data_4UB5 # _entry.id 4UB5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4UB5 pdb_00004ub5 10.2210/pdb4ub5/pdb WWPDB D_1000203118 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 4UAW unspecified PDB . 4UAY unspecified PDB . 4UAZ unspecified PDB . 4UB1 unspecified PDB . 4UB2 unspecified PDB . 4UB3 unspecified PDB . 4UB4 unspecified PDB . 4UBB unspecified PDB . 4UBC unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4UB5 _pdbx_database_status.recvd_initial_deposition_date 2014-08-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Freudenthal, B.D.' 1 ? 'Wilson, S.H.' 2 ? 'Beard, W.A.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 517 _citation.language ? _citation.page_first 635 _citation.page_last 639 _citation.title 'Uncovering the polymerase-induced cytotoxicity of an oxidized nucleotide.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nature13886 _citation.pdbx_database_id_PubMed 25409153 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Freudenthal, B.D.' 1 ? primary 'Beard, W.A.' 2 ? primary 'Perera, L.' 3 ? primary 'Shock, D.D.' 4 ? primary 'Kim, T.' 5 ? primary 'Schlick, T.' 6 ? primary 'Wilson, S.H.' 7 ? # _cell.entry_id 4UB5 _cell.length_a 55.066 _cell.length_b 77.713 _cell.length_c 55.112 _cell.angle_alpha 90.00 _cell.angle_beta 114.24 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'" 4829.133 1 ? ? ? ? 2 polymer syn "5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'" 3061.004 1 ? ? ? ? 3 polymer syn "5'-D(P*GP*TP*CP*GP*G)-3'" 1536.035 1 ? ? ? ? 4 polymer man 'DNA polymerase beta' 38241.672 1 2.7.7.7,4.2.99.- ? ? ? 5 non-polymer syn 'MANGANESE (II) ION' 54.938 5 ? ? ? ? 6 non-polymer syn "8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" 523.180 1 ? ? ? ? 7 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 8 water nat water 18.015 109 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DA)(DC)(DC)(DG)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC)' CCGACCGCGCATCAGC T ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DC)' GCTGATGCGC P ? 3 polydeoxyribonucleotide no no '(DG)(DT)(DC)(DG)(DG)' GTCGG D ? 4 'polypeptide(L)' no no ;MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE ; ;MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DA n 1 5 DC n 1 6 DC n 1 7 DG n 1 8 DC n 1 9 DG n 1 10 DC n 1 11 DA n 1 12 DT n 1 13 DC n 1 14 DA n 1 15 DG n 1 16 DC n 2 1 DG n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DG n 2 8 DC n 2 9 DG n 2 10 DC n 3 1 DG n 3 2 DT n 3 3 DC n 3 4 DG n 3 5 DG n 4 1 MET n 4 2 SER n 4 3 LYS n 4 4 ARG n 4 5 LYS n 4 6 ALA n 4 7 PRO n 4 8 GLN n 4 9 GLU n 4 10 THR n 4 11 LEU n 4 12 ASN n 4 13 GLY n 4 14 GLY n 4 15 ILE n 4 16 THR n 4 17 ASP n 4 18 MET n 4 19 LEU n 4 20 THR n 4 21 GLU n 4 22 LEU n 4 23 ALA n 4 24 ASN n 4 25 PHE n 4 26 GLU n 4 27 LYS n 4 28 ASN n 4 29 VAL n 4 30 SER n 4 31 GLN n 4 32 ALA n 4 33 ILE n 4 34 HIS n 4 35 LYS n 4 36 TYR n 4 37 ASN n 4 38 ALA n 4 39 TYR n 4 40 ARG n 4 41 LYS n 4 42 ALA n 4 43 ALA n 4 44 SER n 4 45 VAL n 4 46 ILE n 4 47 ALA n 4 48 LYS n 4 49 TYR n 4 50 PRO n 4 51 HIS n 4 52 LYS n 4 53 ILE n 4 54 LYS n 4 55 SER n 4 56 GLY n 4 57 ALA n 4 58 GLU n 4 59 ALA n 4 60 LYS n 4 61 LYS n 4 62 LEU n 4 63 PRO n 4 64 GLY n 4 65 VAL n 4 66 GLY n 4 67 THR n 4 68 LYS n 4 69 ILE n 4 70 ALA n 4 71 GLU n 4 72 LYS n 4 73 ILE n 4 74 ASP n 4 75 GLU n 4 76 PHE n 4 77 LEU n 4 78 ALA n 4 79 THR n 4 80 GLY n 4 81 LYS n 4 82 LEU n 4 83 ARG n 4 84 LYS n 4 85 LEU n 4 86 GLU n 4 87 LYS n 4 88 ILE n 4 89 ARG n 4 90 GLN n 4 91 ASP n 4 92 ASP n 4 93 THR n 4 94 SER n 4 95 SER n 4 96 SER n 4 97 ILE n 4 98 ASN n 4 99 PHE n 4 100 LEU n 4 101 THR n 4 102 ARG n 4 103 VAL n 4 104 SER n 4 105 GLY n 4 106 ILE n 4 107 GLY n 4 108 PRO n 4 109 SER n 4 110 ALA n 4 111 ALA n 4 112 ARG n 4 113 LYS n 4 114 PHE n 4 115 VAL n 4 116 ASP n 4 117 GLU n 4 118 GLY n 4 119 ILE n 4 120 LYS n 4 121 THR n 4 122 LEU n 4 123 GLU n 4 124 ASP n 4 125 LEU n 4 126 ARG n 4 127 LYS n 4 128 ASN n 4 129 GLU n 4 130 ASP n 4 131 LYS n 4 132 LEU n 4 133 ASN n 4 134 HIS n 4 135 HIS n 4 136 GLN n 4 137 ARG n 4 138 ILE n 4 139 GLY n 4 140 LEU n 4 141 LYS n 4 142 TYR n 4 143 PHE n 4 144 GLY n 4 145 ASP n 4 146 PHE n 4 147 GLU n 4 148 LYS n 4 149 ARG n 4 150 ILE n 4 151 PRO n 4 152 ARG n 4 153 GLU n 4 154 GLU n 4 155 MET n 4 156 LEU n 4 157 GLN n 4 158 MET n 4 159 GLN n 4 160 ASP n 4 161 ILE n 4 162 VAL n 4 163 LEU n 4 164 ASN n 4 165 GLU n 4 166 VAL n 4 167 LYS n 4 168 LYS n 4 169 VAL n 4 170 ASP n 4 171 SER n 4 172 GLU n 4 173 TYR n 4 174 ILE n 4 175 ALA n 4 176 THR n 4 177 VAL n 4 178 CYS n 4 179 GLY n 4 180 SER n 4 181 PHE n 4 182 ARG n 4 183 ARG n 4 184 GLY n 4 185 ALA n 4 186 GLU n 4 187 SER n 4 188 SER n 4 189 GLY n 4 190 ASP n 4 191 MET n 4 192 ASP n 4 193 VAL n 4 194 LEU n 4 195 LEU n 4 196 THR n 4 197 HIS n 4 198 PRO n 4 199 SER n 4 200 PHE n 4 201 THR n 4 202 SER n 4 203 GLU n 4 204 SER n 4 205 THR n 4 206 LYS n 4 207 GLN n 4 208 PRO n 4 209 LYS n 4 210 LEU n 4 211 LEU n 4 212 HIS n 4 213 GLN n 4 214 VAL n 4 215 VAL n 4 216 GLU n 4 217 GLN n 4 218 LEU n 4 219 GLN n 4 220 LYS n 4 221 VAL n 4 222 HIS n 4 223 PHE n 4 224 ILE n 4 225 THR n 4 226 ASP n 4 227 THR n 4 228 LEU n 4 229 SER n 4 230 LYS n 4 231 GLY n 4 232 GLU n 4 233 THR n 4 234 LYS n 4 235 PHE n 4 236 MET n 4 237 GLY n 4 238 VAL n 4 239 CYS n 4 240 GLN n 4 241 LEU n 4 242 PRO n 4 243 SER n 4 244 LYS n 4 245 ASN n 4 246 ASP n 4 247 GLU n 4 248 LYS n 4 249 GLU n 4 250 TYR n 4 251 PRO n 4 252 HIS n 4 253 ARG n 4 254 ARG n 4 255 ILE n 4 256 ASP n 4 257 ILE n 4 258 ARG n 4 259 LEU n 4 260 ILE n 4 261 PRO n 4 262 LYS n 4 263 ASP n 4 264 GLN n 4 265 TYR n 4 266 TYR n 4 267 CYS n 4 268 GLY n 4 269 VAL n 4 270 LEU n 4 271 TYR n 4 272 PHE n 4 273 THR n 4 274 GLY n 4 275 SER n 4 276 ASP n 4 277 ILE n 4 278 PHE n 4 279 ASN n 4 280 LYS n 4 281 ASN n 4 282 MET n 4 283 ARG n 4 284 ALA n 4 285 HIS n 4 286 ALA n 4 287 LEU n 4 288 GLU n 4 289 LYS n 4 290 GLY n 4 291 PHE n 4 292 THR n 4 293 ILE n 4 294 ASN n 4 295 GLU n 4 296 TYR n 4 297 THR n 4 298 ILE n 4 299 ARG n 4 300 PRO n 4 301 LEU n 4 302 GLY n 4 303 VAL n 4 304 THR n 4 305 GLY n 4 306 VAL n 4 307 ALA n 4 308 GLY n 4 309 GLU n 4 310 PRO n 4 311 LEU n 4 312 PRO n 4 313 VAL n 4 314 ASP n 4 315 SER n 4 316 GLU n 4 317 LYS n 4 318 ASP n 4 319 ILE n 4 320 PHE n 4 321 ASP n 4 322 TYR n 4 323 ILE n 4 324 GLN n 4 325 TRP n 4 326 LYS n 4 327 TYR n 4 328 ARG n 4 329 GLU n 4 330 PRO n 4 331 LYS n 4 332 ASP n 4 333 ARG n 4 334 SER n 4 335 GLU n # _entity_src_gen.entity_id 4 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 335 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene POLB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Tap56 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pWL11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 16 'synthetic construct' ? 32630 ? 2 1 sample 1 10 'synthetic construct' ? 32630 ? 3 1 sample 1 5 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 4UB5 4UB5 ? 1 ? 1 2 PDB 4UB5 4UB5 ? 2 ? 1 3 PDB 4UB5 4UB5 ? 3 ? 1 4 UNP DPOLB_HUMAN P06746 ? 4 ;MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE ; 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4UB5 T 1 ? 16 ? 4UB5 1 ? 16 ? 1 16 2 2 4UB5 P 1 ? 10 ? 4UB5 1 ? 10 ? 1 10 3 3 4UB5 D 1 ? 5 ? 4UB5 1 ? 5 ? 1 5 4 4 4UB5 A 1 ? 335 ? P06746 1 ? 335 ? 