HEADER PROTEIN TRANSPORT 11-AUG-14 4UAQ TITLE CRYSTAL STRUCTURE OF THE ACCESSORY TRANSLOCATION ATPASE, SECA2, FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRANSLOCASE SUBUNIT SECA 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 31-808; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 GENE: SECA2, RV1821, MTCY1A11.22C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN TRANSPORT, DEAD/DEAH BOX HELICASE PREPROTEIN TRANSLOCATION KEYWDS 2 ATP BINDING SECA PREPROTEIN CROSS-LINKING DOMAIN, STRUCTURAL KEYWDS 3 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, TB STRUCTURAL KEYWDS 4 GENOMICS CONSORTIUM, TBSGC EXPDTA X-RAY DIFFRACTION AUTHOR S.SWANSON-SMITH,T.R.IOERGER,N.W.RIGEL,B.K.MILLER,M.BRAUNSTEIN, AUTHOR 2 J.C.SACCHETTINI,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 3 10-FEB-16 4UAQ 1 JRNL REVDAT 2 13-JAN-16 4UAQ 1 JRNL REVDAT 1 09-SEP-15 4UAQ 0 JRNL AUTH S.SWANSON,T.R.IOERGER,N.W.RIGEL,B.K.MILLER,M.BRAUNSTEIN, JRNL AUTH 2 J.C.SACCHETTINI JRNL TITL STRUCTURAL SIMILARITIES AND DIFFERENCES BETWEEN TWO JRNL TITL 2 FUNCTIONALLY DISTINCT SECA PROTEINS, MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS SECA1 AND SECA2. JRNL REF J.BACTERIOL. V. 198 720 2015 JRNL REFN ESSN 1098-5530 JRNL PMID 26668263 JRNL DOI 10.1128/JB.00696-15 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 16255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 835 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1409 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3140 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1329 REMARK 3 BIN R VALUE (WORKING SET) : 0.3065 REMARK 3 BIN FREE R VALUE : 0.4423 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.68 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 80 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.61510 REMARK 3 B22 (A**2) : 4.66610 REMARK 3 B33 (A**2) : 7.94890 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -5.09330 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.479 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4968 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6808 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1553 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 98 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 787 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4968 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 720 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5537 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.26 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.44 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.67 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UAQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 290 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16255 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13100 REMARK 200 FOR THE DATA SET : 14.