HEADER TRANSFERASE 10-AUG-14 4UAK TITLE MRCK BETA IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE MRCK BETA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CDC42-BINDING PROTEIN KINASE BETA,CDC42BP-BETA,DMPK-LIKE COMPND 5 BETA,MYOTONIC DYSTROPHY KINASE-RELATED CDC42-BINDING KINASE BETA, COMPND 6 MYOTONIC DYSTROPHY PROTEIN KINASE-LIKE BETA; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDC42BPB, KIAA1124; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MYOTONIC DYSTROPHY KINASE-RELATED CDC42-BINDING KINASE, METASTASIS, KEYWDS 2 CELL INVASION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.W.SCHUETTELKOPF REVDAT 2 20-DEC-23 4UAK 1 LINK REVDAT 1 22-OCT-14 4UAK 0 JRNL AUTH M.UNBEKANDT,D.R.CROFT,D.CRIGHTON,M.MEZNA,D.MCARTHUR, JRNL AUTH 2 P.MCCONNELL,A.W.SCHUTTELKOPF,S.BELSHAW,A.PANNIFER,M.SIME, JRNL AUTH 3 J.BOWER,M.DRYSDALE,M.F.OLSON JRNL TITL A NOVEL SMALL-MOLECULE MRCK INHIBITOR BLOCKS CANCER CELL JRNL TITL 2 INVASION. JRNL REF CELL COMMUN. SIGNAL V. 12 54 2014 JRNL REFN ISSN 1478-811X JRNL PMID 25288205 JRNL DOI 10.1186/PREACCEPT-1467335606136283 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 42457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2253 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3123 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.38000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : 1.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.131 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3410 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4606 ; 1.701 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 491 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2595 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1634 ; 1.285 ; 2.337 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2046 ; 2.089 ; 3.497 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1776 ; 1.833 ; 2.554 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4546 ; 4.930 ;23.750 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 808 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8338 0.7578 19.0874 REMARK 3 T TENSOR REMARK 3 T11: 0.0468 T22: 0.0279 REMARK 3 T33: 0.0239 T12: -0.0083 REMARK 3 T13: 0.0189 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.8785 L22: 0.0294 REMARK 3 L33: 0.5142 L12: -0.0904 REMARK 3 L13: 0.5862 L23: -0.0310 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.0621 S13: 0.0130 REMARK 3 S21: 0.0208 S22: 0.0134 S23: -0.0020 REMARK 3 S31: -0.0105 S32: 0.0094 S33: -0.0104 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44725 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 26.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3TKU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-18% PEG 3350, 100MM AMMONIUM REMARK 280 SULPHATE, 100MM SODIUM POTASSIUM TARTRATE, 100MM BIS-TRIS PH 5.6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.10000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.98500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.10000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.98500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 662 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 372 REMARK 465 ASP A 373 REMARK 465 ASP A 374 REMARK 465 ASP A 375 REMARK 465 VAL A 376 REMARK 465 LEU A 377 REMARK 465 ARG A 378 REMARK 465 ASN A 379 REMARK 465 THR A 380 REMARK 465 GLU A 381 REMARK 465 ILE