HEADER OXIDOREDUCTASE 10-AUG-14 4UAJ TITLE CRYSTAL STRUCTURE OF NQRF IN HEXAGONAL SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT F; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 129-408; COMPND 5 SYNONYM: NA(+)-TRANSLOCATING NQR SUBUNIT F,NQR COMPLEX SUBUNIT F,NQR- COMPND 6 1 SUBUNIT F; COMPND 7 EC: 1.6.5.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: ATCC 39541 / CLASSICAL OGAWA 395 / O395; SOURCE 5 GENE: NQRF, VC0395_A1879, VC395_2406; SOURCE 6 EXPRESSION_SYSTEM: VIBRIO CHOLERAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 666; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS VIBRIO CHOLERAE, SODIUM TRANSLOCATION, NQR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.FRITZ REVDAT 3 20-DEC-23 4UAJ 1 REMARK REVDAT 2 11-OCT-17 4UAJ 1 REMARK REVDAT 1 05-AUG-15 4UAJ 0 JRNL AUTH J.STEUBER,G.VOHL,M.S.CASUTT,T.VORBURGER,K.DIEDERICHS,G.FRITZ JRNL TITL STRUCTURE OF THE V. CHOLERAE NA+-PUMPING NADH:QUINONE JRNL TITL 2 OXIDOREDUCTASE. JRNL REF NATURE V. 516 62 2014 JRNL REFN ESSN 1476-4687 JRNL PMID 25471880 JRNL DOI 10.1038/NATURE14003 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5417 - 4.9082 1.00 2677 140 0.1805 0.2120 REMARK 3 2 4.9082 - 3.8964 1.00 2517 133 0.1469 0.2007 REMARK 3 3 3.8964 - 3.4040 1.00 2482 131 0.1757 0.2152 REMARK 3 4 3.4040 - 3.0928 1.00 2474 130 0.2152 0.2688 REMARK 3 5 3.0928 - 2.8712 1.00 2458 129 0.2527 0.3242 REMARK 3 6 2.8712 - 2.7019 0.99 2412 127 0.2920 0.3171 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2378 REMARK 3 ANGLE : 0.516 3233 REMARK 3 CHIRALITY : 0.035 318 REMARK 3 PLANARITY : 0.004 417 REMARK 3 DIHEDRAL : 15.287 873 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.7921 -5.9727 -7.3116 REMARK 3 T TENSOR REMARK 3 T11: 0.9978 T22: 0.3271 REMARK 3 T33: 0.4793 T12: 0.0836 REMARK 3 T13: -0.0675 T23: -0.0789 REMARK 3 L TENSOR REMARK 3 L11: 2.2021 L22: 6.4328 REMARK 3 L33: 0.6428 L12: 0.3103 REMARK 3 L13: 0.2494 L23: 0.5184 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: -0.0283 S13: 0.3493 REMARK 3 S21: -0.4744 S22: -0.1684 S23: 0.3858 REMARK 3 S31: -0.7241 S32: -0.4650 S33: 0.2766 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.3245 -11.3721 -9.9276 REMARK 3 T TENSOR REMARK 3 T11: 0.7141 T22: 0.2613 REMARK 3 T33: 0.4386 T12: -0.0168 REMARK 3 T13: 0.0883 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 4.4302 L22: 5.1892 REMARK 3 L33: 2.6447 L12: -1.0543 REMARK 3 L13: 0.9004 L23: -0.8507 REMARK 3 S TENSOR REMARK 3 S11: 0.1368 S12: 0.0683 S13: 0.5690 REMARK 3 S21: -0.5436 S22: -0.2020 S23: -0.6066 REMARK 3 S31: -0.5091 S32: 0.2445 S33: 0.1883 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.8795 -20.3756 -5.0178 REMARK 3 T TENSOR REMARK 3 T11: 0.5740 T22: 0.3254 REMARK 