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 29.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.604 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, REMARK 280 TRIS(HYDROXYMETHYL)AMINOMETHANE), NACL, ETHYLENE GLYCOL, 3-[(3- REMARK 280 CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE (CHAPS), PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 81.04500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 PRO A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 ARG A 6 REMARK 465 ALA A 7 REMARK 465 GLN A 8 REMARK 465 PRO A 9 REMARK 465 GLY A 10 REMARK 465 ARG A 11 REMARK 465 LEU A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 ARG A 15 REMARK 465 PHE A 16 REMARK 465 TRP A 17 REMARK 465 ARG A 18 REMARK 465 LEU A 19 REMARK 465 LEU A 20 REMARK 465 GLY A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 THR A 24 REMARK 465 GLU A 25 REMARK 465 LYS A 26 REMARK 465 ASN A 27 REMARK 465 HIS A 237 REMARK 465 ARG A 238 REMARK 465 GLU A 239 REMARK 465 ASN A 330 REMARK 465 ALA A 331 REMARK 465 SER A 332 REMARK 465 ARG A 333 REMARK 465 GLY A 334 REMARK 465 ARG A 335 REMARK 465 ILE A 336 REMARK 465 ALA A 337 REMARK 465 GLN A 338 REMARK 465 LEU A 339 REMARK 465 GLN A 340 REMARK 465 ARG A 341 REMARK 465 ASN A 734 REMARK 465 VAL A 735 REMARK 465 LEU A 736 REMARK 465 ASP A 737 REMARK 465 HIS A 738 REMARK 465 GLU A 739 REMARK 465 PRO A 740 REMARK 465 GLY A 741 REMARK 465 LEU A 742 REMARK 465 ASP A 743 REMARK 465 LEU A 744 REMARK 465 SER A 745 REMARK 465 LYS A 746 REMARK 465 LEU A 747 REMARK 465 ALA A 748 REMARK 465 ARG A 749 REMARK 465 SER A 764 REMARK 465 ASP A 765 REMARK 465 ASP A 766 REMARK 465 THR A 767 REMARK 465 LEU A 768 REMARK 465 SER A 769 REMARK 465 ALA A 770 REMARK 465 LEU A 771 REMARK 465 SER A 772 REMARK 465 LEU A 773 REMARK 465 PRO A 774 REMARK 465 GLY A 775 REMARK 465 VAL A 776 REMARK 465 PHE A 777 REMARK 465 ARG A 778 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 32 CG CD1 CD2 REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 ASP A 47 CG OD1 OD2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 LYS A 52 CE NZ REMARK 470 ARG A 54 CZ NH1 NH2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 ASN A 61 CG OD1 ND2 REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 88 CG CD1 CD2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 THR A 165 OG1 CG2 REMARK 470 ASP A 167 CG OD1 OD2 REMARK 470 ASP A 178 CG OD1 OD2 REMARK 470 THR A 200 OG1 CG2 REMARK 470 ASP A 201 CG OD1 OD2 REMARK 470 SER A 220 OG REMARK 470 THR A 240 OG1 CG2 REMARK 470 LEU A 243 CG CD1 CD2 REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 ILE A 246 CG1 CG2 CD1 REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 248 CG CD1 CD2 REMARK 470 LEU A 252 CG CD1 CD2 REMARK 470 ASP A 255 CG OD1 OD2 REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 ASP A 257 CG OD1 OD2 REMARK 470 ASP A 259 CG OD1 OD2 REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 TYR A 261 