1 335 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8DG non-polymer . "8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4UB5 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '50 mM imidazole, 350 mM sodium chloride, 17% PEG3350, pH 8.0' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 92' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-10-28 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4UB5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.15 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 39111 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.2 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.23 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.516 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -2.5888 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 3.5434 _refine.aniso_B[2][2] 3.0813 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -0.4925 _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4UB5 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.15 _refine.ls_d_res_low 21.087 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 39111 _refine.ls_number_reflns_R_free 3403 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 86.17 _refine.ls_percent_reflns_R_free 8.70 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2319 _refine.ls_R_factor_R_free 0.2895 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2264 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol 39.501 _refine.solvent_model_param_ksol 0.367 _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 2FMS' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.50 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.42 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2466 _refine_hist.pdbx_number_atoms_nucleic_acid 629 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 109 _refine_hist.number_atoms_total 3243 _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 21.087 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.014 ? 3334 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.926 ? 4662 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 20.344 ? 1290 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.057 ? 505 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 481 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error 'X-RAY DIFFRACTION' 2.15 2.1791 . . 114 1204 70.00 . . . 0.4107 . 0.3434 . . . . . . . . 'X-RAY DIFFRACTION' 2.1791 2.2116 . . 133 1378 77.00 . . . 0.3452 . 0.3295 . . . . . . . . 'X-RAY DIFFRACTION' 2.2116 2.2461 . . 135 1407 85.00 . . . 0.3495 . 0.2963 . . . . . . . . 'X-RAY DIFFRACTION' 2.2461 2.2829 . . 143 1521 84.00 . . . 0.3962 . 0.2947 . . . . . . . . 'X-RAY DIFFRACTION' 2.2829 2.3222 . . 115 1290 76.00 . . . 0.4350 . 0.3214 . . . . . . . . 'X-RAY DIFFRACTION' 2.3222 2.3644 . . 144 1399 82.00 . . . 0.3527 . 0.2908 . . . . . . . . 'X-RAY DIFFRACTION' 2.3644 2.4098 . . 138 1411 82.00 . . . 0.3155 . 0.2829 . . . . . . . . 'X-RAY DIFFRACTION' 2.4098 2.4589 . . 133 1380 79.00 . . . 0.3574 . 0.2921 . . . . . . . . 'X-RAY DIFFRACTION' 2.4589 2.5123 . . 125 1360 78.00 . . . 0.3566 . 0.3042 . . . . . . . . 'X-RAY DIFFRACTION' 2.5123 2.5706 . . 128 1411 82.00 . . . 0.3885 . 0.2973 . . . . . . . . 'X-RAY DIFFRACTION' 2.5706 2.6348 . . 136 1370 80.00 . . . 0.3861 . 0.3096 . . . . . . . . 'X-RAY DIFFRACTION' 2.6348 2.7059 . . 134 1375 80.00 . . . 0.3641 . 0.3170 . . . . . . . . 'X-RAY DIFFRACTION' 2.7059 2.7853 . . 127 1414 82.00 . . . 0.4510 . 0.3103 . . . . . . . . 'X-RAY DIFFRACTION' 2.7853 2.8750 . . 130 1426 82.00 . . . 0.3783 . 0.2708 . . . . . . . . 'X-RAY DIFFRACTION' 2.8750 2.9775 . . 140 1459 84.00 . . . 0.3464 . 0.2507 . . . . . . . . 'X-RAY DIFFRACTION' 2.9775 3.0964 . . 144 1519 88.00 . . . 0.3248 . 0.2594 . . . . . . . . 'X-RAY DIFFRACTION' 3.0964 3.2368 . . 155 1677 96.00 . . . 0.2970 . 0.2371 . . . . . . . . 'X-RAY DIFFRACTION' 3.2368 3.4068 . . 153 1683 99.00 . . . 0.2891 . 0.2377 . . . . . . . . 'X-RAY DIFFRACTION' 3.4068 3.6192 . . 168 1715 99.00 . . . 0.2904 . 0.2081 . . . . . . . . 'X-RAY DIFFRACTION' 3.6192 3.8971 . . 156 1681 97.00 . . . 0.2704 . 0.1824 . . . . . . . . 'X-RAY DIFFRACTION' 3.8971 4.2863 . . 160 1645 95.00 . . . 0.2126 . 0.1637 . . . . . . . . 'X-RAY DIFFRACTION' 4.2863 4.8997 . . 160 1629 94.00 . . . 0.1933 . 0.1578 . . . . . . . . 'X-RAY DIFFRACTION' 4.8997 6.1477 . . 162 1684 97.00 . . . 0.2831 . 0.1900 . . . . . . . . 'X-RAY DIFFRACTION' 6.1477 21.0880 . . 170 1670 98.00 . . . 0.2241 . 0.1985 . . . . . . . . # _struct.entry_id 4UB5 _struct.title 'DNA polymerase beta substrate complex with a templating cytosine, incoming 8-oxodGTP, and Mn2+, 5 s' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4UB5 _struct_keywords.text 'DNA polymerase, TRANSFERASE, LYASE-DNA complex' _struct_keywords.pdbx_keywords 'TRANSFERASE, LYASE/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 6 ? K N N 7 ? L N N 7 ? M N N 8 ? N N N 8 ? O N N 8 ? P N N 8 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN D 12 ? VAL D 29 ? ASN A 12 VAL A 29 1 ? 18 HELX_P HELX_P2 AA2 ALA D 32 ? LYS D 48 ? ALA A 32 LYS A 48 1 ? 17 HELX_P HELX_P3 AA3 SER D 55 ? LYS D 61 ? SER A 55 LYS A 61 1 ? 7 HELX_P HELX_P4 AA4 GLY D 66 ? GLY D 80 ? GLY A 66 GLY A 80 1 ? 15 HELX_P HELX_P5 AA5 LEU D 82 ? ASP D 91 ? LEU A 82 ASP A 91 1 ? 10 HELX_P HELX_P6 AA6 ASP D 91 ? THR D 101 ? ASP A 91 THR A 101 1 ? 11 HELX_P HELX_P7 AA7 GLY D 107 ? GLU D 117 ? GLY A 107 GLU A 117 1 ? 11 HELX_P HELX_P8 AA8 THR D 121 ? LYS D 127 ? THR A 121 LYS A 127 1 ? 7 HELX_P HELX_P9 AA9 ASN D 128 ? LEU D 132 ? ASN A 128 LEU A 132 5 ? 5 HELX_P HELX_P10 AB1 ASN D 133 ? TYR D 142 ? ASN A 133 TYR A 142 1 ? 10 HELX_P HELX_P11 AB2 TYR D 142 ? LYS D 148 ? TYR A 142 LYS A 148 1 ? 7 HELX_P HELX_P12 AB3 ARG D 152 ? LYS D 168 ? ARG A 152 LYS A 168 1 ? 17 HELX_P HELX_P13 AB4 CYS D 178 ? ARG D 183 ? CYS A 178 ARG A 183 1 ? 6 HELX_P HELX_P14 AB5 LEU D 210 ? VAL D 221 ? LEU A 210 VAL A 221 1 ? 12 HELX_P HELX_P15 AB6 PRO D 261 ? ASP D 263 ? PRO A 261 ASP A 263 5 ? 3 HELX_P HELX_P16 AB7 GLN D 264 ? GLY D 274 ? GLN A 264 GLY A 274 1 ? 11 HELX_P HELX_P17 AB8 SER D 275 ? LYS D 289 ? SER A 275 LYS A 289 1 ? 15 HELX_P HELX_P18 AB9 SER D 315 ? ILE D 323 ? SER A 315 ILE A 323 1 ? 9 HELX_P HELX_P19 AC1 GLU D 329 ? ARG D 333 ? GLU A 329 ARG A 333 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 3 N7 ? ? ? 1_555 E MN . MN ? ? T DG 3 T MN 101 1_555 ? ? ? ? ? ? ? 2.632 ? ? metalc2 metalc ? ? E MN . MN ? ? ? 1_555 M HOH . O ? ? T MN 101 T HOH 202 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc3 metalc ? ? E MN . MN ? ? ? 1_555 M HOH . O ? ? T MN 101 T HOH 215 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc4 metalc ? ? E MN . MN ? ? ? 1_555 O HOH . O ? ? T MN 101 D HOH 101 1_555 ? ? ? ? ? ? ? 2.201 ? ? metalc5 metalc ? ? E MN . MN ? ? ? 1_555 P HOH . O ? ? T MN 101 A HOH 515 1_556 ? ? ? ? ? ? ? 2.193 ? ? metalc6 metalc ? ? B DG 4 N7 ? ? ? 1_555 G MN . MN ? ? P DG 4 P MN 102 1_555 ? ? ? ? ? ? ? 2.556 ? ? metalc7 metalc ? ? B DG 9 OP1 ? ? ? 1_555 K NA . NA ? ? P DG 9 A NA 404 1_555 ? ? ? ? ? ? ? 2.499 ? ? metalc8 metalc ? ? B DC 10 "O3'" ? ? ? 1_555 H MN . MN ? ? P DC 10 A MN 401 1_555 ? ? ? ? ? ? ? 2.231 ? ? metalc9 metalc ? ? F MN . MN ? ? ? 1_555 N HOH . O ? ? P MN 101 P HOH 208 1_555 ? ? ? ? ? ? ? 2.218 ? ? metalc10 metalc ? ? F MN . MN ? ? ? 1_555 J 8DG . O2A ? ? P MN 101 A 8DG 403 1_555 ? ? ? ? ? ? ? 2.214 ? ? metalc11 metalc ? ? F MN . MN ? ? ? 1_555 P HOH . O ? ? P MN 101 A HOH 541 1_555 ? ? ? ? ? ? ? 2.220 ? ? metalc12 metalc ? ? F MN . MN ? ? ? 1_555 P HOH . O ? ? P MN 101 A HOH 571 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc13 metalc ? ? F MN . MN ? ? ? 1_555 P HOH . O ? ? P MN 101 A HOH 572 1_555 ? ? ? ? ? ? ? 2.211 ? ? metalc14 metalc ? ? F MN . MN ? ? ? 1_555 P HOH . O ? ? P MN 101 A HOH 573 1_555 ? ? ? ? ? ? ? 2.199 ? ? metalc15 metalc ? ? N HOH . O ? ? ? 1_555 K NA . NA ? ? P HOH 204 A NA 404 1_555 ? ? ? ? ? ? ? 2.359 ? ? metalc16 metalc ? ? C DC 3 OP1 ? ? ? 1_555 L NA . NA ? ? D DC 3 A NA 405 1_555 ? ? ? ? ? ? ? 2.561 ? ? metalc17 metalc ? ? O HOH . O ? ? ? 1_555 L NA . NA ? ? D HOH 102 A NA 405 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc18 metalc ? ? D LYS 60 O ? ? ? 1_555 L NA . NA ? ? A LYS 60 A NA 405 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc19 metalc ? ? D LEU 62 O ? ? ? 1_555 L NA . NA ? ? A LEU 62 A NA 405 1_555 ? ? ? ? ? ? ? 2.462 ? ? metalc20 metalc ? ? D VAL 65 O ? ? ? 1_555 L NA . NA ? ? A VAL 65 A NA 405 1_555 ? ? ? ? ? ? ? 2.499 ? ? metalc21 metalc ? ? D THR 101 O ? ? ? 1_555 K NA . NA ? ? A THR 101 A NA 404 1_555 ? ? ? ? ? ? ? 2.273 ? ? metalc22 metalc ? ? D VAL 103 O ? ? ? 1_555 K NA . NA ? ? A VAL 103 A NA 404 1_555 ? ? ? ? ? ? ? 2.454 ? ? metalc23 metalc ? ? D ILE 106 O ? ? ? 