HEADER HYDROLASE 11-AUG-14 4UAT TITLE CRYSTAL STRUCTURE OF CBBY (MUTANT D10N) FROM RHODOBACTER SPHAEROIDES TITLE 2 IN COMPLEX WITH XYLULOSE-(1,5)BISPHOSPHATE, CRYSTAL FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CBBY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 1063; SOURCE 4 GENE: CBBY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHUE KEYWDS HALOACID DEHALOGENASE (HAD) HYDROLASE SUPERFAMILY, PHOSPHATASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BRACHER,A.SHARMA,A.STARLING-WINDHOF,F.U.HARTL,M.HAYER-HARTL REVDAT 4 20-DEC-23 4UAT 1 REMARK LINK REVDAT 3 15-JUN-16 4UAT 1 JRNL REVDAT 2 14-JAN-15 4UAT 1 AUTHOR REVDAT 1 31-DEC-14 4UAT 0 JRNL AUTH A.BRACHER,A.SHARMA,A.STARLING-WINDHOF,F.U.HARTL, JRNL AUTH 2 M.HAYER-HARTL JRNL TITL DEGRADATION OF POTENT RUBISCO INHIBITOR BY SELECTIVE SUGAR JRNL TITL 2 PHOSPHATASE. JRNL REF NAT.PLANTS V. 1 14002 2015 JRNL REFN ESSN 2055-0278 JRNL PMID 27246049 JRNL DOI 10.1038/NPLANTS.2014.2 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 107186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.121 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5342 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7131 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 388 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3466 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 651 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : -0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.042 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.569 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3779 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3652 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5141 ; 2.049 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8389 ; 0.955 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 483 ; 6.244 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;30.413 ;22.247 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 627 ;13.018 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;19.755 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 565 ; 0.249 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4326 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 870 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7431 ; 6.034 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 143 ;35.806 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7870 ;11.348 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4UAT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203100. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97639 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107256 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 121.776 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.83900 REMARK 200 R SYM FOR SHELL (I) : 0.83900 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 10.2.35 REMARK 200 STARTING MODEL: PDB ENTRY 4UAR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG-550MME, 0.1 M MES-NAOH PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.73400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 226 REMARK 465 ALA A 227 REMARK 465 PRO A 228 REMARK 465 VAL A 229 REMARK 465 ALA A 230 REMARK 465 THR B 226 REMARK 465 ALA B 227 REMARK 465 PRO B 228 REMARK 465 VAL B 229 REMARK 465 ALA B 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 135 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 179 O HOH B 401 1.88 REMARK 500 NH1 ARG B 43 O HOH B 549 1.92 REMARK 500 O HOH A 474 O HOH A 482 1.96 REMARK 500 NH1 ARG B 182 O HOH B 401 2.08 REMARK 500 O HOH B 592 O HOH B 665 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 40 CD GLU B 40 OE1 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 60 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 94 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 162 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 162 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 182 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 200 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 73 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG B 158 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 162 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG B 162 NE - CZ - NH1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG B 162 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 9 -72.30 -105.70 REMARK 500 VAL B 9 -73.36 -103.