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 262 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 265 CG OD1 OD2 REMARK 470 ASP A 267 CG OD1 OD2 REMARK 470 ASN A 268 CG OD1 ND2 REMARK 470 ARG A 269 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 270 CG OD1 ND2 REMARK 470 VAL A 271 CG1 CG2 REMARK 470 HIS A 272 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 276 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 LEU A 285 CG CD1 CD2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 VAL A 296 CG1 CG2 REMARK 470 LEU A 307 CG CD1 CD2 REMARK 470 VAL A 311 CG1 CG2 REMARK 470 GLN A 314 CG CD OE1 NE2 REMARK 470 ASP A 316 CG OD1 OD2 REMARK 470 ILE A 320 CG1 CG2 CD1 REMARK 470 ARG A 322 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 323 CG OD1 OD2 REMARK 470 ASP A 324 CG OD1 OD2 REMARK 470 VAL A 326 CG1 CG2 REMARK 470 LEU A 328 CG CD1 CD2 REMARK 470 ILE A 329 CG1 CG2 CD1 REMARK 470 ASP A 344 CG OD1 OD2 REMARK 470 LEU A 346 CG CD1 CD2 REMARK 470 ILE A 356 CG1 CG2 CD1 REMARK 470 GLU A 357 CG CD OE1 OE2 REMARK 470 THR A 359 OG1 CG2 REMARK 470 GLU A 360 CG CD OE1 OE2 REMARK 470 GLU A 392 CG CD OE1 OE2 REMARK 470 GLN A 396 CG CD OE1 NE2 REMARK 470 SER A 403 OG REMARK 470 LYS A 409 CG CD CE NZ REMARK 470 ILE A 422 CG1 CG2 CD1 REMARK 470 THR A 423 OG1 CG2 REMARK 470 GLU A 433 CG CD OE1 OE2 REMARK 470 GLU A 437 CG CD OE1 OE2 REMARK 470 VAL A 438 CG1 CG2 REMARK 470 ARG A 450 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 451 CG OD1 OD2 REMARK 470 VAL A 452 CG1 CG2 REMARK 470 GLU A 454 CG CD OE1 OE2 REMARK 470 GLU A 456 CG CD OE1 OE2 REMARK 470 GLU A 457 CG CD OE1 OE2 REMARK 470 GLU A 460 CG CD OE1 OE2 REMARK 470 ARG A 464 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 465 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 473 CG OD1 ND2 REMARK 470 LYS A 475 CG CD CE NZ REMARK 470 ASN A 476 CG OD1 ND2 REMARK 470 GLU A 479 CG CD OE1 OE2 REMARK 470 ARG A 482 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 498 CG CD OE1 NE2 REMARK 470 MSE A 499 CG SE CE REMARK 470 ARG A 502 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 507 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 512 CG OD1 OD2 REMARK 470 GLU A 521 CG CD OE1 OE2 REMARK 470 GLN A 541 CG CD OE1 NE2 REMARK 470 GLN A 549 CG CD OE1 NE2 REMARK 470 ASP A 564 CG OD1 OD2 REMARK 470 ASN A 569 CG OD1 ND2 REMARK 470 LYS A 574 CG CD CE NZ REMARK 470 LEU A 593 CG CD1 CD2 REMARK 470 GLU A 602 CG CD OE1 OE2 REMARK 470 ASP A 607 CG OD1 OD2 REMARK 470 HIS A 609 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 611 CG OD1 ND2 REMARK 470 ARG A 614 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 615 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 629 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 635 CG CD NE CZ NH1 NH2 REMARK 470 THR A 636 OG1 CG2 REMARK 470 ARG A 640 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 641 CG CD OE1 OE2 REMARK 470 GLU A 