1_555 K NA . NA ? ? A ILE 106 A NA 404 1_555 ? ? ? ? ? ? ? 2.522 ? ? metalc24 metalc ? ? D ASP 190 OD2 ? ? ? 1_555 H MN . MN ? ? A ASP 190 A MN 401 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc25 metalc ? ? D ASP 190 OD1 ? ? ? 1_555 I MN . MN ? ? A ASP 190 A MN 402 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc26 metalc ? ? D ASP 192 OD1 ? ? ? 1_555 H MN . MN ? ? A ASP 192 A MN 401 1_555 ? ? ? ? ? ? ? 2.108 ? ? metalc27 metalc ? ? D ASP 192 OD2 ? ? ? 1_555 I MN . MN ? ? A ASP 192 A MN 402 1_555 ? ? ? ? ? ? ? 2.147 ? ? metalc28 metalc ? ? D ASP 256 OD2 ? ? ? 1_555 H MN . MN ? ? A ASP 256 A MN 401 1_555 ? ? ? ? ? ? ? 2.170 ? ? metalc29 metalc ? ? H MN . MN ? ? ? 1_555 J 8DG . O1A ? ? A MN 401 A 8DG 403 1_555 ? ? ? ? ? ? ? 2.139 ? ? metalc30 metalc ? ? H MN . MN ? ? ? 1_555 P HOH . O ? ? A MN 401 A HOH 574 1_555 ? ? ? ? ? ? ? 2.220 ? ? metalc31 metalc ? ? I MN . MN ? ? ? 1_555 J 8DG . O1B ? ? A MN 402 A 8DG 403 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc32 metalc ? ? I MN . MN ? ? ? 1_555 J 8DG . O3G ? ? A MN 402 A 8DG 403 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc33 metalc ? ? I MN . MN ? ? ? 1_555 J 8DG . O1A ? ? A MN 402 A 8DG 403 1_555 ? ? ? ? ? ? ? 2.037 ? ? metalc34 metalc ? ? I MN . MN ? ? ? 1_555 P HOH . O ? ? A MN 402 A HOH 575 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc35 metalc ? ? K NA . NA ? ? ? 1_555 P HOH . O ? ? A NA 404 A HOH 576 1_555 ? ? ? ? ? ? ? 2.393 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 C DG 5 N1 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 C DG 5 O6 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 C DG 5 N2 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 C DG 4 N1 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 C DG 4 O6 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 C DG 4 N2 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 C DC 3 N3 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 C DC 3 O2 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 C DC 3 N4 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 C DT 2 N3 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 C DT 2 O4 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 C DG 1 N1 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 C DG 1 O6 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 C DG 1 N2 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 10 N3 ? ? T DG 7 P DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 10 O2 ? ? T DG 7 P DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 10 N4 ? ? T DG 7 P DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 9 N1 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 9 O6 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 9 N2 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 8 N3 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 8 O2 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 8 N4 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 7 N1 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 7 O6 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 7 N2 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 6 N3 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 6 O4 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 5 N1 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 5 N6 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 4 N1 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 4 O6 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 4 N2 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B DT 3 N3 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B DT 3 O4 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 2 N3 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 2 O2 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 2 N4 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 1 N1 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 1 O6 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 1 N2 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 274 _struct_mon_prot_cis.label_asym_id D _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 274 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 275 _struct_mon_prot_cis.pdbx_label_asym_id_2 D _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 275 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.42 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 5 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE D 150 ? PRO D 151 ? ILE A 150 PRO A 151 AA1 2 SER D 187 ? SER D 188 ? SER A 187 SER A 188 AA2 1 ILE D 174 ? VAL D 177 ? ILE A 174 VAL A 177 AA2 2 MET D 191 ? THR D 196 ? MET A 191 THR A 196 AA2 3 ARG D 253 ? LEU D 259 ? ARG A 253 LEU A 259 AA2 4 LYS D 234 ? CYS D 239 ? LYS A 234 CYS A 239 AA2 5 ILE D 224 ? LYS D 230 ? ILE A 224 LYS A 230 AA3 1 THR D 292 ? ILE D 293 ? THR A 292 ILE A 293 AA3 2 ILE D 298 ? ARG D 299 ? ILE A 298 ARG A 299 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE D 150 ? N ILE A 150 O SER D 188 ? O SER A 188 AA2 1 2 N THR D 176 ? N THR A 176 O LEU D 194 ? O LEU A 194 AA2 2 3 N VAL D 193 ? N VAL A 193 O ASP D 256 ? O ASP A 256 AA2 3 4 O ARG D 253 ? O ARG A 253 N CYS D 239 ? N CYS A 239 AA2 4 5 O MET D 236 ? O MET A 236 N LEU D 228 ? N LEU A 228 AA3 1 2 N THR D 292 ? N THR A 292 O ARG D 299 ? O ARG A 299 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software T MN 101 ? 5 'binding site for residue MN T 101' AC2 Software P MN 101 ? 6 'binding site for residue MN P 101' AC3 Software P MN 102 ? 1 'binding site for residue MN P 102' AC4 Software A MN 401 ? 7 'binding site for residue MN A 401' AC5 Software A MN 402 ? 5 'binding site for residue MN A 402' AC6 Software A 8DG 403 ? 28 'binding site for residue 8DG A 403' AC7 Software A NA 404 ? 6 'binding site for residue NA A 404' AC8 Software A NA 405 ? 5 'binding site for residue NA A 405' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HOH P . ? HOH A 515 . ? 1_556 ? 2 AC1 5 HOH O . ? HOH D 101 . ? 1_555 ? 3 AC1 5 DG A 3 ? DG T 3 . ? 1_555 ? 4 AC1 5 HOH M . ? HOH T 202 . ? 1_555 ? 5 AC1 5 HOH M . ? HOH T 215 . ? 1_555 ? 6 AC2 6 8DG J . ? 8DG A 403 . ? 1_555 ? 7 AC2 6 HOH P . ? HOH A 541 . ? 1_555 ? 8 AC2 6 HOH P . ? HOH A 571 . ? 1_555 ? 9 AC2 6 HOH P . ? HOH A 572 . ? 1_555 ? 10 AC2 6 HOH P . ? HOH A 573 . ? 1_555 ? 11 AC2 6 HOH N . ? HOH P 208 . ? 1_555 ? 12 AC3 1 DG B 4 ? DG P 4 . ? 1_555 ? 13 AC4 7 ASP D 190 ? ASP A 190 . ? 1_555 ? 14 AC4 7 ASP D 192 ? ASP A 192 . ? 1_555 ? 15 AC4 7 ASP D 256 ? ASP A 256 . ? 1_555 ? 16 AC4 7 MN I . ? MN A 402 . ? 1_555 ? 17 AC4 7 8DG J . ? 8DG A 403 . ? 1_555 ? 18 AC4 7 HOH P . ? HOH A 574 . ? 1_555 ? 19 AC4 7 DC B 10 ? DC P 10 . ? 1_555 ? 20 AC5 5 ASP D 190 ? ASP A 190 . ? 1_555 ? 21 AC5 5 ASP D 192 ? ASP A 192 . ? 1_555 ? 22 AC5 5 MN H . ? MN A 401 . ? 1_555 ? 23 AC5 5 8DG J . ? 8DG A 403 . ? 1_555 ? 24 AC5 5 HOH P . ? HOH A 575 . ? 1_555 ? 25 AC6 28 ARG D 149 ? ARG A 149 . ? 1_555 ? 26 AC6 28 GLY D 179 ? GLY A 179 . ? 1_555 ? 27 AC6 28 SER D 180 ? SER A 180 . ? 1_555 ? 28 AC6 28 ARG D 183 ? ARG A 183 . ? 1_555 ? 29 AC6 28 SER D 188 ? SER A 188 . ? 1_555 ? 30 AC6 28 GLY D 189 ? GLY A 189 . ? 1_555 ? 31 AC6 28 ASP D 190 ? ASP A 190 . ? 1_555 ? 32 AC6 28 ASP D 192 ? ASP A 192 . ? 1_555 ? 33 AC6 28 TYR D 271 ? TYR A 271 . ? 1_555 ? 34 AC6 28 PHE D 272 ? PHE A 272 . ? 1_555 ? 35 AC6 28 THR D 273 ? THR A 273 . ? 1_555 ? 36 AC6 28 GLY D 274 ? GLY A 274 . ? 1_555 ? 37 AC6 28 ASP D 276 ? ASP A 276 . ? 1_555 ? 38 AC6 28 ASN D 279 ? ASN A 279 . ? 1_555 ? 39 AC6 28 ARG D 283 ? ARG A 283 . ? 1_555 ? 40 AC6 28 MN H . ? MN A 401 . ? 1_555 ? 41 AC6 28 MN I . ? MN A 402 . ? 1_555 ? 42 AC6 28 HOH P . ? HOH A 527 . ? 1_555 ? 43 AC6 28 HOH P . ? HOH A 541 . ? 1_555 ? 44 AC6 28 HOH P . ? HOH A 571 . ? 1_555 ? 45 AC6 28 HOH P . ? HOH A 572 . ? 1_555 ? 46 AC6 28 HOH P . ? HOH A 574 . ? 1_555 ? 47 AC6 28 HOH P . ? HOH A 575 . ? 1_555 ? 48 AC6 28 DC B 10 ? DC P 10 . ? 1_555 ? 49 AC6 28 MN F . ? MN P 101 . ? 1_555 ? 50 AC6 28 HOH N . ? HOH P 208 . ? 1_555 ? 51 AC6 28 DC A 6 ? DC T 6 . ? 