3 T33: 0.4581 T12: 0.0539 REMARK 3 T13: -0.0272 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 6.3335 L22: 6.3126 REMARK 3 L33: 5.1451 L12: -0.5125 REMARK 3 L13: 0.6374 L23: -0.9729 REMARK 3 S TENSOR REMARK 3 S11: 0.0467 S12: -0.4663 S13: -0.3287 REMARK 3 S21: -0.2533 S22: -0.0507 S23: -1.0507 REMARK 3 S31: 0.7117 S32: 0.5197 S33: -0.0319 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.9612 -14.7449 -9.6436 REMARK 3 T TENSOR REMARK 3 T11: 0.6667 T22: 0.2688 REMARK 3 T33: 0.3517 T12: 0.1046 REMARK 3 T13: -0.0621 T23: -0.0683 REMARK 3 L TENSOR REMARK 3 L11: 2.3838 L22: 4.3962 REMARK 3 L33: 2.3268 L12: 1.1400 REMARK 3 L13: -0.2570 L23: -0.2481 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: -0.0428 S13: 0.3469 REMARK 3 S21: -0.4274 S22: -0.0358 S23: 0.3531 REMARK 3 S31: -0.4142 S32: -0.2357 S33: -0.0098 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.2209 -21.1766 -0.4581 REMARK 3 T TENSOR REMARK 3 T11: 0.4028 T22: 0.3110 REMARK 3 T33: 0.3209 T12: -0.0020 REMARK 3 T13: 0.0097 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 4.6649 L22: 8.4599 REMARK 3 L33: 7.5669 L12: 1.0948 REMARK 3 L13: 0.4970 L23: -0.5341 REMARK 3 S TENSOR REMARK 3 S11: 0.3823 S12: -0.2787 S13: 0.4695 REMARK 3 S21: 0.3880 S22: -0.3927 S23: 0.4918 REMARK 3 S31: -0.1383 S32: -0.3471 S33: 0.0649 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.6449 -26.2488 5.7651 REMARK 3 T TENSOR REMARK 3 T11: 0.5148 T22: 0.3606 REMARK 3 T33: 0.3525 T12: -0.0883 REMARK 3 T13: 0.0393 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 6.9604 L22: 8.0876 REMARK 3 L33: 5.9788 L12: -1.3231 REMARK 3 L13: 1.3152 L23: -0.9585 REMARK 3 S TENSOR REMARK 3 S11: 0.3220 S12: -0.7150 S13: -0.4084 REMARK 3 S21: 0.5759 S22: -0.2461 S23: 0.4929 REMARK 3 S31: 0.0694 S32: -0.3991 S33: -0.0171 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 355 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.8459 -33.3859 -8.9232 REMARK 3 T TENSOR REMARK 3 T11: 0.6490 T22: 0.3870 REMARK 3 T33: 0.5242 T12: -0.0755 REMARK 3 T13: -0.1526 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 6.6336 L22: 6.4537 REMARK 3 L33: 5.8012 L12: 3.1888 REMARK 3 L13: 0.3129 L23: 0.5482 REMARK 3 S TENSOR REMARK 3 S11: -0.0544 S12: 0.0149 S13: -0.3018 REMARK 3 S21: -0.9756 S22: -0.0896 S23: 0.9225 REMARK 3 S31: 0.7497 S32: -0.6105 S33: 0.1590 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.7207 -26.5596 -17.1130 REMARK 3 T TENSOR REMARK 3 T11: 0.9012 T22: 0.6509 REMARK 3 T33: 0.6485 T12: -0.2071 REMARK 3 T13: -0.2167 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 3.9236 L22: 9.6271 REMARK 3 L33: 2.0940 L12: 6.1445 REMARK 3 L13: -0.4971 L23: -0.8613 REMARK 3 S TENSOR REMARK 3 S11: -0.9618 S12: 1.0190 S13: -0.7192 REMARK 3 S21: -1.4412 S22: 1.2957 S23: -0.0078 REMARK 3 S31: 0.1963 S32: -0.6284 S33: -0.3566 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203092. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15815 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.534 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 23.70 REMARK 200 R MERGE (I) : 0.22700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.42700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4U9U REMARK 200 REMARK 200 REMARK: HEXAGONAL CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES NAOH PH 6.6, 2.2 M REMARK 280 (NH4)2SO4, 0.6% PEG 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.06667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.03333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.05000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.01667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.08333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.06667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 30.03333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 15.01667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.05000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 75.08333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 125 REMARK 465 SER A 126 REMARK 465 HIS A 127 REMARK 465 MET A 128 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 140 50.59 -148.02 REMARK 500 ASN A 237 70.70 -155.95 REMARK 500 GLU A 266 -15.06 -146.89 REMARK 500 TYR A 363 -60.06 -157.70 REMARK 500 GLU A 371 -168.65 -73.47 REMARK 500 CYS A 378 115.49 -165.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4U9U RELATED DB: PDB REMARK 900 SAME PROTEIN CRYSTALLIZED IN DIFFERENT SPACE GROUP. DBREF 4UAJ A 129 408 UNP A5F5Y4 NQRF_VIBC3 129 408 SEQADV 4UAJ GLY A 125 UNP A5F5Y4 EXPRESSION TAG SEQADV 4UAJ SER A 126 UNP A5F5Y4 EXPRESSION TAG SEQADV 4UAJ HIS A 127 UNP A5F5Y4 EXPRESSION TAG SEQADV 4UAJ MET A 128 UNP A5F5Y4 EXPRESSION TAG SEQRES 1 A 284 GLY SER HIS MET GLY VAL LYS LYS TRP GLU CYS THR VAL SEQRES 2 A 284 ILE SER ASN ASP ASN LYS ALA THR PHE ILE LYS GLU LEU SEQRES 3 A 284 LYS LEU ALA ILE PRO ASP GLY GLU SER VAL PRO PHE ARG SEQRES 4 A 284 ALA GLY GLY TYR ILE GLN ILE GLU ALA PRO ALA HIS HIS SEQRES 5 A 284 VAL LYS TYR ALA ASP PHE ASP VAL PRO GLU LYS TYR ARG SEQRES 6 A 284 GLY ASP TRP ASP LYS PHE ASN LEU PHE ARG TYR GLU SER SEQRES 7 A 284 LYS VAL ASP GLU PRO ILE ILE ARG ALA TYR SER MET ALA SEQRES 8 A 284 ASN TYR PRO GLU GLU PHE GLY ILE ILE MET LEU ASN VAL SEQRES 9 A 284 ARG ILE ALA THR PRO PRO PRO ASN ASN PRO ASN VAL PRO SEQRES 10 A 284 PRO GLY GLN MET SER SER TYR ILE TRP SER LEU LYS ALA SEQRES 11 A 284 GLY ASP LYS CYS THR ILE SER GLY PRO PHE GLY GLU PHE SEQRES 12 A 284 PHE