642 CG CD OE1 OE2 REMARK 470 LEU A 643 CG CD1 CD2 REMARK 470 GLU A 645 CG CD OE1 OE2 REMARK 470 LEU A 646 CG CD1 CD2 REMARK 470 LYS A 649 CG CD CE NZ REMARK 470 ARG A 650 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 651 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 652 CG CD OE1 OE2 REMARK 470 GLU A 653 CG CD OE1 OE2 REMARK 470 LEU A 654 CG CD1 CD2 REMARK 470 ASP A 656 CG OD1 OD2 REMARK 470 GLU A 661 CG CD OE1 OE2 REMARK 470 LEU A 663 CG CD1 CD2 REMARK 470 GLU A 664 CG CD OE1 OE2 REMARK 470 THR A 665 OG1 CG2 REMARK 470 ILE A 666 CG1 CG2 CD1 REMARK 470 CYS A 667 SG REMARK 470 GLN A 669 CG CD OE1 NE2 REMARK 470 ILE A 670 CG1 CG2 CD1 REMARK 470 LEU A 672 CG CD1 CD2 REMARK 470 ASP A 676 CG OD1 OD2 REMARK 470 ASP A 688 CG OD1 OD2 REMARK 470 SER A 692 OG REMARK 470 ILE A 693 CG1 CG2 CD1 REMARK 470 LEU A 698 CG CD1 CD2 REMARK 470 ARG A 700 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 701 CG CD OE1 NE2 REMARK 470 ASN A 702 CG OD1 ND2 REMARK 470 LEU A 704 CG CD1 CD2 REMARK 470 ASP A 705 CG OD1 OD2 REMARK 470 GLU A 706 CG CD OE1 OE2 REMARK 470 ARG A 709 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 713 CG OD1 OD2 REMARK 470 ASP A 721 CG OD1 OD2 REMARK 470 GLU A 724 CG CD OE1 OE2 REMARK 470 GLN A 728 CG CD OE1 NE2 REMARK 470 PHE A 730 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 763 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 38 -10.42 -49.52 REMARK 500 LEU A 59 55.53 -105.97 REMARK 500 LEU A 65 -116.89 41.36 REMARK 500 SER A 68 156.00 -35.15 REMARK 500 ARG A 85 -88.14 -84.25 REMARK 500 VAL A 136 97.51 -64.29 REMARK 500 ASN A 139 122.61 -173.27 REMARK 500 GLN A 197 30.63 -96.19 REMARK 500 VAL A 202 -44.48 -29.76 REMARK 500 VAL A 206 -72.97 -96.05 REMARK 500 ASP A 211 -82.99 -103.45 REMARK 500 ALA A 258 14.01 -149.31 REMARK 500 SER A 266 112.76 175.57 REMARK 500 ASN A 270 125.94 -37.41 REMARK 500 THR A 298 -73.77 -130.59 REMARK 500 VAL A 311 -72.30 -89.17 REMARK 500 ARG A 315 27.67 -69.12 REMARK 500 HIS A 318 -48.50 -136.00 REMARK 500 TYR A 319 -56.02 -138.81 REMARK 500 ILE A 320 164.33 68.05 REMARK 500 ARG A 322 -68.14 65.86 REMARK 500 ASP A 323 -90.43 -93.35 REMARK 500 ASP A 324 19.28 -154.15 REMARK 500 HIS A 327 -167.58 -118.30 REMARK 500 ASP A 344 113.23 -32.07 REMARK 500 THR A 359 -137.54 -146.15 REMARK 500 GLU A 360 9.90 55.49 REMARK 500 ALA A 389 4.00 -59.38 REMARK 500 ILE A 412 53.84 -113.90 REMARK 500 GLN A 443 125.51 -37.60 REMARK 500 ALA A 474 83.26 -65.66 REMARK 500 LYS A 475 -38.48 -138.42 REMARK 500 SER A 511 75.84 -49.24 REMARK 500 ASP A 512 103.87 63.21 REMARK 500 ARG A 545 2.03 -68.75 REMARK 500 ALA A 568 -36.00 66.33 REMARK 500 LEU A 634 33.62 -99.57 REMARK 500 ARG A 635 80.10 -159.33 REMARK 500 THR A 636 58.43 1.15 REMARK 500 GLU A 645 78.72 -109.54 REMARK 500 LEU A 646 -55.48 67.62 REMARK 500 SER A 659 133.98 -179.23 REMARK 500 SER A 692 36.04 -79.67 REMARK 500 ILE A 693 -51.01 -144.91 REMARK 500 ARG A 696 23.02 -67.70 REMARK 500 ALA A 697 -15.41 -152.73 REMARK 500 LEU A 698 -48.47 60.97 REMARK 500 LEU A 704 -73.16 -60.06 REMARK 500 ASP A 705 -20.08 64.29 REMARK 500 SER A 717 34.23 -98.72 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 861 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 862 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A 863 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH A 864 DISTANCE = 7.87 ANGSTROMS REMARK 525 HOH A 865 DISTANCE = 8.01 ANGSTROMS REMARK 525 HOH A 866 DISTANCE = 11.09 ANGSTROMS REMARK 525 HOH A 867 DISTANCE = 12.07 ANGSTROMS DBREF 4UAQ A 1 778 UNP P9WGP3 SECA2_MYCTU 31 808 SEQRES 1 A 778 VAL PRO LYS THR THR ARG ALA GLN PRO GLY ARG LEU SER SEQRES 2 A 778 SER ARG PHE TRP ARG LEU LEU GLY ALA SER THR GLU LYS SEQRES 3 A 778 ASN ARG SER ARG SER LEU ALA ASP VAL THR ALA SER ALA SEQRES 4 A 778 GLU TYR ASP LYS GLU ALA ALA ASP LEU SER ASP GLU LYS SEQRES 5 A 778 LEU ARG LYS ALA ALA GLY LEU LEU ASN LEU ASP ASP LEU SEQRES 6 A 778 ALA GLU SER ALA ASP ILE PRO GLN PHE LEU ALA ILE ALA SEQRES 7 A 778 ARG GLU ALA ALA GLU ARG ARG THR GLY LEU ARG PRO PHE SEQRES 8 A 778 ASP VAL GLN LEU LEU GLY ALA LEU ARG MSE LEU ALA GLY SEQRES 9 A 778 ASP VAL ILE GLU MSE ALA THR GLY GLU GLY LYS THR LEU SEQRES 10 A 778 ALA GLY ALA ILE ALA ALA ALA GLY TYR ALA LEU ALA GLY SEQRES 11 A 778 ARG HIS VAL HIS VAL VAL THR ILE ASN ASP TYR LEU ALA SEQRES 12 A 778 ARG ARG ASP ALA GLU TRP MSE GLY PRO LEU LEU ASP ALA SEQRES 13 A 778 MSE GLY LEU THR VAL GLY TRP ILE THR ALA ASP SER THR SEQRES 14 A 778 PRO ASP GLU ARG ARG THR ALA TYR ASP ARG ASP VAL THR SEQRES 15 A 778 TYR ALA SER VAL ASN GLU ILE GLY PHE ASP VAL LEU ARG SEQRES 16 A 778 ASP GLN LEU VAL THR ASP VAL ASN ASP LEU VAL SER PRO SEQRES 17 A 778 ASN PRO ASP VAL ALA LEU ILE ASP GLU ALA ASP SER VAL SEQRES 18 A 778 LEU VAL ASP GLU ALA LEU VAL PRO LEU VAL LEU ALA GLY SEQRES 19 A 778 THR THR HIS ARG GLU THR PRO ARG LEU GLU ILE ILE ARG SEQRES 20 A 778 LEU VAL ALA GLU LEU VAL GLY ASP LYS ASP ALA ASP GLU SEQRES 21 A 778 TYR PHE ALA THR ASP SER ASP ASN ARG ASN VAL HIS LEU SEQRES 22 A 778 THR GLU HIS GLY ALA ARG LYS VAL GLU LYS ALA LEU GLY SEQRES 23 A 778 GLY ILE ASP LEU TYR SER GLU GLU HIS VAL GLY THR THR SEQRES 24 A 778 LEU THR GLU VAL ASN VAL ALA LEU HIS ALA HIS VAL LEU SEQRES 25 A 778 LEU GLN ARG ASP VAL HIS TYR ILE VAL ARG ASP ASP ALA SEQRES 26 A 778 VAL HIS LEU ILE ASN ALA SER ARG GLY ARG ILE ALA GLN SEQRES 27 A 778 LEU GLN ARG TRP PRO ASP GLY LEU GLN ALA ALA VAL GLU SEQRES 28 A 778 ALA LYS GLU GLY ILE GLU THR THR GLU THR GLY GLU VAL SEQRES 29 A 778 LEU ASP THR ILE THR VAL GLN ALA LEU ILE ASN ARG TYR SEQRES 30 A 778 ALA THR VAL CYS GLY MSE THR GLY THR ALA LEU ALA ALA SEQRES 31 A 778 GLY GLU GLN LEU ARG GLN PHE TYR GLN LEU GLY VAL SER SEQRES 32 A 778 PRO ILE PRO PRO ASN LYS PRO ASN ILE ARG GLU ASP GLU SEQRES 33 A 778 ALA ASP ARG VAL TYR ILE THR THR ALA ALA LYS ASN ASP SEQRES 34 A 778 GLY ILE VAL GLU HIS ILE THR GLU