1_555 ? 52 AC6 28 DG A 7 ? DG T 7 . ? 1_555 ? 53 AC7 6 THR D 101 ? THR A 101 . ? 1_555 ? 54 AC7 6 VAL D 103 ? VAL A 103 . ? 1_555 ? 55 AC7 6 ILE D 106 ? ILE A 106 . ? 1_555 ? 56 AC7 6 HOH P . ? HOH A 576 . ? 1_555 ? 57 AC7 6 DG B 9 ? DG P 9 . ? 1_555 ? 58 AC7 6 HOH N . ? HOH P 204 . ? 1_555 ? 59 AC8 5 LYS D 60 ? LYS A 60 . ? 1_555 ? 60 AC8 5 LEU D 62 ? LEU A 62 . ? 1_555 ? 61 AC8 5 VAL D 65 ? VAL A 65 . ? 1_555 ? 62 AC8 5 DC C 3 ? DC D 3 . ? 1_555 ? 63 AC8 5 HOH O . ? HOH D 102 . ? 1_555 ? # _atom_sites.entry_id 4UB5 _atom_sites.fract_transf_matrix[1][1] 0.018160 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008177 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012868 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019899 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H MN N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC T . n A 1 2 DC 2 2 2 DC DC T . n A 1 3 DG 3 3 3 DG DG T . n A 1 4 DA 4 4 4 DA DA T . n A 1 5 DC 5 5 5 DC DC T . n A 1 6 DC 6 6 6 DC DC T . n A 1 7 DG 7 7 7 DG DG T . n A 1 8 DC 8 8 8 DC DC T . n A 1 9 DG 9 9 9 DG DG T . n A 1 10 DC 10 10 10 DC DC T . n A 1 11 DA 11 11 11 DA DA T . n A 1 12 DT 12 12 12 DT DT T . n A 1 13 DC 13 13 13 DC DC T . n A 1 14 DA 14 14 14 DA DA T . n A 1 15 DG 15 15 15 DG DG T . n A 1 16 DC 16 16 16 DC DC T . n B 2 1 DG 1 1 1 DG DG P . n B 2 2 DC 2 2 2 DC DC P . n B 2 3 DT 3 3 3 DT DT P . n B 2 4 DG 4 4 4 DG DG P . n B 2 5 DA 5 5 5 DA DA P . n B 2 6 DT 6 6 6 DT DT P . n B 2 7 DG 7 7 7 DG DG P . n B 2 8 DC 8 8 8 DC DC P . n B 2 9 DG 9 9 9 DG DG P . n B 2 10 DC 10 10 10 DC DC P . n C 3 1 DG 1 1 1 DG DG D . n C 3 2 DT 2 2 2 DT DT D . n C 3 3 DC 3 3 3 DC DC D . n C 3 4 DG 4 4 4 DG DG D . n C 3 5 DG 5 5 5 DG DG D . n D 4 1 MET 1 1 ? ? ? A . n D 4 2 SER 2 2 ? ? ? A . n D 4 3 LYS 3 3 ? ? ? A . n D 4 4 ARG 4 4 ? ? ? A . n D 4 5 LYS 5 5 ? ? ? A . n D 4 6 ALA 6 6 ? ? ? A . n D 4 7 PRO 7 7 ? ? ? A . n D 4 8 GLN 8 8 ? ? ? A . n D 4 9 GLU 9 9 ? ? ? A . n D 4 10 THR 10 10 10 THR THR A . n D 4 11 LEU 11 11 11 LEU LEU A . n D 4 12 ASN 12 12 12 ASN ASN A . n D 4 13 GLY 13 13 13 GLY GLY A . n D 4 14 GLY 14 14 14 GLY GLY A . n D 4 15 ILE 15 15 15 ILE ILE A . n D 4 16 THR 16 16 16 THR THR A . n D 4 17 ASP 17 17 17 ASP ASP A . n D 4 18 MET 18 18 18 MET MET A . n D 4 19 LEU 19 19 19 LEU LEU A . n D 4 20 THR 20 20 20 THR THR A . n D 4 21 GLU 21 21 21 GLU GLU A . n D 4 22 LEU 22 22 22 LEU LEU A . n D 4 23 ALA 23 23 23 ALA ALA A . n D 4 24 ASN 24 24 24 ASN ASN A . n D 4 25 PHE 25 25 25 PHE PHE A . n D 4 26 GLU 26 26 26 GLU GLU A . n D 4 27 LYS 27 27 27 LYS LYS A . n D 4 28 ASN 28 28 28 ASN ASN A . n D 4 29 VAL 29 29 29 VAL VAL A . n D 4 30 SER 30 30 30 SER SER A . n D 4 31 GLN 31 31 31 GLN GLN A . n D 4 32 ALA 32 32 32 ALA ALA A . n D 4 33 ILE 33 33 33 ILE ILE A . n D 4 34 HIS 34 34 34 HIS HIS A . n D 4 35 LYS 35 35 35 LYS LYS A . n D 4 36 TYR 36 36 36 TYR TYR A . n D 4 37 ASN 37 37 37 ASN ASN A . n D 4 38 ALA 38 38 38 ALA ALA A . n D 4 39 TYR 39 39 39 TYR TYR A . n D 4 40 ARG 40 40 40 ARG ARG A . n D 4 41 LYS 41 41 41 LYS LYS A . n D 4 42 ALA 42 42 42 ALA ALA A . n D 4 43 ALA 43 43 43 ALA ALA A . n D 4 44 SER 44 44 44 SER SER A . n D 4 45 VAL 45 45 45 VAL VAL A . n D 4 46 ILE 46 46 46 ILE ILE A . n D 4 47 ALA 47 47 47 ALA ALA A . n D 4 48 LYS 48 48 48 LYS LYS A . n D 4 49 TYR 49 49 49 TYR TYR A . n D 4 50 PRO 50 50 50 PRO PRO A . n D 4 51 HIS 51 51 51 HIS HIS A . n D 4 52 LYS 52 52 52 LYS LYS A . n D 4 53 ILE 53 53 53 ILE ILE A . n D 4 54 LYS 54 54 54 LYS LYS A . n D 4 55 SER 55 55 55 SER SER A . n D 4 56 GLY 56 56 56 GLY GLY A . n D 4 57 ALA 57 57 57 ALA ALA A . n D 4 58 GLU 58 58 58 GLU GLU A . n D 4 59 ALA 59 59 59 ALA ALA A . n D 4 60 LYS 60 60 60 LYS LYS A . n D 4 61 LYS 61 61 61 LYS LYS A . n D 4 62 LEU 62 62 62 LEU LEU A . n D 4 63 PRO 63 63 63 PRO PRO A . n D 4 64 GLY 64 64 64 GLY GLY A . n D 4 65 VAL 65 65 65 VAL VAL A . n D 4 66 GLY 66 66 66 GLY GLY A . n D 4 67 THR 67 67 67 THR THR A . n D 4 68 LYS 68 68 68 LYS LYS A . n D 4 69 ILE 69 69 69 ILE ILE A . n D 4 70 ALA 70 70 70 ALA ALA A . n D 4 71 GLU 71 71 71 GLU GLU A . n D 4 72 LYS 72 72 72 LYS LYS A . n D 4 73 ILE 73 73 73 ILE ILE A . n D 4 74 ASP 74 74 74 ASP ASP A . n D 4 75 GLU 75 75 75 GLU GLU A . n D 4 76 PHE 76 76 76 PHE PHE A . n D 4 77 LEU 77 77 77 LEU LEU A . n D 4 78 ALA 78 78 78 ALA ALA A . n D 4 79 THR 79 79 79 THR THR A . n D 4 80 GLY 80 80 80 GLY GLY A . n D 4 81 LYS 81 81 81 LYS LYS A . n D 4 82 LEU 82 82 82 LEU LEU A . n D 4 83 ARG 83 83 83 ARG ARG A . n D 4 84 LYS 84 84 84 LYS LYS A . n D 4 85 LEU 85 85 85 LEU LEU A . n D 4 86 GLU 86 86 86 GLU GLU A . n D 4 87 LYS 87 87 87 LYS LYS A . n D 4 88 ILE 88 88 88 ILE ILE A . n D 4 89 ARG 89 89 89 ARG ARG A . n D 4 90 GLN 90 90 90 GLN GLN A . n D 4 91 ASP 91 91 91 ASP ASP A . n D 4 92 ASP 92 92 92 ASP ASP A . n D 4 93 THR 93 93 93 THR THR A . n D 4 94 SER 94 94 94 SER SER A . n D 4 95 SER 95 95 95 SER SER A . n D 4 96 SER 96 96 96 SER SER A . n D 4 97 ILE 97 97 97 ILE ILE A . n D 4 98 ASN 98 98 98 ASN ASN A . n D 4 99 PHE 99 99 99 PHE PHE A . n D 4 100 LEU 100 100 100 LEU LEU A . n D 4 101 THR 101 101 101 THR THR A . n D 4 102 ARG 102 102 102 ARG ARG A . n D 4 103 VAL 103 103 103 VAL VAL A . n D 4 104 SER 104 104 104 SER SER A . n D 4 105 GLY 105 105 105 GLY GLY A . n D 4 106 ILE 106 106 106 ILE ILE A . n D 4 107 GLY 107 107 107 GLY GLY A . n D 4 108 PRO 108 108 108 PRO PRO A . n D 4 109 SER 109 109 109 SER SER A . n D 4 110 ALA 110 110 110 ALA ALA A . n D 4 111 ALA 111 111 111 ALA ALA A . n D 4 112 ARG 112 112 112 ARG ARG A . n D 4 113 LYS 113 113 113 LYS LYS A . n D 4 114 PHE 114 114 114 PHE PHE A . n D 4 115 VAL 115 115 115 VAL VAL A . n D 4 116 ASP 116 116 116 ASP ASP A . n D 4 117 GLU 117 117 117 GLU GLU A . n D 4 118 GLY 118 118 118 GLY GLY A . n D 4 119 ILE 119 119 119 ILE ILE A . n D 4 120 LYS 120 120 120 LYS LYS A . n D 4 121 THR 121 121 121 THR THR A . n D 4 122 LEU 122 122 122 LEU LEU A . n D 4 123 GLU 123 123 123 GLU GLU A . n D 4 124 ASP 124 124 124 ASP ASP A . n D 4 125 LEU 125 125 125 LEU LEU A . n D 4 126 ARG 126 126 126 ARG ARG A . n D 4 127 LYS 127 127 127 LYS LYS A . n D 4 128 ASN 128 128 128 ASN ASN A . n D 4 129 GLU 129 129 129 GLU GLU A . n D 4 130 ASP 130 130 130 ASP ASP A . n D 4 131 LYS 131 131 131 LYS LYS A . n D 4 132 LEU 132 132 132 LEU LEU A . n D 4 133 ASN 133 133 133 ASN ASN A . n D 4 134 HIS 134 134 134 HIS HIS A . n D 4 135 HIS 135 135 135 HIS HIS A . n D 4 136 GLN 136 136 136 GLN GLN A . n D 4 137 ARG 137 137 137 ARG ARG A . n D 4 138 ILE 138 138 138 ILE ILE A . n D 4 139 GLY 139 139 139 GLY GLY A . n D 4 140 LEU 140 140 140 LEU LEU A . n D 4 141 LYS 141 141 141 LYS LYS A . n D 4 142 TYR 142 142 142 TYR TYR A . n D 4 143 PHE 143 143 143 PHE PHE A . n D 4 144 GLY 144 144 144 GLY GLY A . n D 4 145 ASP 145 145 145 ASP ASP A . n D 4 146 PHE 146 146 146 PHE PHE A . n D 4 147 GLU 147 147 147 GLU GLU A . n D 4 148 LYS 148 148 148 LYS LYS A . n D 4 149 ARG 149 149 149 ARG ARG A . n D 4 150 ILE 150 150 150 ILE ILE A . n D 4 151 PRO 151 151 151 PRO PRO A . n D 4 152 ARG 152 152 152 ARG ARG A . n D 4 153 GLU 153 153 153 GLU GLU A . n D 4 154 GLU 154 154 154 GLU GLU A . n D 4 155 MET 155 155 155 MET MET A . n D 4 156 LEU 156 156 156 LEU LEU A . n D 4 157 GLN 157 157 157 GLN GLN A . n D 4 158 MET 158 158 158 MET MET A . n D 4 159 GLN 159 159 159 GLN GLN A . n D 4 160 ASP 160 160 160 ASP ASP A . n D 4 161 ILE 161 161 161 ILE ILE A . n D 4 162 VAL 162 162 162 VAL VAL A . n D 4 163 LEU 163 163 163 LEU LEU A . n D 4 164 ASN 164 164 164 ASN ASN A . n D 4 165 GLU 165 165 165 GLU GLU A . n D 4 166 VAL 166 166 166 VAL VAL A . n D 4 167 LYS 167 167 167 LYS LYS A . n D 4 168 LYS 168 168 168 LYS LYS A . n D 4 169 VAL 169 169 169 VAL VAL A . n D 4 170 ASP 170 170 170 ASP ASP A . n D 4 171 SER 171 171 171 SER SER A . n D 4 172 GLU 172 172 172 GLU GLU A . n D 4 173 TYR 173 173 173 TYR TYR A . n D 4 174 ILE 174 174 174 ILE ILE A . n D 4 175 ALA 175 175 175 ALA ALA A . n D 4 176 THR 176 176 176 THR THR A . n D 4 177 VAL 177 177 177 VAL VAL A . n D 4 178 CYS 178 178 178 