ALA LYS ASP THR ASP ALA GLU MET VAL PHE ILE GLY SEQRES 13 A 284 GLY GLY ALA GLY MET ALA PRO MET ARG SER HIS ILE PHE SEQRES 14 A 284 ASP GLN LEU LYS ARG LEU LYS SER LYS ARG LYS MET SER SEQRES 15 A 284 TYR TRP TYR GLY ALA ARG SER LYS ARG GLU MET PHE TYR SEQRES 16 A 284 VAL GLU ASP PHE ASP GLY LEU ALA ALA GLU ASN ASP ASN SEQRES 17 A 284 PHE VAL TRP HIS CYS ALA LEU SER ASP PRO GLN PRO GLU SEQRES 18 A 284 ASP ASN TRP THR GLY TYR THR GLY PHE ILE HIS ASN VAL SEQRES 19 A 284 LEU TYR GLU ASN TYR LEU LYS ASP HIS GLU ALA PRO GLU SEQRES 20 A 284 ASP CYS GLU TYR TYR MET CYS GLY PRO PRO MET MET ASN SEQRES 21 A 284 ALA ALA VAL ILE ASN MET LEU LYS ASN LEU GLY VAL GLU SEQRES 22 A 284 GLU GLU ASN ILE LEU LEU ASP ASP PHE GLY GLY HET FAD A 501 53 HET SO4 A 502 5 HET SO4 A 503 5 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *50(H2 O) HELIX 1 AA1 PRO A 155 GLU A 158 5 4 HELIX 2 AA2 ALA A 180 PHE A 182 5 3 HELIX 3 AA3 PRO A 185 PHE A 195 1 11 HELIX 4 AA4 ASN A 196 ARG A 199 5 4 HELIX 5 AA5 GLY A 243 LEU A 252 1 10 HELIX 6 AA6 GLY A 284 LYS A 297 1 14 HELIX 7 AA7 SER A 313 MET A 317 5 5 HELIX 8 AA8 TYR A 319 ASN A 330 1 12 HELIX 9 AA9 GLN A 343 ASN A 347 5 5 HELIX 10 AB1 PHE A 354 TYR A 363 1 10 HELIX 11 AB2 PRO A 380 ASN A 393 1 14 HELIX 12 AB3 GLU A 397 GLU A 399 5 3 SHEET 1 AA1 6 ILE A 208 SER A 213 0 SHEET 2 AA1 6 TYR A 167 ALA A 172 -1 N ILE A 168 O TYR A 212 SHEET 3 AA1 6 LYS A 257 PHE A 264 -1 O PHE A 264 N TYR A 167 SHEET 4 AA1 6 LYS A 131 ASN A 142 -1 N CYS A 135 O CYS A 258 SHEET 5 AA1 6 ILE A 147 ALA A 153 -1 O LYS A 151 N ILE A 138 SHEET 6 AA1 6 ILE A 223 ARG A 229 -1 O ILE A 224 N LEU A 152 SHEET 1 AA2 2 HIS A 175 LYS A 178 0 SHEET 2 AA2 2 GLU A 201 VAL A 204 -1 O VAL A 204 N HIS A 175 SHEET 1 AA3 6 TYR A 351 THR A 352 0 SHEET 2 AA3 6 PHE A 333 LEU A 339 1 N LEU A 339 O TYR A 351 SHEET 3 AA3 6 MET A 305 ALA A 311 1 N TYR A 307 O HIS A 336 SHEET 4 AA3 6 GLU A 275 GLY A 281 1 N PHE A 278 O SER A 306 SHEET 5 AA3 6 CYS A 373 CYS A 378 1 O GLU A 374 N GLU A 275 SHEET 6 AA3 6 ILE A 401 LEU A 403 1 O LEU A 402 N TYR A 375 CISPEP 1 GLY A 262 PRO A 263 0 -1.04 SITE 1 AC1 22 ARG A 210 ALA A 211 TYR A 212 SER A 213 SITE 2 AC1 22 ASN A 227 VAL A 228 ARG A 229 ALA A 231 SITE 3 AC1 22 THR A 232 PRO A 233 PRO A 234 VAL A 240 SITE 4 AC1 22 PRO A 241 GLY A 243 GLN A 244 MET A 245 SITE 5 AC1 22 SER A 246 PHE A 406 HOH A 610 HOH A 614 SITE 6 AC1 22 HOH A 615 HOH A 631 SITE 1 AC2 5 LYS A 143 TYR A 319 VAL A 320 GLU A 321 SITE 2 AC2 5 HOH A 612 SITE 1 AC3 4 ARG A 229 GLY A 282 ARG A 312 PRO A 380 CRYST1 145.220 145.220 90.100 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006886 0.003976 0.000000 0.00000 SCALE2 0.000000 0.007951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011099 0.00000