VAL HIS GLN ARG GLY SEQRES 35 A 778 GLN PRO VAL LEU VAL GLY THR ARG ASP VAL ALA GLU SER SEQRES 36 A 778 GLU GLU LEU HIS GLU ARG LEU VAL ARG ARG GLY VAL PRO SEQRES 37 A 778 ALA VAL VAL LEU ASN ALA LYS ASN ASP ALA GLU GLU ALA SEQRES 38 A 778 ARG VAL ILE ALA GLU ALA GLY LYS TYR GLY ALA VAL THR SEQRES 39 A 778 VAL SER THR GLN MSE ALA GLY ARG GLY THR ASP ILE ARG SEQRES 40 A 778 LEU GLY GLY SER ASP GLU ALA ASP HIS ASP ARG VAL ALA SEQRES 41 A 778 GLU LEU GLY GLY LEU HIS VAL VAL GLY THR GLY ARG HIS SEQRES 42 A 778 HIS THR GLU ARG LEU ASP ASN GLN LEU ARG GLY ARG ALA SEQRES 43 A 778 GLY ARG GLN GLY ASP PRO GLY SER SER VAL PHE PHE SER SEQRES 44 A 778 SER TRP GLU ASP ASP VAL VAL ALA ALA ASN LEU ASP HIS SEQRES 45 A 778 ASN LYS LEU PRO MSE ALA THR ASP GLU ASN GLY ARG ILE SEQRES 46 A 778 VAL SER PRO ARG THR GLY SER LEU LEU ASP HIS ALA GLN SEQRES 47 A 778 ARG VAL ALA GLU GLY ARG LEU LEU ASP VAL HIS ALA ASN SEQRES 48 A 778 THR TRP ARG TYR ASN GLN LEU ILE ALA GLN GLN ARG ALA SEQRES 49 A 778 ILE ILE VAL GLU ARG ARG ASN THR LEU LEU ARG THR VAL SEQRES 50 A 778 THR ALA ARG GLU GLU LEU ALA GLU LEU ALA PRO LYS ARG SEQRES 51 A 778 TYR GLU GLU LEU SER ASP LYS VAL SER GLU GLU ARG LEU SEQRES 52 A 778 GLU THR ILE CYS ARG GLN ILE MSE LEU TYR HIS LEU ASP SEQRES 53 A 778 ARG GLY TRP ALA ASP HIS LEU ALA TYR LEU ALA ASP ILE SEQRES 54 A 778 ARG GLU SER ILE HIS LEU ARG ALA LEU GLY ARG GLN ASN SEQRES 55 A 778 PRO LEU ASP GLU PHE HIS ARG MSE ALA VAL ASP ALA PHE SEQRES 56 A 778 ALA SER LEU ALA ALA ASP ALA ILE GLU ALA ALA GLN GLN SEQRES 57 A 778 THR PHE GLU THR ALA ASN VAL LEU ASP HIS GLU PRO GLY SEQRES 58 A 778 LEU ASP LEU SER LYS LEU ALA ARG PRO THR SER THR TRP SEQRES 59 A 778 THR TYR MSE VAL ASN ASP ASN PRO LEU SER ASP ASP THR SEQRES 60 A 778 LEU SER ALA LEU SER LEU PRO GLY VAL PHE ARG MODRES 4UAQ MSE A 101 MET MODIFIED RESIDUE MODRES 4UAQ MSE A 109 MET MODIFIED RESIDUE MODRES 4UAQ MSE A 150 MET MODIFIED RESIDUE MODRES 4UAQ MSE A 157 MET MODIFIED RESIDUE MODRES 4UAQ MSE A 383 MET MODIFIED RESIDUE MODRES 4UAQ MSE A 499 MET MODIFIED RESIDUE MODRES 4UAQ MSE A 577 MET MODIFIED RESIDUE MODRES 4UAQ MSE A 671 MET MODIFIED RESIDUE MODRES 4UAQ MSE A 710 MET MODIFIED RESIDUE MODRES 4UAQ MSE A 757 MET MODIFIED RESIDUE HET MSE A 101 8 HET MSE A 109 8 HET MSE A 150 8 HET MSE A 157 8 HET MSE A 383 8 HET MSE A 499 5 HET MSE A 577 8 HET MSE A 671 8 HET MSE A 710 8 HET MSE A 757 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 HOH *67(H2 O) HELIX 1 AA1 ARG A 28 SER A 38 1 11 HELIX 2 AA2 TYR A 41 LEU A 48 1 8 HELIX 3 AA3 SER A 49 LEU A 59 1 11 HELIX 4 AA4 ASP A 70 ARG A 85 1 16 HELIX 5 AA5 PHE A 91 ALA A 103 1 13 HELIX 6 AA6 GLY A 114 ALA A 129 1 16 HELIX 7 AA7 ASN A 139 ALA A 156 1 18 HELIX 8 AA8 THR A 169 ARG A 179 1 11 HELIX 9 AA9 SER A 185 ASP A 196 1 12 HELIX 10 AB1 GLN A 197 VAL A 199 5 3 HELIX 11 AB2 ASP A 201 LEU A 205 5 5 HELIX 12 AB3 GLU A 217 ASP A 224 1 8 HELIX 13 AB4 ARG A 242 ASP A 255 1 14 HELIX 14 AB5 