CYS CYS A . n D 4 179 GLY 179 179 179 GLY GLY A . n D 4 180 SER 180 180 180 SER SER A . n D 4 181 PHE 181 181 181 PHE PHE A . n D 4 182 ARG 182 182 182 ARG ARG A . n D 4 183 ARG 183 183 183 ARG ARG A . n D 4 184 GLY 184 184 184 GLY GLY A . n D 4 185 ALA 185 185 185 ALA ALA A . n D 4 186 GLU 186 186 186 GLU GLU A . n D 4 187 SER 187 187 187 SER SER A . n D 4 188 SER 188 188 188 SER SER A . n D 4 189 GLY 189 189 189 GLY GLY A . n D 4 190 ASP 190 190 190 ASP ASP A . n D 4 191 MET 191 191 191 MET MET A . n D 4 192 ASP 192 192 192 ASP ASP A . n D 4 193 VAL 193 193 193 VAL VAL A . n D 4 194 LEU 194 194 194 LEU LEU A . n D 4 195 LEU 195 195 195 LEU LEU A . n D 4 196 THR 196 196 196 THR THR A . n D 4 197 HIS 197 197 197 HIS HIS A . n D 4 198 PRO 198 198 198 PRO PRO A . n D 4 199 SER 199 199 199 SER SER A . n D 4 200 PHE 200 200 200 PHE PHE A . n D 4 201 THR 201 201 201 THR THR A . n D 4 202 SER 202 202 202 SER SER A . n D 4 203 GLU 203 203 203 GLU GLU A . n D 4 204 SER 204 204 204 SER SER A . n D 4 205 THR 205 205 ? ? ? A . n D 4 206 LYS 206 206 ? ? ? A . n D 4 207 GLN 207 207 ? ? ? A . n D 4 208 PRO 208 208 ? ? ? A . n D 4 209 LYS 209 209 209 LYS LYS A . n D 4 210 LEU 210 210 210 LEU LEU A . n D 4 211 LEU 211 211 211 LEU LEU A . n D 4 212 HIS 212 212 212 HIS HIS A . n D 4 213 GLN 213 213 213 GLN GLN A . n D 4 214 VAL 214 214 214 VAL VAL A . n D 4 215 VAL 215 215 215 VAL VAL A . n D 4 216 GLU 216 216 216 GLU GLU A . n D 4 217 GLN 217 217 217 GLN GLN A . n D 4 218 LEU 218 218 218 LEU LEU A . n D 4 219 GLN 219 219 219 GLN GLN A . n D 4 220 LYS 220 220 220 LYS LYS A . n D 4 221 VAL 221 221 221 VAL VAL A . n D 4 222 HIS 222 222 222 HIS HIS A . n D 4 223 PHE 223 223 223 PHE PHE A . n D 4 224 ILE 224 224 224 ILE ILE A . n D 4 225 THR 225 225 225 THR THR A . n D 4 226 ASP 226 226 226 ASP ASP A . n D 4 227 THR 227 227 227 THR THR A . n D 4 228 LEU 228 228 228 LEU LEU A . n D 4 229 SER 229 229 229 SER SER A . n D 4 230 LYS 230 230 230 LYS LYS A . n D 4 231 GLY 231 231 231 GLY GLY A . n D 4 232 GLU 232 232 232 GLU GLU A . n D 4 233 THR 233 233 233 THR THR A . n D 4 234 LYS 234 234 234 LYS LYS A . n D 4 235 PHE 235 235 235 PHE PHE A . n D 4 236 MET 236 236 236 MET MET A . n D 4 237 GLY 237 237 237 GLY GLY A . n D 4 238 VAL 238 238 238 VAL VAL A . n D 4 239 CYS 239 239 239 CYS CYS A . n D 4 240 GLN 240 240 240 GLN GLN A . n D 4 241 LEU 241 241 241 LEU LEU A . n D 4 242 PRO 242 242 242 PRO PRO A . n D 4 243 SER 243 243 243 SER SER A . n D 4 244 LYS 244 244 ? ? ? A . n D 4 245 ASN 245 245 ? ? ? A . n D 4 246 ASP 246 246 ? ? ? A . n D 4 247 GLU 247 247 ? ? ? A . n D 4 248 LYS 248 248 ? ? ? A . n D 4 249 GLU 249 249 249 GLU GLU A . n D 4 250 TYR 250 250 250 TYR TYR A . n D 4 251 PRO 251 251 251 PRO PRO A . n D 4 252 HIS 252 252 252 HIS HIS A . n D 4 253 ARG 253 253 253 ARG ARG A . n D 4 254 ARG 254 254 254 ARG ARG A . n D 4 255 ILE 255 255 255 ILE ILE A . n D 4 256 ASP 256 256 256 ASP ASP A . n D 4 257 ILE 257 257 257 ILE ILE A . n D 4 258 ARG 258 258 258 ARG ARG A . n D 4 259 LEU 259 259 259 LEU LEU A . n D 4 260 ILE 260 260 260 ILE ILE A . n D 4 261 PRO 261 261 261 PRO PRO A . n D 4 262 LYS 262 262 262 LYS LYS A . n D 4 263 ASP 263 263 263 ASP ASP A . n D 4 264 GLN 264 264 264 GLN GLN A . n D 4 265 TYR 265 265 265 TYR TYR A . n D 4 266 TYR 266 266 266 TYR TYR A . n D 4 267 CYS 267 267 267 CYS CYS A . n D 4 268 GLY 268 268 268 GLY GLY A . n D 4 269 VAL 269 269 269 VAL VAL A . n D 4 270 LEU 270 270 270 LEU LEU A . n D 4 271 TYR 271 271 271 TYR TYR A . n D 4 272 PHE 272 272 272 PHE PHE A . n D 4 273 THR 273 273 273 THR THR A . n D 4 274 GLY 274 274 274 GLY GLY A . n D 4 275 SER 275 275 275 SER SER A . n D 4 276 ASP 276 276 276 ASP ASP A . n D 4 277 ILE 277 277 277 ILE ILE A . n D 4 278 PHE 278 278 278 PHE PHE A . n D 4 279 ASN 279 279 279 ASN ASN A . n D 4 280 LYS 280 280 280 LYS LYS A . n D 4 281 ASN 281 281 281 ASN ASN A . n D 4 282 MET 282 282 282 MET MET A . n D 4 283 ARG 283 283 283 ARG ARG A . n D 4 284 ALA 284 284 284 ALA ALA A . n D 4 285 HIS 285 285 285 HIS HIS A . n D 4 286 ALA 286 286 286 ALA ALA A . n D 4 287 LEU 287 287 287 LEU LEU A . n D 4 288 GLU 288 288 288 GLU GLU A . n D 4 289 LYS 289 289 289 LYS LYS A . n D 4 290 GLY 290 290 290 GLY GLY A . n D 4 291 PHE 291 291 291 PHE PHE A . n D 4 292 THR 292 292 292 THR THR A . n D 4 293 ILE 293 293 293 ILE ILE A . n D 4 294 ASN 294 294 294 ASN ASN A . n D 4 295 GLU 295 295 295 GLU GLU A . n D 4 296 TYR 296 296 296 TYR TYR A . n D 4 297 THR 297 297 297 THR THR A . n D 4 298 ILE 298 298 298 ILE ILE A . n D 4 299 ARG 299 299 299 ARG ARG A . n D 4 300 PRO 300 300 300 PRO PRO A . n D 4 301 LEU 301 301 ? ? ? A . n D 4 302 GLY 302 302 ? ? ? A . n D 4 303 VAL 303 303 ? ? ? A . n D 4 304 THR 304 304 ? ? ? A . n D 4 305 GLY 305 305 ? ? ? A . n D 4 306 VAL 306 306 ? ? ? A . n D 4 307 ALA 307 307 ? ? ? A . n D 4 308 GLY 308 308 308 GLY GLY A . n D 4 309 GLU 309 309 309 GLU GLU A . n D 4 310 PRO 310 310 310 PRO PRO A . n D 4 311 LEU 311 311 311 LEU LEU A . n D 4 312 PRO 312 312 312 PRO PRO A . n D 4 313 VAL 313 313 313 VAL VAL A . n D 4 314 ASP 314 314 314 ASP ASP A . n D 4 315 SER 315 315 315 SER SER A . n D 4 316 GLU 316 316 316 GLU GLU A . n D 4 317 LYS 317 317 317 LYS LYS A . n D 4 318 ASP 318 318 318 ASP ASP A . n D 4 319 ILE 319 319 319 ILE ILE A . n D 4 320 PHE 320 320 320 PHE PHE A . n D 4 321 ASP 321 321 321 ASP ASP A . n D 4 322 TYR 322 322 322 TYR TYR A . n D 4 323 ILE 323 323 323 ILE ILE A . n D 4 324 GLN 324 324 324 GLN GLN A . n D 4 325 TRP 325 325 325 TRP TRP A . n D 4 326 LYS 326 326 326 LYS LYS A . n D 4 327 TYR 327 327 327 TYR TYR A . n D 4 328 ARG 328 328 328 ARG ARG A . n D 4 329 GLU 329 329 329 GLU GLU A . n D 4 330 PRO 330 330 330 PRO PRO A . n D 4 331 LYS 331 331 331 LYS LYS A . n D 4 332 ASP 332 332 332 ASP ASP A . n D 4 333 ARG 333 333 333 ARG ARG A . n D 4 334 SER 334 334 334 SER SER A . n D 4 335 GLU 335 335 335 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MN 1 101 4 MN MN T . F 5 MN 1 101 3 MN MN P . G 5 MN 1 102 5 MN MN P . H 5 MN 1 401 1 MN MN A . I 5 MN 1 402 2 MN MN A . J 6 8DG 1 403 338 8DG 8DG A . K 7 NA 1 404 1 NA NA A . L 7 NA 1 405 2 NA NA A . M 8 HOH 1 201 84 HOH HOH T . M 8 HOH 2 202 100 HOH HOH T . M 8 HOH 3 203 9 HOH HOH T . M 8 HOH 4 204 12 HOH HOH T . M 8 HOH 5 205 22 HOH HOH T . M 8 HOH 6 206 26 HOH HOH T . M 8 HOH 7 207 41 HOH HOH T . M 8 HOH 8 208 43 HOH HOH T . M 8 HOH 9 209 51 HOH HOH T . M 8 HOH 10 210 66 HOH HOH T . M 8 HOH 11 211 67 HOH HOH T . M 8 HOH 12 212 74 HOH HOH T . M 8 HOH 13 213 85 HOH HOH T . M 8 HOH 14 214 88 HOH HOH T . M 8 HOH 15 215 97 HOH HOH T . M 8 HOH 16 216 101 HOH HOH T . N 8 HOH 1 201 10 HOH HOH P . N 8 HOH 2 202 11 HOH HOH P . N 8 HOH 3 203 34 HOH HOH P . N 8 HOH 4 204 49 HOH HOH P . N 8 HOH 5 205 70 HOH HOH P . N 8 HOH 6 206 80 HOH HOH P . N 8 HOH 7 207 82 HOH HOH P . N 8 HOH 8 208 4 HOH HOH P . N 8 HOH 9 209 102 HOH HOH P . O 8 HOH 1 101 99 HOH HOH D . O 8 HOH 2 102 105 HOH HOH D . P 8 HOH 1 501 17 HOH HOH A . P 8 HOH 2 502 59 HOH HOH A . P 8 HOH 3 503 64 HOH HOH A . P 8 HOH 4 504 23 HOH HOH A . P 8 HOH 5 505 21 HOH HOH A . P 8 HOH 6 506 46 HOH HOH A . P 8 HOH 7 507 90 HOH HOH A . P 8 HOH 8 508 83 HOH HOH A . P 8 HOH 9 509 106 HOH HOH A . P 8 HOH 10 510 50 HOH HOH A . P 8 HOH 11 511 73 HOH HOH A . P 8 HOH 12 512 61 HOH HOH A . P 8 HOH 13 513 86 HOH HOH A . P 8 HOH 14 514 39 HOH HOH A . P 8 HOH 15 515 98 HOH HOH A . P 8 HOH 16 516 6 HOH HOH A . P 8 HOH 17 517 7 HOH HOH A . P 8 HOH 18 518 8 HOH HOH A . P 8 HOH 19 519 13 HOH HOH A . P 8 HOH 20 520 14 HOH HOH A . P 8 HOH 21 521 15 HOH HOH A . P 8 HOH 22 522 16 HOH HOH A . P 8 HOH 23 523 18 HOH HOH A . P 8 HOH 24 524 19 HOH HOH A . P 8 HOH 25 525 20 HOH HOH A . P 8 HOH 26 526 24 HOH HOH A . P 8 HOH 27 527 25 HOH HOH A . P 8 HOH 28 528 27 HOH HOH A . P 8 HOH 29 529 28 HOH HOH A . P 8 HOH 30 530 29 HOH HOH A . P 8 HOH 31 531 30 HOH HOH A . P 8 HOH 32 532 31 HOH HOH A . P 8 HOH 33 533 32 HOH HOH A . P 8 HOH 34 534 33 HOH HOH A . P 8 HOH 35 535 35 HOH HOH A . P 8 HOH 36 536 36 HOH HOH A . P 8 HOH 37 537 