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 54 0.09 SIDE CHAIN REMARK 500 ARG B 54 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 674 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A 711 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B 696 DISTANCE = 6.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 ASN A 10 O 89.7 REMARK 620 3 ASP A 176 OD1 82.3 86.1 REMARK 620 4 XBP A 301 O2P 103.3 97.3 173.4 REMARK 620 5 HOH A 525 O 91.8 169.2 83.5 92.7 REMARK 620 6 HOH A 526 O 165.2 87.7 83.1 91.4 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 8 OD2 REMARK 620 2 ASN B 10 O 88.2 REMARK 620 3 ASP B 176 OD1 82.0 86.1 REMARK 620 4 XBP B 301 O1P 104.2 97.4 172.9 REMARK 620 5 HOH B 493 O 91.3 169.7 83.6 92.7 REMARK 620 6 HOH B 496 O 165.2 88.5 83.3 90.5 89.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XBP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XBP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 303 DBREF 4UAT A 1 230 UNP P95649 CBBY_RHOSH 1 230 DBREF 4UAT B 1 230 UNP P95649 CBBY_RHOSH 1 230 SEQADV 4UAT ASN A 10 UNP P95649 ASP 10 ENGINEERED MUTATION SEQADV 4UAT ASN B 10 UNP P95649 ASP 10 ENGINEERED MUTATION SEQRES 1 A 230 MET ILE GLU ALA ILE LEU PHE ASP VAL ASN GLY THR LEU SEQRES 2 A 230 ALA GLU THR GLU GLU LEU HIS ARG ARG ALA PHE ASN GLU SEQRES 3 A 230 THR PHE ALA ALA LEU GLY VAL ASP TRP PHE TRP ASP ARG SEQRES 4 A 230 GLU GLU TYR ARG GLU LEU LEU THR THR THR GLY GLY LYS SEQRES 5 A 230 GLU ARG ILE ALA ARG PHE LEU ARG HIS GLN LYS GLY ASP SEQRES 6 A 230 PRO ALA PRO LEU PRO ILE ALA ASP ILE HIS ARG ALA LYS SEQRES 7 A 230 THR GLU ARG PHE VAL ALA LEU MET ALA GLU GLY GLU ILE SEQRES 8 A 230 ALA LEU ARG PRO GLY ILE ALA ASP LEU ILE ALA GLU ALA SEQRES 9 A 230 LYS ARG ALA GLY ILE ARG LEU ALA VAL ALA THR THR THR SEQRES 10 A 230 SER LEU PRO ASN VAL GLU ALA LEU CYS ARG ALA CYS PHE SEQRES 11 A 230 GLY HIS PRO ALA ARG GLU ILE PHE ASP VAL ILE ALA ALA SEQRES 12 A 230 GLY ASP MET VAL ALA GLU LYS LYS PRO SER PRO ASP ILE SEQRES 13 A 230 TYR ARG LEU ALA LEU ARG GLU LEU ASP VAL PRO PRO GLU SEQRES 14 A 230 ARG ALA VAL ALA LEU GLU ASP SER LEU ASN GLY LEU ARG SEQRES 15 A 230 ALA ALA LYS GLY ALA GLY LEU ARG CYS ILE VAL SER PRO SEQRES 16 A 230 GLY PHE TYR THR ARG HIS GLU GLU PHE ALA GLY ALA ASP SEQRES 17 A 230 ARG LEU LEU ASP SER PHE ALA GLU LEU GLY GLY LEU ALA SEQRES 18 A 230 GLY LEU ASP LEU THR ALA PRO VAL ALA SEQRES 1 B 230 MET ILE GLU ALA ILE LEU PHE ASP VAL ASN GLY THR LEU SEQRES 2 B 230 ALA GLU THR GLU GLU LEU HIS ARG ARG ALA PHE ASN GLU SEQRES 3 B 230 THR PHE ALA ALA LEU GLY VAL ASP TRP PHE TRP ASP ARG SEQRES 4 B 230 GLU GLU TYR ARG GLU LEU LEU THR THR THR GLY GLY LYS SEQRES 5 B 230 GLU ARG ILE ALA ARG PHE LEU ARG HIS GLN LYS GLY ASP SEQRES 6 B 230 PRO ALA PRO LEU PRO ILE ALA ASP ILE HIS ARG ALA LYS SEQRES 7 B 230 THR GLU ARG PHE VAL ALA LEU MET ALA GLU GLY GLU ILE SEQRES 8 B 230 ALA LEU ARG PRO GLY ILE ALA ASP LEU ILE ALA GLU ALA SEQRES 9 B 230 LYS ARG ALA GLY ILE ARG LEU ALA VAL ALA THR THR THR SEQRES 10 B 230 SER LEU PRO ASN VAL GLU ALA LEU CYS ARG ALA CYS PHE SEQRES 11 B 230 GLY HIS PRO ALA ARG GLU ILE PHE ASP VAL ILE ALA ALA SEQRES 12 B 230 GLY ASP MET VAL ALA GLU LYS LYS PRO SER PRO ASP ILE SEQRES 13 B 230 TYR ARG LEU ALA LEU ARG GLU LEU ASP VAL PRO PRO GLU SEQRES 14 B 230 ARG ALA VAL ALA LEU GLU ASP SER LEU ASN GLY LEU ARG SEQRES 15 B 230 