HEADER HYDROLASE 11-AUG-14 4UAU TITLE CRYSTAL STRUCTURE OF CBBY (MUTANT D10N) FROM RHODOBACTER SPHAEROIDES TITLE 2 IN COMPLEX WITH XYLULOSE-(1,5)BISPHOSPHATE, CRYSTAL FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CBBY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 1063; SOURCE 4 GENE: CBBY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHUE KEYWDS HALOACID DEHALOGENASE (HAD) HYDROLASE SUPERFAMILY, PHOSPHATASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BRACHER,A.SHARMA,A.STARLING-WINDHOF,F.U.HARTL,M.HAYER-HARTL REVDAT 4 20-DEC-23 4UAU 1 REMARK LINK REVDAT 3 15-JUN-16 4UAU 1 JRNL REVDAT 2 14-JAN-15 4UAU 1 AUTHOR REVDAT 1 31-DEC-14 4UAU 0 JRNL AUTH A.BRACHER,A.SHARMA,A.STARLING-WINDHOF,F.U.HARTL, JRNL AUTH 2 M.HAYER-HARTL JRNL TITL DEGRADATION OF POTENT RUBISCO INHIBITOR BY SELECTIVE SUGAR JRNL TITL 2 PHOSPHATASE. JRNL REF NAT.PLANTS V. 1 14002 2015 JRNL REFN ESSN 2055-0278 JRNL PMID 27246049 JRNL DOI 10.1038/NPLANTS.2014.2 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 80090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4075 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5063 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 247 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3475 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.280 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3709 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5037 ; 1.403 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 470 ; 5.861 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;31.175 ;22.118 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 611 ;12.540 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;16.678 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 558 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2844 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2304 ; 0.784 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3678 ; 1.417 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1405 ; 2.229 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1359 ; 3.672 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4UAU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97639 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, HKL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80244 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 46.715 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : 0.71000 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 10.2.35 REMARK 200 STARTING MODEL: PDB ENTRY 4UAR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG-1000, 0.1 M MES-NAOH PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.64400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.89650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.88350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.89650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.64400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.88350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 227 REMARK 465 PRO A 228 REMARK 465 VAL A 229 REMARK 465 ALA A 230 REMARK 465 THR B 226 REMARK 465 ALA B 227 REMARK 465 PRO B 228 REMARK 465 VAL B 229 REMARK 465 ALA B 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 GLU B 203 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 200 O HOH B 401 1.95 REMARK 500 OE2 GLU A 15 O HOH A 589 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 420 O HOH B 401 4466 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 9 -69.72 -105.83 REMARK 500 PHE A 204 44.81 -109.65 REMARK 500 VAL B 9 -70.12 -105.55 REMARK 500 PHE B 204 52.36 -117.