37 HOH HOH A . P 8 HOH 38 538 38 HOH HOH A . P 8 HOH 39 539 40 HOH HOH A . P 8 HOH 40 540 42 HOH HOH A . P 8 HOH 41 541 44 HOH HOH A . P 8 HOH 42 542 45 HOH HOH A . P 8 HOH 43 543 47 HOH HOH A . P 8 HOH 44 544 48 HOH HOH A . P 8 HOH 45 545 52 HOH HOH A . P 8 HOH 46 546 53 HOH HOH A . P 8 HOH 47 547 54 HOH HOH A . P 8 HOH 48 548 55 HOH HOH A . P 8 HOH 49 549 56 HOH HOH A . P 8 HOH 50 550 57 HOH HOH A . P 8 HOH 51 551 58 HOH HOH A . P 8 HOH 52 552 60 HOH HOH A . P 8 HOH 53 553 62 HOH HOH A . P 8 HOH 54 554 63 HOH HOH A . P 8 HOH 55 555 65 HOH HOH A . P 8 HOH 56 556 68 HOH HOH A . P 8 HOH 57 557 69 HOH HOH A . P 8 HOH 58 558 71 HOH HOH A . P 8 HOH 59 559 75 HOH HOH A . P 8 HOH 60 560 76 HOH HOH A . P 8 HOH 61 561 77 HOH HOH A . P 8 HOH 62 562 79 HOH HOH A . P 8 HOH 63 563 81 HOH HOH A . P 8 HOH 64 564 87 HOH HOH A . P 8 HOH 65 565 89 HOH HOH A . P 8 HOH 66 566 91 HOH HOH A . P 8 HOH 67 567 92 HOH HOH A . P 8 HOH 68 568 93 HOH HOH A . P 8 HOH 69 569 94 HOH HOH A . P 8 HOH 70 570 1 HOH HOH A . P 8 HOH 71 571 2 HOH HOH A . P 8 HOH 72 572 3 HOH HOH A . P 8 HOH 73 573 5 HOH HOH A . P 8 HOH 74 574 95 HOH HOH A . P 8 HOH 75 575 96 HOH HOH A . P 8 HOH 76 576 103 HOH HOH A . P 8 HOH 77 577 104 HOH HOH A . P 8 HOH 78 578 107 HOH HOH A . P 8 HOH 79 579 108 HOH HOH A . P 8 HOH 80 580 109 HOH HOH A . P 8 HOH 81 581 110 HOH HOH A . P 8 HOH 82 582 111 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6260 ? 1 MORE -81 ? 1 'SSA (A^2)' 18440 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 3 ? T DG 3 ? 1_555 MN ? E MN . ? T MN 101 ? 1_555 O ? M HOH . ? T HOH 202 ? 1_555 74.5 ? 2 N7 ? A DG 3 ? T DG 3 ? 1_555 MN ? E MN . ? T MN 101 ? 1_555 O ? M HOH . ? T HOH 215 ? 1_555 85.9 ? 3 O ? M HOH . ? T HOH 202 ? 1_555 MN ? E MN . ? T MN 101 ? 1_555 O ? M HOH . ? T HOH 215 ? 1_555 158.9 ? 4 N7 ? A DG 3 ? T DG 3 ? 1_555 MN ? E MN . ? T MN 101 ? 1_555 O ? O HOH . ? D HOH 101 ? 1_555 104.1 ? 5 O ? M HOH . ? T HOH 202 ? 1_555 MN ? E MN . ? T MN 101 ? 1_555 O ? O HOH . ? D HOH 101 ? 1_555 91.8 ? 6 O ? M HOH . ? T HOH 215 ? 1_555 MN ? E MN . ? T MN 101 ? 1_555 O ? O HOH . ? D HOH 101 ? 1_555 100.6 ? 7 N7 ? A DG 3 ? T DG 3 ? 1_555 MN ? E MN . ? T MN 101 ? 1_555 O ? P HOH . ? A HOH 515 ? 1_556 168.1 ? 8 O ? M HOH . ? T HOH 202 ? 1_555 MN ? E MN . ? T MN 101 ? 1_555 O ? P HOH . ? A HOH 515 ? 1_556 111.0 ? 9 O ? M HOH . ? T HOH 215 ? 1_555 MN ? E MN . ? T MN 101 ? 1_555 O ? P HOH . ? A HOH 515 ? 1_556 86.9 ? 10 O ? O HOH . ? D HOH 101 ? 1_555 MN ? E MN . ? T MN 101 ? 1_555 O ? P HOH . ? A HOH 515 ? 1_556 86.5 ? 11 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? N HOH . ? P HOH 204 ? 1_555 90.9 ? 12 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? D THR 101 ? A THR 101 ? 1_555 163.6 ? 13 O ? N HOH . ? P HOH 204 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? D THR 101 ? A THR 101 ? 1_555 81.5 ? 14 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? D VAL 103 ? A VAL 103 ? 1_555 94.5 ? 15 O ? N HOH . ? P HOH 204 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? D VAL 103 ? A VAL 103 ? 1_555 174.5 ? 16 O ? D THR 101 ? A THR 101 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? D VAL 103 ? A VAL 103 ? 1_555 93.2 ? 17 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 103.6 ? 18 O ? N HOH . ? P HOH 204 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 93.2 ? 19 O ? D THR 101 ? A THR 101 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 91.3 ? 20 O ? D VAL 103 ? A VAL 103 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 85.7 ? 21 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? P HOH . ? A HOH 576 ? 1_555 83.3 ? 22 O ? N HOH . ? P HOH 204 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? P HOH . ? A HOH 576 ? 1_555 95.7 ? 23 O ? D THR 101 ? A THR 101 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? P HOH . ? A HOH 576 ? 1_555 83.0 ? 24 O ? D VAL 103 ? A VAL 103 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? P HOH . ? A HOH 576 ? 1_555 84.8 ? 25 O ? D ILE 106 ? A ILE 106 ? 1_555 NA ? K NA . ? A NA 404 ? 1_555 O ? P HOH . ? A HOH 576 ? 1_555 168.6 ? 26 "O3'" ? B DC 10 ? P DC 10 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 OD2 ? D ASP 190 ? A ASP 190 ? 1_555 160.7 ? 27 "O3'" ? B DC 10 ? P DC 10 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 OD1 ? D ASP 192 ? A ASP 192 ? 1_555 91.7 ? 28 OD2 ? D ASP 190 ? A ASP 190 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 OD1 ? D ASP 192 ? A ASP 192 ? 1_555 105.2 ? 29 "O3'" ? B DC 10 ? P DC 10 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 OD2 ? D ASP 256 ? A ASP 256 ? 1_555 73.6 ? 30 OD2 ? D ASP 190 ? A ASP 190 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 OD2 ? D ASP 256 ? A ASP 256 ? 1_555 96.1 ? 31 OD1 ? D ASP 192 ? A ASP 192 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 OD2 ? D ASP 256 ? A ASP 256 ? 1_555 92.5 ? 32 "O3'" ? B DC 10 ? P DC 10 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 O1A ? J 8DG . ? A 8DG 403 ? 1_555 95.5 ? 33 OD2 ? D ASP 190 ? A ASP 190 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 O1A ? J 8DG . ? A 8DG 403 ? 1_555 94.2 ? 34 OD1 ? D ASP 192 ? A ASP 192 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 O1A ? J 8DG . ? A 8DG 403 ? 1_555 88.1 ? 35 OD2 ? D ASP 256 ? A ASP 256 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 O1A ? J 8DG . ? A 8DG 403 ? 1_555 169.1 ? 36 "O3'" ? B DC 10 ? P DC 10 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 O ? P HOH . ? A HOH 574 ? 1_555 89.7 ? 37 OD2 ? D ASP 190 ? A ASP 190 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 O ? P HOH . ? A HOH 574 ? 1_555 73.6 ? 38 OD1 ? D ASP 192 ? A ASP 192 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 O ? P HOH . ? A HOH 574 ? 1_555 177.9 ? 39 OD2 ? D ASP 256 ? A ASP 256 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 O ? P HOH . ? A HOH 574 ? 1_555 89.3 ? 40 O1A ? J 8DG . ? A 8DG 403 ? 1_555 MN ? H MN . ? A MN 401 ? 1_555 O ? P HOH . ? A HOH 574 ? 1_555 90.3 ? 41 O ? N HOH . ? P HOH 208 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O2A ? J 8DG . ? A 8DG 403 ? 1_555 82.5 ? 42 O ? N HOH . ? P HOH 208 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O ? P HOH . ? A HOH 541 ? 1_555 84.3 ? 43 O2A ? J 8DG . ? A 8DG 403 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O ? P HOH . ? A HOH 541 ? 1_555 110.3 ? 44 O ? N HOH . ? P HOH 208 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O ? P HOH . ? A HOH 571 ? 1_555 161.0 ? 45 O2A ? J 8DG . ? A 8DG 403 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O ? P HOH . ? A HOH 571 ? 1_555 102.2 ? 46 O ? P HOH . ? A HOH 541 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O ? P HOH . ? A HOH 571 ? 1_555 110.6 ? 47 O ? N HOH . ? P HOH 208 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O ? P HOH . ? A HOH 572 ? 1_555 86.6 ? 48 O2A ? J 8DG . ? A 8DG 403 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O ? P HOH . ? A HOH 572 ? 1_555 88.6 ? 49 O ? P HOH . ? A HOH 541 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O ? P HOH . ? A HOH 572 ? 1_555 157.6 ? 50 O ? P HOH . ? A HOH 571 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O ? P HOH . ? A HOH 572 ? 1_555 75.3 ? 51 O ? N HOH . ? P HOH 208 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O ? P HOH . ? A HOH 573 ? 1_555 90.6 ? 52 O2A ? J 8DG . ? A 8DG 403 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O ? P HOH . ? A HOH 573 ? 1_555 172.9 ? 53 O ? P HOH . ? A HOH 541 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O ? P HOH . ? A HOH 573 ? 1_555 67.3 ? 54 O ? P HOH . ? A HOH 571 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O ? P HOH . ? A HOH 573 ? 1_555 84.9 ? 55 O ? P HOH . ? A HOH 572 ? 1_555 MN ? F MN . ? P MN 101 ? 1_555 O ? P HOH . ? A HOH 573 ? 1_555 92.5 ? 56 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? L NA . ? A NA 405 ? 1_555 O ? O HOH . ? D HOH 102 ? 1_555 84.3 ? 57 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? L NA . ? A NA 405 ? 1_555 O ? D LYS 60 ? A LYS 60 ? 1_555 160.0 ? 58 O ? O HOH . ? D HOH 102 ? 