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66314 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 65.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 32.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.14900 REMARK 200 FOR SHELL : 10.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.20 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.26800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.63400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.90200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 RESIDUE 198 IS A MODIFIED LYSINE WHICH IS CARBAMYLATED AT REMARK 400 THE ZETA-AMINO GROUP. THE CARBAMYLATED RESIDUE IS PRESENTED REMARK 400 AS HET GROUP KCX. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 221 REMARK 465 GLY A 222 REMARK 465 ALA A 223 REMARK 465 ASP A 224 REMARK 465 GLU A 225 REMARK 465 GLN A 242 REMARK 465 GLN A 243 REMARK 465 GLY A 244 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 UNK UNX A 991 UNK UNX A 993 1.46 REMARK 500 UNK UNX A 988 UNK UNX A 989 1.66 REMARK 500 UNK UNX A 987 UNK UNX A 990 1.68 REMARK 500 UNK UNX A 986 UNK UNX A 990 1.71 REMARK 500 UNK UNX A 989 UNK UNX A 991 1.96 REMARK 500 UNK UNX A 991 UNK UNX A 992 2.03 REMARK 500 UNK UNX A 992 UNK UNX A 993 2.07 REMARK 500 UNK UNX A 989 UNK UNX A 990 2.13 REMARK 500 UNK UNX A 989 UNK UNX A 993 2.18 REMARK 500 UNK UNX A 988 O HOH A 942 2.18 REMARK 500 UNK UNX A 987 UNK UNX A 989 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 303 51.99 39.38 REMARK 500 ARG A 380 84.90 -154.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 219 ILE A 220 -143.19 REMARK 500 SER A 410 PRO A 411 -148.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 461 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UAG A 460 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 986 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 987 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 988 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 989 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 990 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 991 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 992 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 993 DBREF 4UAG A 1 437 UNP P14900 MURD_ECOLI 2 438 SEQADV 4UAG KCX A 198 UNP P14900 LYS 198 SEE REMARK 999 SEQRES 1 A 437 ALA ASP TYR GLN GLY LYS ASN VAL VAL ILE ILE GLY LEU SEQRES 2 A 437 GLY LEU THR GLY LEU SER CYS VAL ASP PHE PHE LEU ALA SEQRES 3 A 437 ARG GLY VAL THR PRO ARG VAL MET ASP THR ARG MET THR SEQRES 4 A 437 PRO PRO GLY LEU ASP LYS LEU PRO GLU ALA VAL GLU ARG SEQRES 5 A 437 HIS THR GLY SER LEU ASN ASP GLU TRP LEU MET ALA ALA SEQRES 6 A 437 ASP LEU ILE VAL ALA SER PRO GLY ILE ALA LEU ALA HIS SEQRES 7 A 437 PRO SER LEU SER ALA ALA ALA ASP ALA GLY ILE GLU ILE SEQRES 8 A 437 VAL GLY ASP ILE GLU LEU PHE CYS ARG GLU ALA GLN ALA SEQRES 9 A 437 PRO ILE VAL ALA ILE