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 ASN A 10 O 89.5 REMARK 620 3 ASP A 176 OD1 82.5 86.1 REMARK 620 4 XBP A 301 O2P 102.9 95.5 174.3 REMARK 620 5 HOH A 510 O 92.1 170.6 85.0 93.1 REMARK 620 6 HOH A 511 O 166.6 87.0 84.3 90.3 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 8 OD2 REMARK 620 2 ASN B 10 O 90.8 REMARK 620 3 ASP B 176 OD1 82.0 84.6 REMARK 620 4 XBP B 301 O2P 104.4 95.9 173.6 REMARK 620 5 HOH B 496 O 90.6 170.9 86.6 92.4 REMARK 620 6 HOH B 497 O 166.0 87.3 84.0 89.6 89.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XBP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XBP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 303 DBREF 4UAU A 1 230 UNP P95649 CBBY_RHOSH 1 230 DBREF 4UAU B 1 230 UNP P95649 CBBY_RHOSH 1 230 SEQADV 4UAU ASN A 10 UNP P95649 ASP 10 ENGINEERED MUTATION SEQADV 4UAU ASN B 10 UNP P95649 ASP 10 ENGINEERED MUTATION SEQRES 1 A 230 MET ILE GLU ALA ILE LEU PHE ASP VAL ASN GLY THR LEU SEQRES 2 A 230 ALA GLU THR GLU GLU LEU HIS ARG ARG ALA PHE ASN GLU SEQRES 3 A 230 THR PHE ALA ALA LEU GLY VAL ASP TRP PHE TRP ASP ARG SEQRES 4 A 230 GLU GLU TYR ARG GLU LEU LEU THR THR THR GLY GLY LYS SEQRES 5 A 230 GLU ARG ILE ALA ARG PHE LEU ARG HIS GLN LYS GLY ASP SEQRES 6 A 230 PRO ALA PRO LEU PRO ILE ALA ASP ILE HIS ARG ALA LYS SEQRES 7 A 230 THR GLU ARG PHE VAL ALA LEU MET ALA GLU GLY GLU ILE SEQRES 8 A 230 ALA LEU ARG PRO GLY ILE ALA ASP LEU ILE ALA GLU ALA SEQRES 9 A 230 LYS ARG ALA GLY ILE ARG LEU ALA VAL ALA THR THR THR SEQRES 10 A 230 SER LEU PRO ASN VAL GLU ALA LEU CYS ARG ALA CYS PHE SEQRES 11 A 230 GLY HIS PRO ALA ARG GLU ILE PHE ASP VAL ILE ALA ALA SEQRES 12 A 230 GLY ASP MET VAL ALA GLU LYS LYS PRO SER PRO ASP ILE SEQRES 13 A 230 TYR ARG LEU ALA LEU ARG GLU LEU ASP VAL PRO PRO GLU SEQRES 14 A 230 ARG ALA VAL ALA LEU GLU ASP SER LEU ASN GLY LEU ARG SEQRES 15 A 230 ALA ALA LYS GLY ALA GLY LEU ARG CYS ILE VAL SER PRO SEQRES 16 A 230 GLY PHE TYR THR ARG HIS GLU GLU PHE ALA GLY ALA ASP SEQRES 17 A 230 ARG LEU LEU ASP SER PHE ALA GLU LEU GLY GLY LEU ALA SEQRES 18 A 230 GLY LEU ASP LEU THR ALA PRO VAL ALA SEQRES 1 B 230 MET ILE GLU ALA ILE LEU PHE ASP VAL ASN GLY THR LEU SEQRES 2 B 230 ALA GLU THR GLU GLU LEU HIS ARG ARG ALA PHE ASN GLU SEQRES 3 B 230 THR PHE ALA ALA LEU GLY VAL ASP TRP PHE TRP ASP ARG SEQRES 4 B 230 GLU GLU TYR ARG GLU LEU LEU THR THR THR GLY GLY LYS SEQRES 5 B 230 GLU ARG ILE ALA ARG PHE LEU ARG HIS GLN LYS GLY ASP SEQRES 6 B 230 PRO ALA PRO LEU PRO ILE ALA ASP ILE HIS ARG ALA LYS SEQRES 7 B 230 THR GLU ARG PHE VAL ALA LEU MET ALA GLU GLY GLU ILE SEQRES 8 B 230 ALA LEU ARG PRO GLY ILE ALA ASP LEU ILE ALA GLU ALA SEQRES 9 B 230 LYS ARG ALA GLY ILE ARG LEU ALA VAL ALA THR THR THR SEQRES 10 B 230 SER LEU PRO ASN VAL GLU ALA LEU CYS ARG ALA CYS PHE SEQRES 11 B 230 GLY HIS PRO ALA ARG GLU ILE PHE ASP VAL ILE ALA ALA SEQRES 12 B 230 GLY ASP MET VAL ALA GLU LYS LYS PRO SER PRO ASP ILE SEQRES 13 B 230 TYR ARG LEU ALA LEU ARG GLU LEU ASP VAL PRO PRO GLU SEQRES 14 B 230 ARG ALA VAL ALA LEU GLU ASP SER LEU ASN GLY LEU ARG SEQRES 15 B 230 ALA ALA LYS GLY ALA GLY LEU ARG CYS ILE VAL SER PRO SEQRES 16 B 230 GLY PHE TYR THR ARG HIS GLU GLU PHE ALA GLY ALA ASP SEQRES 17 B 230 ARG LEU LEU ASP SER PHE ALA GLU LEU GLY GLY LEU ALA SEQRES 18 B 230 GLY LEU ASP LEU THR ALA PRO VAL ALA HET XBP A 301 18 HET MG A 302 1 HET MES A 303 12 HET XBP B 301 18 HET MG B 302 1 HET MES B 303 12 HETNAM XBP XYLULOSE-1,5-BISPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 