1_555 NA ? L NA . ? A NA 405 ? 1_555 O ? D LYS 60 ? A LYS 60 ? 1_555 89.3 ? 59 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? L NA . ? A NA 405 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 91.5 ? 60 O ? O HOH . ? D HOH 102 ? 1_555 NA ? L NA . ? A NA 405 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 169.3 ? 61 O ? D LYS 60 ? A LYS 60 ? 1_555 NA ? L NA . ? A NA 405 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 91.3 ? 62 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? L NA . ? A NA 405 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 72.4 ? 63 O ? O HOH . ? D HOH 102 ? 1_555 NA ? L NA . ? A NA 405 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 89.6 ? 64 O ? D LYS 60 ? A LYS 60 ? 1_555 NA ? L NA . ? A NA 405 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 88.7 ? 65 O ? D LEU 62 ? A LEU 62 ? 1_555 NA ? L NA . ? A NA 405 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 79.7 ? 66 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 92.7 ? 67 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 O1B ? J 8DG . ? A 8DG 403 ? 1_555 169.3 ? 68 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 O1B ? J 8DG . ? A 8DG 403 ? 1_555 92.4 ? 69 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 O3G ? J 8DG . ? A 8DG 403 ? 1_555 82.3 ? 70 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 O3G ? J 8DG . ? A 8DG 403 ? 1_555 174.5 ? 71 O1B ? J 8DG . ? A 8DG 403 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 O3G ? J 8DG . ? A 8DG 403 ? 1_555 92.2 ? 72 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 O1A ? J 8DG . ? A 8DG 403 ? 1_555 97.3 ? 73 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 O1A ? J 8DG . ? A 8DG 403 ? 1_555 86.0 ? 74 O1B ? J 8DG . ? A 8DG 403 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 O1A ? J 8DG . ? A 8DG 403 ? 1_555 92.5 ? 75 O3G ? J 8DG . ? A 8DG 403 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 O1A ? J 8DG . ? A 8DG 403 ? 1_555 96.8 ? 76 OD1 ? D ASP 190 ? A ASP 190 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 O ? P HOH . ? A HOH 575 ? 1_555 91.9 ? 77 OD2 ? D ASP 192 ? A ASP 192 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 O ? P HOH . ? A HOH 575 ? 1_555 83.2 ? 78 O1B ? J 8DG . ? A 8DG 403 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 O ? P HOH . ? A HOH 575 ? 1_555 79.4 ? 79 O3G ? J 8DG . ? A 8DG 403 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 O ? P HOH . ? A HOH 575 ? 1_555 94.8 ? 80 O1A ? J 8DG . ? A 8DG 403 ? 1_555 MN ? I MN . ? A MN 402 ? 1_555 O ? P HOH . ? A HOH 575 ? 1_555 166.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-11-12 2 'Structure model' 1 1 2014-12-03 3 'Structure model' 1 2 2015-02-04 4 'Structure model' 1 3 2019-11-27 5 'Structure model' 1 4 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Author supporting evidence' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' Other 8 4 'Structure model' 'Source and taxonomy' 9 5 'Structure model' Advisory 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Database references' 12 5 'Structure model' 'Derived calculations' 13 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' entity_src_gen 3 4 'Structure model' pdbx_audit_support 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_entity_src_syn 6 4 'Structure model' pdbx_struct_assembly 7 4 'Structure model' pdbx_struct_assembly_gen 8 4 'Structure model' pdbx_struct_assembly_prop 9 4 'Structure model' pdbx_struct_oper_list 10 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 11 5 'Structure model' chem_comp_atom 12 5 'Structure model' chem_comp_bond 13 5 'Structure model' database_2 14 5 'Structure model' pdbx_initial_refinement_model 15 5 'Structure model' pdbx_struct_conn_angle 16 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 17 5 'Structure model' refine_hist 18 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_id_CSD' 2 4 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 3 4 'Structure model' '_pdbx_database_status.pdb_format_compatible' 4 4 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 5 4 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 6 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 7 4 'Structure model' '_pdbx_struct_assembly_prop.type' 8 4 'Structure model' '_pdbx_struct_assembly_prop.value' 9 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 28 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 29 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 30 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 31 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 32 5 'Structure model' '_pdbx_struct_conn_angle.value' 33 5 'Structure model' '_struct_conn.pdbx_dist_value' 34 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 35 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 36 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 37 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 38 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 39 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 40 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 41 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 42 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 43 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 44 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 45 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 46 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 47 5 'Structure model' '_struct_conn.ptnr2_symmetry' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version '(phenix.refine: 1.7_650)' _software.pdbx_ordinal 1 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 T _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 3 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 T _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 3 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 T _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.14 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 1.84 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 170 ? ? -172.11 130.94 2 1 CYS A 178 ? ? -113.89 -143.99 3 1 ASP A 190 ? ? -164.27 -167.15 4 1 GLU A 295 ? ? -67.23 1.39 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 71 ? CG ? D GLU 71 CG 2 1 Y 1 A GLU 71 ? CD ? D GLU 71 CD 3 1 Y 1 A GLU 71 ? OE1 ? D GLU 71 OE1 4 1 Y 1 A GLU 71 ? OE2 ? D GLU 71 OE2 5 1 Y 1 A GLN 90 ? CG ? D GLN 90 CG 6 1 Y 1 A GLN 90 ? CD ? D GLN 90 CD 7 1 Y 1 A GLN 90 ? OE1 ? D GLN 90 OE1 8 1 Y 1 A GLN 90 ? NE2 ? D GLN 90 NE2 9 1 Y 0 A ASP 160 ? N B D ASP 160 N 10 1 Y 0 A ASP 160 ? CA B D ASP 160 CA 11 1 Y 0 A ASP 160 ? C B D ASP 160 C 12 1 Y 0 A ASP 160 ? O B D ASP 160 O 13 1 Y 0 A ASP 160 ? CB B D ASP 160 CB 14 1 Y 0 A ASP 160 ? CG B D ASP 160 CG 15 1 Y 0 A ASP 160 ? OD1 B D ASP 160 OD1 16 1 Y 0 A ASP 160 ? OD2 B D ASP 160 OD2 17 1 Y 1 A PRO 300 ? CG ? D PRO 300 CG 18 1 Y 1 A PRO 300 ? CD ? D PRO 300 CD 19 1 Y 1 A GLN 324 ? CG ? D GLN 324 CG 20 1 Y 1 A GLN 324 ? CD ? D GLN 324 CD 21 1 Y 1 A GLN 324 ? OE1 ? D GLN 324 OE1 22 1 Y 1 A GLN 324 ? NE2 ? D GLN 324 NE2 23 1 Y 1 A TRP 325 ? CG ? D TRP 325 CG 24 1 Y 1 A TRP 325 ? CD1 ? D TRP 325 CD1 25 1 Y 1 A TRP 325 ? CD2 ? D TRP 325 CD2 26 1 Y 1 A TRP 325 ? NE1 ? D TRP 325 NE1 27 1 Y 1 A TRP 325 ? CE2 ? D TRP 325 CE2 28 1 Y 1 A TRP 325 ? CE3 ? D TRP 325 CE3 29 1 Y 1 A TRP 325 ? CZ2 ? D TRP 325 CZ2 30 1 Y 1 A TRP 325 ? CZ3 ? D TRP 325 CZ3 31 1 Y 1 A TRP 325 ? CH2 ? D TRP 325 CH2 32 1 Y 1 A LYS 326 ? CG ? D LYS 326 CG 33 1 Y 1 A LYS 326 ? CD ? D LYS 326 CD 34 1 Y 1 A LYS 326 ? CE ? D LYS 326 CE 35 1 Y 1 A LYS 326 ? NZ ? D LYS 326 NZ 36 1 Y 1 A LYS 331 ? CG ? D LYS 331 CG 37 1 Y 1 A LYS 331 ? CD ? D LYS 331 CD 38 1 Y 1 A LYS 331 ? CE ? D LYS 331 CE 39 1 Y 1 A LYS 331 ? NZ ? D LYS 331 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? D MET 1 2 1 Y 1 A SER 2 ? D SER 2 3 1 Y 1 A LYS 3 ? D LYS 3 4 1 Y 1 A ARG 4 ? D ARG 4 5 1 Y 1 A LYS 5 ? D LYS 5 6 1 Y 1 A ALA 6 ? D ALA 6 7 1 Y 1 A PRO 7 ? D PRO 7 8 1 Y 1 A GLN 8 ? D GLN 8 9 1 Y 1 A GLU 9 ? D GLU 9 10 1 Y 1 A THR 