THR GLY SER ASN GLY LYS SER THR SEQRES 10 A 437 VAL THR THR LEU VAL GLY GLU MET ALA LYS ALA ALA GLY SEQRES 11 A 437 VAL ASN VAL GLY VAL GLY GLY ASN ILE GLY LEU PRO ALA SEQRES 12 A 437 LEU MET LEU LEU ASP ASP GLU CYS GLU LEU TYR VAL LEU SEQRES 13 A 437 GLU LEU SER SER PHE GLN LEU GLU THR THR SER SER LEU SEQRES 14 A 437 GLN ALA VAL ALA ALA THR ILE LEU ASN VAL THR GLU ASP SEQRES 15 A 437 HIS MET ASP ARG TYR PRO PHE GLY LEU GLN GLN TYR ARG SEQRES 16 A 437 ALA ALA KCX LEU ARG ILE TYR GLU ASN ALA LYS VAL CYS SEQRES 17 A 437 VAL VAL ASN ALA ASP ASP ALA LEU THR MET PRO ILE ARG SEQRES 18 A 437 GLY ALA ASP GLU ARG CYS VAL SER PHE GLY VAL ASN MET SEQRES 19 A 437 GLY ASP TYR HIS LEU ASN HIS GLN GLN GLY GLU THR TRP SEQRES 20 A 437 LEU ARG VAL LYS GLY GLU LYS VAL LEU ASN VAL LYS GLU SEQRES 21 A 437 MET LYS LEU SER GLY GLN HIS ASN TYR THR ASN ALA LEU SEQRES 22 A 437 ALA ALA LEU ALA LEU ALA ASP ALA ALA GLY LEU PRO ARG SEQRES 23 A 437 ALA SER SER LEU LYS ALA LEU THR THR PHE THR GLY LEU SEQRES 24 A 437 PRO HIS ARG PHE GLU VAL VAL LEU GLU HIS ASN GLY VAL SEQRES 25 A 437 ARG TRP ILE ASN ASP SER LYS ALA THR ASN VAL GLY SER SEQRES 26 A 437 THR GLU ALA ALA LEU ASN GLY LEU HIS VAL ASP GLY THR SEQRES 27 A 437 LEU HIS LEU LEU LEU GLY GLY ASP GLY LYS SER ALA ASP SEQRES 28 A 437 PHE SER PRO LEU ALA ARG TYR LEU ASN GLY ASP ASN VAL SEQRES 29 A 437 ARG LEU TYR CYS PHE GLY ARG ASP GLY ALA GLN LEU ALA SEQRES 30 A 437 ALA LEU ARG PRO GLU VAL ALA GLU GLN THR GLU THR MET SEQRES 31 A 437 GLU GLN ALA MET ARG LEU LEU ALA PRO ARG VAL GLN PRO SEQRES 32 A 437 GLY ASP MET VAL LEU LEU SER PRO ALA CYS ALA SER LEU SEQRES 33 A 437 ASP GLN PHE LYS ASN PHE GLU GLN ARG GLY ASN GLU PHE SEQRES 34 A 437 ALA ARG LEU ALA LYS GLU LEU GLY MODRES 4UAG KCX A 198 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 198 12 HET SO4 A 461 5 HET UAG A 460 58 HET UNX A 986 1 HET UNX A 987 1 HET UNX A 988 1 HET UNX A 989 1 HET UNX A 990 1 HET UNX A 991 1 HET UNX A 992 1 HET UNX A 993 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM UAG URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D- HETNAM 2 UAG GLUTAMATE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 SO4 O4 S 2- FORMUL 3 UAG C28 H43 N5 O23 P2 FORMUL 4 UNX 8(X) FORMUL 12 HOH *322(H2 O) HELIX 1 1 GLY A 14 ALA A 26 1 13 HELIX 2 2 PRO A 40 LEU A 46 5 7 HELIX 3 3 ASN A 58 ALA A 65 1 8 HELIX 4 4 HIS A 78 ALA A 87 1 10 HELIX 5 5 GLY A 93 ARG A 100 1 8 HELIX 6 6 GLY A 114 ALA A 129 1 16 HELIX 7 7 PRO A 142 LEU A 147 5 6 HELIX 8 8 SER A 159 THR A 165 1 7 HELIX 9 9 HIS A 183 TYR A 187 5 5 HELIX 10 10 PHE A 189 ALA A 197 1 9 HELIX 11 11 LEU A 199 GLU A 203 5 5 HELIX 12 12 ASP A 214 MET A 218 5 5 HELIX 13 13 LYS A 259 MET A 261 5 3 HELIX 14 14 GLY A 265 ALA A 282 1 18 HELIX 15 15 PRO A 285 PHE A 296 1 12 HELIX 16 16 ASN A 322 ASN A 331 1 10 HELIX 17 17 PHE A 352 LEU A 359 5 8 HELIX 18 18 ASP A 372 ALA A 378 1 7 HELIX 19 19 LEU A 379 GLU A 382 5 4 HELIX 20 