XBP 2(C5 H12 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 MES 2(C6 H13 N O4 S) FORMUL 9 HOH *590(H2 O) HELIX 1 AA1 THR A 16 LEU A 31 1 16 HELIX 2 AA2 ASP A 38 LEU A 46 1 9 HELIX 3 AA3 GLY A 50 GLN A 62 1 13 HELIX 4 AA4 PRO A 70 GLU A 88 1 19 HELIX 5 AA5 GLY A 96 ALA A 107 1 12 HELIX 6 AA6 SER A 118 GLY A 131 1 14 HELIX 7 AA7 PRO A 133 PHE A 138 1 6 HELIX 8 AA8 ALA A 143 VAL A 147 5 5 HELIX 9 AA9 PRO A 154 ASP A 165 1 12 HELIX 10 AB1 PRO A 167 GLU A 169 5 3 HELIX 11 AB2 SER A 177 ALA A 187 1 11 HELIX 12 AB3 SER A 213 ASP A 224 5 12 HELIX 13 AB4 THR B 16 LEU B 31 1 16 HELIX 14 AB5 ASP B 38 LEU B 46 1 9 HELIX 15 AB6 GLY B 50 GLN B 62 1 13 HELIX 16 AB7 PRO B 70 GLY B 89 1 20 HELIX 17 AB8 GLY B 96 GLY B 108 1 13 HELIX 18 AB9 SER B 118 PHE B 130 1 13 HELIX 19 AC1 PRO B 133 PHE B 138 1 6 HELIX 20 AC2 ALA B 143 VAL B 147 5 5 HELIX 21 AC3 PRO B 154 ASP B 165 1 12 HELIX 22 AC4 PRO B 167 GLU B 169 5 3 HELIX 23 AC5 SER B 177 ALA B 187 1 11 HELIX 24 AC6 SER B 213 LEU B 217 5 5 HELIX 25 AC7 GLY B 219 ASP B 224 5 6 SHEET 1 AA1 6 VAL A 140 ALA A 142 0 SHEET 2 AA1 6 ARG A 110 ALA A 114 1 N VAL A 113 O ALA A 142 SHEET 3 AA1 6 ALA A 4 PHE A 7 1 N PHE A 7 O ALA A 112 SHEET 4 AA1 6 ALA A 171 GLU A 175 1 O VAL A 172 N LEU A 6 SHEET 5 AA1 6 ARG A 190 VAL A 193 1 O ILE A 192 N ALA A 173 SHEET 6 AA1 6 ARG A 209 LEU A 210 1 O ARG A 209 N VAL A 193 SHEET 1 AA2 6 VAL B 140 ALA B 142 0 SHEET 2 AA2 6 ARG B 110 ALA B 114 1 N VAL B 113 O ALA B 142 SHEET 3 AA2 6 ALA B 4 PHE B 7 1 N PHE B 7 O ALA B 112 SHEET 4 AA2 6 ALA B 171 GLU B 175 1 O VAL B 172 N LEU B 6 SHEET 5 AA2 6 ARG B 190 VAL B 193 1 O ILE B 192 N ALA B 173 SHEET 6 AA2 6 ARG B 209 LEU B 210 1 O ARG B 209 N VAL B 193 LINK OD2 ASP A 8 MG MG A 302 1555 1555 2.02 LINK O ASN A 10 MG MG A 302 1555 1555 2.20 LINK OD1 ASP A 176 MG MG A 302 1555 1555 2.07 LINK O2P XBP A 301 MG MG A 302 1555 1555 1.94 LINK MG MG A 302 O HOH A 510 1555 1555 2.13 LINK MG MG A 302 O HOH A 511 1555 1555 2.18 LINK OD2 ASP B 8 MG MG B 302 1555 1555 1.98 LINK O ASN B 10 MG MG B 302 1555 1555 2.21 LINK OD1 ASP B 176 MG MG B 302 1555 1555 2.05 LINK O2P XBP B 301 MG MG B 302 1555 1555 1.96 LINK MG MG B 302 O HOH B 496 1555 1555 2.11 LINK MG MG B 302 O HOH B 497 1555 1555 2.15 CISPEP 1 LYS A 151 PRO A 152 0 16.29 CISPEP 2 LYS B 151 PRO B 152 0 16.34 SITE 1 AC1 24 ASP A 8 VAL A 9 ASN A 10 GLU A 17 SITE 2 AC1 24 HIS A 20 THR A 49 GLY A 50 GLY A 51 SITE 3 AC1 24 ARG A 54 HIS A 75 LYS A 78 THR A 115 SITE 4 AC1 24 THR A 116 THR A 117 SER A 118 ASN A 121 SITE 5 AC1 24 LYS A 151 MG A 302 HOH A 510 HOH A 511 SITE 6 AC1 24 HOH A 512 HOH A 520 HOH A 543 HOH A 544 SITE 1 AC2 6 ASP A 8 ASN A 10 ASP A 176 XBP A 301 SITE 2 AC2 6 HOH A 510 HOH A 511 SITE 1 AC3 9 ARG A 21 ARG A 22 ASN A 25 PHE A 36 SITE 2 AC3 9 HOH A 408 HOH A 415 HOH A 631 LEU B 210 SITE 3 AC3 9 ASP B 212 SITE 1 AC4 23 ASP B 8 VAL B 9 ASN B 10 GLU B 17 SITE 2 AC4 23 HIS B 20 THR B 49 GLY B 50 GLY B 51 SITE 3 AC4 23 ARG B 54 HIS B 75 LYS B 78 THR B 115 SITE 4 AC4 23 THR B 116 THR B 117 SER B 118 ASN B 121 SITE 5 AC4 23 LYS B 151 MG B 302 HOH B 496 HOH B 497 SITE 6 AC4 23 HOH B 499 HOH B 503 HOH B 543 SITE 1 AC5 6 ASP B 8 ASN B 10 ASP B 176 XBP B 301 SITE 2 AC5 6 HOH B 496 HOH B 497 SITE 1 AC6 9 LEU A 210 ASP A 212 ARG B 21 ARG B 22 SITE 2 AC6 9 ASN B 25 PHE B 36 HOH B 407 HOH B 516 SITE 3 AC6 9 HOH B 648 CRYST1 51.288 69.767 125.793 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019498 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014333 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007950 0.00000