THR A 274 LEU A 285 1 12 HELIX 15 AB6 SER A 292 GLY A 297 1 6 HELIX 16 AB7 THR A 298 LEU A 312 1 15 HELIX 17 AB8 GLY A 345 ALA A 352 1 8 HELIX 18 AB9 VAL A 370 ASN A 375 1 6 HELIX 19 AC1 ALA A 387 ALA A 389 5 3 HELIX 20 AC2 ALA A 390 GLN A 399 1 10 HELIX 21 AC3 THR A 423 ARG A 441 1 19 HELIX 22 AC4 ASP A 451 GLY A 466 1 16 HELIX 23 AC5 ASN A 476 ALA A 485 1 10 HELIX 24 AC6 ASP A 515 LEU A 522 1 8 HELIX 25 AC7 THR A 535 ARG A 545 1 11 HELIX 26 AC8 ALA A 546 ASP A 551 5 6 HELIX 27 AC9 ASP A 571 LEU A 575 5 5 HELIX 28 AD1 THR A 590 LEU A 633 1 44 HELIX 29 AD2 VAL A 637 LEU A 643 1 7 HELIX 30 AD3 SER A 659 LEU A 695 1 37 HELIX 31 AD4 ARG A 696 LEU A 698 5 3 HELIX 32 AD5 ASP A 705 SER A 717 1 13 HELIX 33 AD6 LEU A 718 GLU A 731 1 14 SHEET 1 AA1 7 VAL A 161 ILE A 164 0 SHEET 2 AA1 7 VAL A 181 ALA A 184 1 O TYR A 183 N ILE A 164 SHEET 3 AA1 7 VAL A 133 VAL A 136 1 N VAL A 135 O THR A 182 SHEET 4 AA1 7 VAL A 212 ASP A 216 1 O ASP A 216 N VAL A 136 SHEET 5 AA1 7 THR A 379 THR A 384 1 O THR A 379 N ALA A 213 SHEET 6 AA1 7 VAL A 106 GLU A 108 1 N ILE A 107 O GLY A 382 SHEET 7 AA1 7 VAL A 402 PRO A 404 1 O SER A 403 N VAL A 106 SHEET 1 AA2 3 GLY A 362 THR A 369 0 SHEET 2 AA2 3 PRO A 229 THR A 235 -1 N LEU A 230 O ILE A 368 SHEET 3 AA2 3 THR A 753 MSE A 757 -1 O TYR A 756 N VAL A 231 SHEET 1 AA3 2 GLU A 260 TYR A 261 0 SHEET 2 AA3 2 HIS A 272 LEU A 273 -1 O HIS A 272 N TYR A 261 SHEET 1 AA4 3 ARG A 413 ASP A 415 0 SHEET 2 AA4 3 GLY A 553 SER A 560 1 O GLY A 553 N GLU A 414 SHEET 3 AA4 3 ARG A 419 TYR A 421 1 N ARG A 419 O PHE A 557 SHEET 1 AA5 5 ARG A 413 ASP A 415 0 SHEET 2 AA5 5 GLY A 553 SER A 560 1 O GLY A 553 N GLU A 414 SHEET 3 AA5 5 LEU A 525 GLY A 529 1 N GLY A 529 O VAL A 556 SHEET 4 AA5 5 VAL A 445 THR A 449 1 N LEU A 446 O HIS A 526 SHEET 5 AA5 5 VAL A 493 THR A 497 1 O THR A 494 N VAL A 445 LINK C ARG A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N LEU A 102 1555 1555 1.36 LINK C GLU A 108 N MSE A 109 1555 1555 1.35 LINK C MSE A 109 N ALA A 110 1555 1555 1.34 LINK C TRP A 149 N MSE A 150 1555 1555 1.34 LINK C MSE A 150 N GLY A 151 1555 1555 1.34 LINK C ALA A 156 N MSE A 157 1555 1555 1.34 LINK C MSE A 157 N GLY A 158 1555 1555 1.34 LINK C GLY A 382 N MSE A 383 1555 1555 1.34 LINK C MSE A 383 N THR A 384 1555 1555 1.34 LINK C GLN A 498 N MSE A 499 1555 1555 1.36 LINK C MSE A 499 N ALA A 500 1555 1555 1.34 LINK C PRO A 576 N MSE A 577 1555 1555 1.34 LINK C MSE A 577 N ALA A 578 1555 1555 1.35 LINK C ILE A 670 N MSE A 671 1555 1555 1.33 LINK C MSE A 671 N LEU A 672 1555 1555 1.36 LINK C ARG A 709 N MSE A 710 1555 1555 1.35 LINK C MSE A 710 N ALA A 711 1555 1555 1.35 LINK C TYR A 756 N MSE A 757 1555 1555 1.33 LINK C MSE A 757 N VAL A 758 1555 1555 1.34 CRYST1 39.600 162.090 67.310 90.00 95.87 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025253 0.000000 0.002596 0.00000 SCALE2 0.000000 0.006169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014935 0.00000