A 382 REMARK 465 LEU A 383 REMARK 465 PRO A 384 REMARK 465 PRO A 385 REMARK 465 GLY A 386 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 47 CA - C - N ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG A 47 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG A 47 O - C - N ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG A 122 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 122 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 LEU A 194 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 115 58.06 -113.82 REMARK 500 ASP A 170 0.75 84.31 REMARK 500 ASP A 200 51.08 -146.42 REMARK 500 ASP A 218 81.15 71.43 REMARK 500 ASN A 226 170.34 -58.14 REMARK 500 SER A 234 -70.68 -64.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 234 VAL A 235 -142.69 REMARK 500 GLY A 254 MET A 255 -149.14 REMARK 500 ILE A 333 GLU A 334 149.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 805 DISTANCE = 6.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 205 OD1 REMARK 620 2 ASP A 218 OD2 99.7 REMARK 620 3 ADP A 501 O2B 175.4 83.8 REMARK 620 4 ADP A 501 O2A 91.7 94.6 85.1 REMARK 620 5 HOH A 778 O 93.5 82.4 89.9 174.4 REMARK 620 6 HOH A 779 O 84.4 173.2 92.4 90.7 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 218 OD1 REMARK 620 2 ASP A 218 OD2 61.7 REMARK 620 3 ADP A 501 O1B 78.5 84.5 REMARK 620 4 HOH A 737 O 90.2 84.3 166.9 REMARK 620 5 HOH A 777 O 158.3 100.9 87.4 101.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 DBREF 4UAK A 2 417 UNP Q9Y5S2 MRCKB_HUMAN 2 417 SEQADV 4UAK GLY A -1 UNP Q9Y5S2 EXPRESSION TAG SEQADV 4UAK GLY A 0 UNP Q9Y5S2 EXPRESSION TAG SEQADV 4UAK SER A 1 UNP Q9Y5S2 EXPRESSION TAG SEQRES 1 A 419 GLY GLY SER SER ALA LYS VAL ARG LEU LYS LYS LEU GLU SEQRES 2 A 419 GLN LEU LEU LEU ASP GLY PRO TRP ARG ASN GLU SER ALA SEQRES 3 A 419 LEU SER VAL GLU THR LEU LEU ASP VAL LEU VAL CYS LEU SEQRES 4 A 419 TYR THR GLU CYS SER HIS SER ALA LEU ARG ARG ASP LYS SEQRES 5 A 419 TYR VAL ALA GLU PHE LEU GLU TRP ALA LYS PRO PHE THR SEQRES 6 A 419 GLN LEU VAL LYS GLU MET GLN LEU HIS ARG GLU ASP PHE SEQRES 7 A 419 GLU ILE ILE LYS VAL ILE GLY ARG GLY ALA PHE GLY GLU SEQRES 8 A 419 VAL ALA VAL VAL LYS MET LYS ASN THR GLU ARG ILE TYR SEQRES 9 A 419 ALA MET LYS ILE LEU ASN LYS TRP GLU MET LEU LYS ARG SEQRES 10 A 419 ALA GLU THR ALA CYS PHE ARG GLU GLU ARG ASP VAL LEU SEQRES 11 A 419 VAL ASN GLY ASP CYS GLN TRP ILE THR ALA LEU HIS TYR SEQRES 12 A 419 ALA PHE GLN ASP GLU ASN HIS LEU TYR LEU VAL MET ASP SEQRES 13 A 419 TYR TYR VAL GLY GLY ASP LEU LEU THR LEU LEU SER LYS SEQRES 14 A 419 PHE GLU ASP LYS LEU PRO GLU ASP MET ALA ARG PHE TYR SEQRES 15 A 419 ILE GLY GLU MET VAL LEU ALA ILE ASP SER ILE HIS GLN SEQRES 16 A 419 LEU HIS TYR VAL HIS ARG ASP ILE LYS PRO ASP ASN VAL SEQRES 17 A 419 LEU LEU ASP VAL ASN GLY HIS ILE ARG LEU ALA ASP PHE SEQRES 18 A 419 GLY SER CYS LEU LYS MET ASN ASP ASP GLY THR VAL GLN SEQRES 19 A 419 SER SER VAL ALA VAL GLY THR PRO ASP TYR ILE SER PRO SEQRES 20 A 419 GLU ILE LEU GLN ALA MET GLU ASP GLY MET GLY LYS TYR SEQRES 21 A 419 GLY PRO GLU CYS ASP TRP TRP SER LEU GLY VAL CYS MET SEQRES 22 A 419 TYR GLU MET LEU TYR GLY GLU THR PRO PHE TYR ALA GLU SEQRES 23 A 419 SER LEU VAL GLU THR TYR GLY LYS ILE MET ASN HIS GLU SEQRES 24 A 419 GLU ARG PHE GLN PHE PRO SER HIS VAL THR ASP VAL SER SEQRES 25 A 419 GLU GLU ALA LYS ASP LEU ILE GLN ARG LEU ILE CYS SER SEQRES 26 A 419 ARG GLU ARG ARG LEU GLY GLN ASN GLY