20 THR A 389 ALA A 398 1 10 HELIX 21 21 PRO A 399 VAL A 401 5 3 HELIX 22 22 ASN A 421 GLY A 437 1 17 SHEET 1 A 5 ARG A 52 THR A 54 0 SHEET 2 A 5 ARG A 32 ASP A 35 1 O VAL A 33 N HIS A 53 SHEET 3 A 5 VAL A 8 ILE A 11 1 O VAL A 8 N ARG A 32 SHEET 4 A 5 LEU A 67 ALA A 70 1 O LEU A 67 N VAL A 9 SHEET 5 A 5 GLU A 90 VAL A 92 1 O GLU A 90 N ILE A 68 SHEET 1 B 6 VAL A 133 GLY A 137 0 SHEET 2 B 6 LEU A 153 GLU A 157 1 O LEU A 153 N GLY A 134 SHEET 3 B 6 ILE A 106 THR A 110 1 O VAL A 107 N LEU A 156 SHEET 4 B 6 ALA A 173 ILE A 176 1 O ALA A 173 N ALA A 108 SHEET 5 B 6 VAL A 207 ASN A 211 1 O VAL A 207 N ALA A 174 SHEET 6 B 6 VAL A 228 PHE A 230 1 O VAL A 228 N VAL A 210 SHEET 1 C 3 TYR A 237 ASN A 240 0 SHEET 2 C 3 TRP A 247 VAL A 250 -1 N TRP A 247 O ASN A 240 SHEET 3 C 3 GLU A 253 ASN A 257 -1 O GLU A 253 N VAL A 250 SHEET 1 D 6 GLU A 304 HIS A 309 0 SHEET 2 D 6 VAL A 312 ASN A 316 -1 O VAL A 312 N HIS A 309 SHEET 3 D 6 MET A 406 LEU A 409 1 O VAL A 407 N ILE A 315 SHEET 4 D 6 LEU A 339 GLY A 344 1 N HIS A 340 O MET A 406 SHEET 5 D 6 VAL A 364 PHE A 369 1 N ARG A 365 O LEU A 339 SHEET 6 D 6 ALA A 384 GLN A 386 1 O GLU A 385 N CYS A 368 SSBOND 1 CYS A 208 CYS A 227 1555 1555 2.06 LINK C ALA A 197 N KCX A 198 1555 1555 1.33 LINK C KCX A 198 N LEU A 199 1555 1555 1.33 SITE 1 AC1 9 ASN A 113 GLY A 114 LYS A 115 SER A 116 SITE 2 AC1 9 THR A 117 ARG A 302 LYS A 319 HOH A 643 SITE 3 AC1 9 HOH A 646 SITE 1 AC2 39 GLY A 14 LEU A 15 THR A 16 ASP A 35 SITE 2 AC2 39 THR A 36 ARG A 37 SER A 71 PRO A 72 SITE 3 AC2 39 GLY A 73 GLY A 137 ASN A 138 GLY A 140 SITE 4 AC2 39 SER A 159 PHE A 161 GLN A 162 HIS A 183 SITE 5 AC2 39 THR A 321 LYS A 348 ALA A 414 SER A 415 SITE 6 AC2 39 ASN A 421 PHE A 422 HOH A 501 HOH A 502 SITE 7 AC2 39 HOH A 529 HOH A 554 HOH A 565 HOH A 594 SITE 8 AC2 39 HOH A 600 HOH A 684 HOH A 906 HOH A 912 SITE 9 AC2 39 HOH A 956 HOH A 958 UNX A 986 UNX A 990 SITE 10 AC2 39 UNX A 991 UNX A 992 UNX A 993 SITE 1 AC3 7 ASN A 138 ILE A 139 UAG A 460 HOH A 624 SITE 2 AC3 7 HOH A 904 UNX A 987 UNX A 990 SITE 1 AC4 8 SER A 116 ASN A 138 GLU A 157 LYS A 319 SITE 2 AC4 8 UNX A 986 UNX A 988 UNX A 989 UNX A 990 SITE 1 AC5 8 LYS A 319 HOH A 942 UNX A 987 UNX A 989 SITE 2 AC5 8 UNX A 990 UNX A 991 UNX A 992 UNX A 993 SITE 1 AC6 7 ASN A 138 UNX A 987 UNX A 988 UNX A 990 SITE 2 AC6 7 UNX A 991 UNX A 992 UNX A 993 SITE 1 AC7 8 ASN A 138 UAG A 460 UNX A 986 UNX A 987 SITE 2 AC7 8 UNX A 988 UNX A 989 UNX A 991 UNX A 992 SITE 1 AC8 7 PHE A 422 UAG A 460 UNX A 988 UNX A 989 SITE 2 AC8 7 UNX A 990 UNX A 992 UNX A 993 SITE 1 AC9 8 ASN A 138 UAG A 460 HOH A 920 UNX A 988 SITE 2 AC9 8 UNX A 989 UNX A 990 UNX A 991 UNX A 993 SITE 1 BC1 8 THR A 321 UAG A 460 HOH A 920 HOH A 942 SITE 2 BC1 8 UNX A 988 UNX A 989 UNX A 991 UNX A 992 CRYST1 65.809 65.809 134.536 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015195 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007433 0.00000