ALA ALA LYS GLY ALA GLY LEU ARG CYS ILE VAL SER PRO SEQRES 16 B 230 GLY PHE TYR THR ARG HIS GLU GLU PHE ALA GLY ALA ASP SEQRES 17 B 230 ARG LEU LEU ASP SER PHE ALA GLU LEU GLY GLY LEU ALA SEQRES 18 B 230 GLY LEU ASP LEU THR ALA PRO VAL ALA HET XBP A 301 18 HET MG A 302 1 HET MES A 303 12 HET XBP B 301 18 HET MG B 302 1 HET MES B 303 12 HETNAM XBP XYLULOSE-1,5-BISPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 XBP 2(C5 H12 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 MES 2(C6 H13 N O4 S) FORMUL 9 HOH *651(H2 O) HELIX 1 AA1 THR A 16 LEU A 31 1 16 HELIX 2 AA2 ASP A 38 LEU A 46 1 9 HELIX 3 AA3 GLY A 50 GLN A 62 1 13 HELIX 4 AA4 PRO A 70 ALA A 87 1 18 HELIX 5 AA5 GLY A 96 GLY A 108 1 13 HELIX 6 AA6 SER A 118 GLY A 131 1 14 HELIX 7 AA7 PRO A 133 PHE A 138 1 6 HELIX 8 AA8 ALA A 143 VAL A 147 5 5 HELIX 9 AA9 PRO A 154 ASP A 165 1 12 HELIX 10 AB1 PRO A 167 GLU A 169 5 3 HELIX 11 AB2 SER A 177 ALA A 187 1 11 HELIX 12 AB3 SER A 213 LEU A 217 5 5 HELIX 13 AB4 GLY A 219 ASP A 224 5 6 HELIX 14 AB5 THR B 16 GLY B 32 1 17 HELIX 15 AB6 ASP B 38 LEU B 46 1 9 HELIX 16 AB7 GLY B 50 ARG B 60 1 11 HELIX 17 AB8 PRO B 70 GLY B 89 1 20 HELIX 18 AB9 GLY B 96 ALA B 107 1 12 HELIX 19 AC1 SER B 118 GLY B 131 1 14 HELIX 20 AC2 PRO B 133 PHE B 138 1 6 HELIX 21 AC3 ALA B 143 VAL B 147 5 5 HELIX 22 AC4 PRO B 154 ASP B 165 1 12 HELIX 23 AC5 PRO B 167 GLU B 169 5 3 HELIX 24 AC6 SER B 177 ALA B 187 1 11 HELIX 25 AC7 SER B 213 ASP B 224 5 12 SHEET 1 AA1 6 VAL A 140 ALA A 142 0 SHEET 2 AA1 6 ARG A 110 ALA A 114 1 N VAL A 113 O ALA A 142 SHEET 3 AA1 6 ALA A 4 PHE A 7 1 N PHE A 7 O ALA A 112 SHEET 4 AA1 6 ALA A 171 GLU A 175 1 O VAL A 172 N LEU A 6 SHEET 5 AA1 6 ARG A 190 VAL A 193 1 O ILE A 192 N ALA A 173 SHEET 6 AA1 6 ARG A 209 LEU A 210 1 O ARG A 209 N VAL A 193 SHEET 1 AA2 6 VAL B 140 ALA B 142 0 SHEET 2 AA2 6 ARG B 110 ALA B 114 1 N VAL B 113 O ALA B 142 SHEET 3 AA2 6 ALA B 4 PHE B 7 1 N PHE B 7 O ALA B 112 SHEET 4 AA2 6 ALA B 171 GLU B 175 1 O VAL B 172 N LEU B 6 SHEET 5 AA2 6 ARG B 190 VAL B 193 1 O ILE B 192 N ALA B 173 SHEET 6 AA2 6 ARG B 209 LEU B 210 1 O ARG B 209 N VAL B 193 LINK OD2 ASP A 8 MG MG A 302 1555 1555 2.00 LINK O ASN A 10 MG MG A 302 1555 1555 2.11 LINK OD1 ASP A 176 MG MG A 302 1555 1555 2.13 LINK O2P XBP A 301 MG MG A 302 1555 1555 2.00 LINK MG MG A 302 O HOH A 525 1555 1555 2.13 LINK MG MG A 302 O HOH A 526 1555 1555 2.13 LINK OD2 ASP B 8 MG MG B 302 1555 1555 2.03 LINK O ASN B 10 MG MG B 302 1555 1555 2.12 LINK OD1 ASP B 176 MG MG B 302 1555 1555 2.13 LINK O1P XBP B 301 MG MG B 302 1555 1555 2.01 LINK MG MG B 302 O HOH B 493 1555 1555 2.14 LINK MG MG B 302 O HOH B 496 1555 1555 2.12 CISPEP 1 LYS A 151 PRO A 152 0 19.83 CISPEP 2 LYS B 151 PRO B 152 0 19.65 SITE 1 AC1 24 ASP A 8 VAL A 9 ASN A 10 GLU A 17 SITE 2 AC1 24 HIS A 20 THR A 49 GLY A 50 GLY A 51 SITE 3 AC1 24 ARG A 54 HIS A 75 LYS A 78 THR A 115 SITE 4 AC1 24 THR A 116 THR A 117 SER A 118 ASN A 121 SITE 5 AC1 24 LYS A 151 MG A 302 HOH A 523 HOH A 525 SITE 6 AC1 24 HOH A 526 HOH A 527 HOH A 533 HOH A 562 SITE 1 AC2 6 ASP A 8 ASN A 10 ASP A 176 XBP A 301 SITE 2 AC2 6 HOH A 525 HOH A 526 SITE 1 AC3 7 ARG A 21 ARG A 22 ASN A 25 PHE A 36 SITE 2 AC3 7 HOH A 551 HOH A 712 HOH A 729 SITE 1 AC4 24 ASP B 8 VAL B 9 ASN B 10 GLU B 17 SITE 2 AC4 24 HIS B 20 THR B 49 GLY B 50 GLY B 51 SITE 3 AC4 24 ARG B 54 HIS B 75 LYS B 78 THR B 115 SITE 4 AC4 24 THR B 116 THR B 117 SER B 118 ASN B 121 SITE 5 AC4 24 LYS B 151 MG B 302 HOH B 493 HOH B 495 SITE 6 AC4 24 HOH B 496 HOH B 498 HOH B 509 HOH B 673 SITE 1 AC5 6 ASP B 8 ASN B 10 ASP B 176 XBP B 301 SITE 2 AC5 6 HOH B 493 HOH B 496 SITE 1 AC6 6 ARG B 21 ARG B 22 ASN B 25 PHE B 36 SITE 2 AC6 6 HOH B 403 HOH B 532 CRYST1 35.419 51.468 122.083 90.00 94.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028233 0.000000 0.002004 0.00000 SCALE2 0.000000 0.019430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008212 0.00000