ILE GLU ASP PHE SEQRES 27 A 419 LYS LYS HIS ALA PHE PHE GLU GLY LEU ASN TRP GLU ASN SEQRES 28 A 419 ILE ARG ASN LEU GLU ALA PRO TYR ILE PRO ASP VAL SER SEQRES 29 A 419 SER PRO SER ASP THR SER ASN PHE ASP VAL ASP ASP ASP SEQRES 30 A 419 VAL LEU ARG ASN THR GLU ILE LEU PRO PRO GLY SER HIS SEQRES 31 A 419 THR GLY PHE SER GLY LEU HIS LEU PRO PHE ILE GLY PHE SEQRES 32 A 419 THR PHE THR THR GLU SER CYS PHE SER ASP ARG GLY SER SEQRES 33 A 419 LEU LYS SER HET ADP A 501 27 HET MG A 502 1 HET MG A 503 1 HET CL A 504 1 HET CL A 505 1 HET EDO A 506 4 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG 2(MG 2+) FORMUL 5 CL 2(CL 1-) FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *208(H2 O) HELIX 1 AA1 SER A 2 ASN A 21 1 20 HELIX 2 AA2 SER A 26 SER A 42 1 17 HELIX 3 AA3 HIS A 43 ARG A 48 1 6 HELIX 4 AA4 ASP A 49 GLN A 70 1 22 HELIX 5 AA5 HIS A 72 GLU A 74 5 3 HELIX 6 AA6 LYS A 109 ARG A 115 1 7 HELIX 7 AA7 CYS A 120 GLY A 131 1 12 HELIX 8 AA8 LEU A 161 PHE A 168 1 8 HELIX 9 AA9 PRO A 173 LEU A 194 1 22 HELIX 10 AB1 LYS A 202 ASP A 204 5 3 HELIX 11 AB2 THR A 239 ILE A 243 5 5 HELIX 12 AB3 SER A 244 GLY A 254 1 11 HELIX 13 AB4 PRO A 260 GLY A 277 1 18 HELIX 14 AB5 SER A 285 ASN A 295 1 11 HELIX 15 AB6 ASN A 295 PHE A 300 1 6 HELIX 16 AB7 SER A 310 ARG A 319 1 10 HELIX 17 AB8 SER A 323 ARG A 327 5 5 HELIX 18 AB9 ILE A 333 LYS A 338 1 6 HELIX 19 AC1 HIS A 339 GLU A 343 5 5 HELIX 20 AC2 ASN A 349 LEU A 353 5 5 HELIX 21 AC3 HIS A 395 ILE A 399 5 5 SHEET 1 AA1 6 PHE A 76 ARG A 84 0 SHEET 2 AA1 6 GLY A 88 MET A 95 -1 O VAL A 92 N LYS A 80 SHEET 3 AA1 6 ILE A 101 ASN A 108 -1 O MET A 104 N ALA A 91 SHEET 4 AA1 6 HIS A 148 MET A 153 -1 O LEU A 151 N LYS A 105 SHEET 5 AA1 6 LEU A 139 GLN A 144 -1 N TYR A 141 O VAL A 152 SHEET 6 AA1 6 PHE A 403 THR A 404 -1 O PHE A 403 N ALA A 142 SHEET 1 AA2 3 GLY A 159 ASP A 160 0 SHEET 2 AA2 3 VAL A 206 LEU A 208 -1 O LEU A 208 N GLY A 159 SHEET 3 AA2 3 ILE A 214 LEU A 216 -1 O ARG A 215 N LEU A 207 SHEET 1 AA3 2 TYR A 196 VAL A 197 0 SHEET 2 AA3 2 LEU A 223 LYS A 224 -1 O LEU A 223 N VAL A 197 SHEET 1 AA4 2 VAL A 231 GLN A 232 0 SHEET 2 AA4 2 LYS A 257 TYR A 258 -1 O TYR A 258 N VAL A 231 LINK OD1 ASN A 205 MG MG A 503 1555 1555 2.17 LINK OD1 ASP A 218 MG MG A 502 1555 1555 2.17 LINK OD2 ASP A 218 MG MG A 502 1555 1555 2.16 LINK OD2 ASP A 218 MG MG A 503 1555 1555 2.16 LINK O1B ADP A 501 MG MG A 502 1555 1555 2.17 LINK O2B ADP A 501 MG MG A 503 1555 1555 2.17 LINK O2A ADP A 501 MG MG A 503 1555 1555 2.17 LINK MG MG A 502 O HOH A 737 1555 1555 2.04 LINK MG MG A 502 O HOH A 777 1555 1555 1.99 LINK MG MG A 503 O HOH A 778 1555 1555 2.00 LINK MG MG A 503 O HOH A 779 1555 1555 1.86 SITE 1 AC1 19 ILE A 82 ALA A 103 LYS A 105 MET A 153 SITE 2 AC1 19 ASP A 154 TYR A 155 TYR A 156 ASP A 160 SITE 3 AC1 19 ASP A 204 ASN A 205 LEU A 207 ASP A 218 SITE 4 AC1 19 PHE A 370 MG A 502 MG A 503 HOH A 777 SITE 5 AC1 19 HOH A 778 HOH A 779 HOH A 792 SITE 1 AC2 4 ASP A 218 ADP A 501 HOH A 737 HOH A 777 SITE 1 AC3 5 ASN A 205 ASP A 218 ADP A 501 HOH A 778 SITE 2 AC3 5 HOH A 779 SITE 1 AC4 2 PHE A 391 LYS A 416 SITE 1 AC5 2 VAL A 157 VAL A 210 SITE 1 AC6 6 LYS A 105 LEU A 107 ALA A 119 CYS A 120 SITE 2 AC6 6 GLU A 124 GLY A 220 CRYST1 114.200 43.970 91.330 90.00 107.41 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008757 0.000000 0.002746 0.00000 SCALE2 0.000000 0.022743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011475 0.00000