205 ? D THR 205 11 1 Y 1 A LYS 206 ? D LYS 206 12 1 Y 1 A GLN 207 ? D GLN 207 13 1 Y 1 A PRO 208 ? D PRO 208 14 1 Y 1 A LYS 244 ? D LYS 244 15 1 Y 1 A ASN 245 ? D ASN 245 16 1 Y 1 A ASP 246 ? D ASP 246 17 1 Y 1 A GLU 247 ? D GLU 247 18 1 Y 1 A LYS 248 ? D LYS 248 19 1 Y 1 A LEU 301 ? D LEU 301 20 1 Y 1 A GLY 302 ? D GLY 302 21 1 Y 1 A VAL 303 ? D VAL 303 22 1 Y 1 A THR 304 ? D THR 304 23 1 Y 1 A GLY 305 ? D GLY 305 24 1 Y 1 A VAL 306 ? D VAL 306 25 1 Y 1 A ALA 307 ? D ALA 307 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 8DG PG P N N 1 8DG O1G O N N 2 8DG O2G O N N 3 8DG O3G O N N 4 8DG O3B O N N 5 8DG PB P N S 6 8DG O1B O N N 7 8DG O2B O N N 8 8DG O3A O N N 9 8DG PA P N R 10 8DG O1A O N N 11 8DG O2A O N N 12 8DG "O5'" O N N 13 8DG "C5'" C N N 14 8DG "C4'" C N R 15 8DG "O4'" O N N 16 8DG "C3'" C N S 17 8DG "O3'" O N N 18 8DG "C2'" C N N 19 8DG "C1'" C N R 20 8DG N9 N N N 21 8DG C8 C N N 22 8DG N7 N N N 23 8DG C5 C N N 24 8DG C6 C N N 25 8DG O6 O N N 26 8DG N1 N N N 27 8DG C2 C N N 28 8DG N2 N N N 29 8DG N3 N N N 30 8DG C4 C N N 31 8DG O8 O N N 32 8DG HOG2 H N N 33 8DG H3G H N N 34 8DG HOB2 H N N 35 8DG HOA2 H N N 36 8DG "H5'1" H N N 37 8DG "H5'2" H N N 38 8DG "H4'" H N N 39 8DG "H3'" H N N 40 8DG H1 H N N 41 8DG "H2'1" H N N 42 8DG "H2'2" H N N 43 8DG "H1'" H N N 44 8DG HN7 H N N 45 8DG HN1 H N N 46 8DG HN21 H N N 47 8DG HN22 H N N 48 ALA N N N N 49 ALA CA C N S 50 ALA C C N N 51 ALA O O N N 52 ALA CB C N N 53 ALA OXT O N N 54 ALA H H N N 55 ALA H2 H N N 56 ALA HA H N N 57 ALA HB1 H N N 58 ALA HB2 H N N 59 ALA HB3 H N N 60 ALA HXT H N N 61 ARG N N N N 62 ARG CA C N S 63 ARG C C N N 64 ARG O O N N 65 ARG CB C N N 66 ARG CG C N N 67 ARG CD C N N 68 ARG NE N N N 69 ARG CZ C N N 70 ARG NH1 N N N 71 ARG NH2 N N N 72 ARG OXT O N N 73 ARG H H N N 74 ARG H2 H N N 75 ARG HA H N N 76 ARG HB2 H N N 77 ARG HB3 H N N 78 ARG HG2 H N N 79 ARG HG3 H N N 80 ARG HD2 H N N 81 ARG HD3 H N N 82 ARG HE H N N 83 ARG HH11 H N N 84 ARG HH12 H N N 85 ARG HH21 H N N 86 ARG HH22 H N N 87 ARG HXT H N N 88 ASN N N N N 89 ASN CA C N S 90 ASN C C N N 91 ASN O O N N 92 ASN CB C N N 93 ASN CG C N N 94 ASN OD1 O N N 95 ASN ND2 N N N 96 ASN OXT O N N 97 ASN H H N N 98 ASN H2 H N N 99 ASN HA H N N 100 ASN HB2 H N N 101 ASN HB3 H N N 102 ASN HD21 H N N 103 ASN HD22 H N N 104 ASN HXT H N N 105 ASP N N N N 106 ASP CA C N S 107 ASP C C N N 108 ASP O O N N 109 ASP CB C N N 110 ASP CG C N N 111 ASP OD1 O N N 112 ASP OD2 O N N 113 ASP OXT O N N 114 ASP H H N N 115 ASP H2 H N N 116 ASP HA H N N 117 ASP HB2 H N N 118 ASP HB3 H N N 119 ASP HD2 H N N 120 ASP HXT H N N 121 CYS N N N N 122 CYS CA C N R 123 CYS C C N N 124 CYS O O N N 125 CYS CB C N N 126 CYS SG S N N 127 CYS OXT O N N 128 CYS H H N N 129 CYS H2 H N N 130 CYS HA H N N 131 CYS HB2 H N N 132 CYS HB3 H N N 133 CYS HG H N N 134 CYS HXT H N N 135 DA OP3 O N N 136 DA P P N N 137 DA OP1 O N N 138 DA OP2 O N N 139 DA "O5'" O N N 140 DA "C5'" C N N 141 DA "C4'" C N R 142 DA "O4'" O N N 143 DA "C3'" C N S 144 DA "O3'" O N N 145 DA "C2'" C N N 146 DA "C1'" C N R 147 DA N9 N Y N 148 DA C8 C Y N 149 DA N7 N Y N 150 DA C5 C Y N 151 DA C6 C Y N 152 DA N6 N N N 153 DA N1 N Y N 154 DA C2 C Y N 155 DA N3 N Y N 156 DA C4 C Y N 157 DA HOP3 H N N 158 DA HOP2 H N N 159 DA "H5'" H N N 160 DA "H5''" H N N 161 DA "H4'" H N N 162 DA "H3'" H N N 163 DA "HO3'" H N N 164 DA "H2'" H N N 165 DA "H2''" H N N 166 DA "H1'" H N N 167 DA H8 H N N 168 DA H61 H N N 169 DA H62 H N N 170 DA H2 H N N 171 DC OP3 O N N 172 DC P P N N 173 DC OP1 O N N 174 DC OP2 O N N 175 DC "O5'" O N N 176 DC "C5'" C N N 177 DC "C4'" C N R 178 DC "O4'" O N N 179 DC "C3'" C N S 180 DC "O3'" O N N 181 DC "C2'" C N N 182 DC "C1'" C N R 183 DC N1 N N N 184 DC C2 C N N 185 DC O2 O N N 186 DC N3 N N N 187 DC C4 C N N 188 DC N4 N N N 189 DC C5 C N N 190 DC C6 C N N 191 DC HOP3 H N N 192 DC HOP2 H N N 193 DC "H5'" H N N 194 DC "H5''" H N N 195 DC "H4'" H N N 196 DC "H3'" H N N 197 DC "HO3'" H N N 198 DC "H2'" H N N 199 DC "H2''" H N N 200 DC "H1'" H N N 201 DC H41 H N N 202 DC H42 H N N 203 DC H5 H N N 204 DC H6 H N N 205 DG OP3 O N N 206 DG P P N N 207 DG OP1 O N N 208 DG OP2 O N N 209 DG "O5'" O N N 210 DG "C5'" C N N 211 DG "C4'" C N R 212 DG "O4'" O N N 213 DG "C3'" C N S 214 DG "O3'" O N N 215 DG "C2'" C N N 216 DG "C1'" C N R 217 DG N9 N Y N 218 DG C8 C Y N 219 DG N7 N Y N 220 DG C5 C Y N 221 DG C6 C N N 222 DG O6 O N N 223 DG N1 N N N 224 DG C2 C N N 225 DG N2 N N N 226 DG N3 N N N 227 DG C4 C Y N 228 DG HOP3 H N N 229 DG HOP2 H N N 230 DG "H5'" H N N 231 DG "H5''" H N N 232 DG "H4'" H N N 233 DG "H3'" H N N 234 DG "HO3'" H N N 235 DG "H2'" H N N 236 DG "H2''" H N N 237 DG "H1'" H N N 238 DG H8 H N N 239 DG H1 H N N 240 DG H21 H N N 241 DG H22 H N N 242 DT OP3 O N N 243 DT P P N N 244 DT OP1 O N N 245 DT OP2 O N N 246 DT "O5'" O N N 247 DT "C5'" C N N 248 DT "C4'" C N R 249 DT "O4'" O N N 250 DT "C3'" C N S 251 DT "O3'" O N N 252 DT "C2'" C N N 253 DT "C1'" C N R 254 DT N1 N N N 255 DT C2 C N N 256 DT O2 O N N 257 DT N3 N N N 258 DT C4 C N N 259 DT O4 O N N 260 DT C5 C N N 261 DT C7 C N N 262 DT C6 C N N 263 DT HOP3 H N N 264 DT HOP2 H N N 265 DT "H5'" H N N 266 DT "H5''" H N N 267 DT "H4'" H N N 268 DT "H3'" H N N 269 DT "HO3'" H N N 270 DT "H2'" H N N 271 DT "H2''" H N N 272 DT "H1'" H N N 273 DT H3 H N N 274 DT H71 H N N 275 DT H72 H N N 276 DT H73 H N N 277 DT H6 H N N 278 GLN N N N N 279 GLN CA C N S 280 GLN C C N N 281 GLN O O N N 282 GLN CB C N N 283 GLN CG C N N 284 GLN CD C N N 285 GLN OE1 O N N 286 GLN NE2 N N N 287 GLN OXT O N N 288 GLN H H N N 289 GLN H2 H N N 290 GLN HA H N N 291 GLN HB2 H N N 292 GLN HB3 H N N 293 GLN HG2 H N N 294 GLN HG3 H N N 295 GLN HE21 H N N 296 GLN HE22 H N N 297 GLN HXT H N N 298 GLU N N N N 299 GLU CA C N S 300 GLU C C N N 301 GLU O O N N 302 GLU CB C N N 303 GLU CG C N N 304 GLU CD C N N 305 GLU OE1 O N N 306 GLU OE2 O N N 307 GLU OXT O N N 308 GLU H H N N 309 GLU H2 H N N 310 GLU HA H N N 311 GLU HB2 H N N 312 GLU HB3 H N N 313 GLU HG2 H N N 314 GLU HG3 H N N 315 GLU HE2 H N N 316 GLU HXT H N N 317 GLY N N N N 318 GLY CA C N N 319 GLY C C N N 320 GLY O O N N 321 GLY OXT O N N 322 GLY H H N N 323 GLY H2 H N N 324 GLY HA2 H N N 325 GLY HA3 H N N 326 GLY HXT H N N 327 HIS N N N N 328 HIS CA C N S 329 HIS C C N N 330 HIS O O N N 331 HIS CB C N N 332 HIS CG C Y N 333 HIS ND1 N Y N 334 HIS CD2 C Y N 335 HIS CE1 C Y N 336 HIS NE2 N Y N 337 HIS OXT O N N 338 HIS H H N N 339 HIS H2 H N N 340 HIS HA H N N 341 HIS HB2 H N N 342 HIS HB3 H N N 343 HIS HD1 H N N 344 HIS HD2 H N N 345 HIS HE1 H N N 346 HIS HE2 H N N 347 HIS HXT H N N 348 HOH O O N N 349 HOH H1 H N N 350 HOH H2 H N N 351 ILE N N N N 352 ILE CA C N S 353 ILE C C N N 354 ILE O O N N 355 ILE CB C N S 356 ILE CG1 C N N 357 ILE CG2 C N N 358 ILE CD1 C N N 359 ILE OXT O N N 360 ILE H H N N 361 ILE H2 H N N 362 ILE HA H N N 363 ILE HB H N N 364 ILE HG12 H N N 365 ILE HG13 H N N 366 ILE HG21 H N N 367 ILE HG22 H N N 368 ILE HG23 H N N 369 ILE HD11 H N N 370 ILE HD12 H N N 371 ILE HD13 H N N 372 ILE HXT H N N 373 LEU N N N N 374 LEU CA C N S 375 LEU C C N N 376 LEU O O N N 377 LEU CB C N N 378 LEU CG C N N 379 LEU CD1 C N N 380 LEU CD2 C N N 381 LEU OXT O N N 382 LEU H H N N 383 LEU H2 H N N 384 LEU HA H N N 385 LEU HB2 H N N 386 LEU HB3 H N N 387 LEU HG H N N 388 LEU HD11 H N N 389 LEU HD12 H N N 390 LEU HD13 H N N 391 LEU HD21 H N N 392 LEU HD22 H N N 393 LEU HD23 H N N 394 LEU HXT H N N 395 LYS N N N N 396 LYS CA C N S 397 LYS C C N N 398 LYS O O N N 399 LYS CB C N N 400 LYS CG C N N 401 LYS CD C N N 402 LYS CE C N N 403 LYS NZ N N N 404 LYS OXT O N N 405 LYS H H N N 406 LYS H2 H N N 407 LYS HA H N N 408 LYS HB2 H N N 409 LYS HB3 H N N 410 LYS HG2 H N N 411 LYS HG3 H N N 412 LYS HD2 H N N 413 LYS HD3 H N N 414 LYS HE2 H N N 415 LYS HE3 H N N 416 LYS HZ1 H N N 417 LYS HZ2 H N N 418 LYS HZ3 H N N 419 LYS HXT H N N 420 MET N N N N 421 MET CA C N S 422 MET C C N N 423 MET O O N N 424 MET CB C N N 425 MET CG C N N 426 MET SD S N N 427 MET CE C N N 428 MET OXT O N N 429 MET H H N N 430 MET H2 H N N 431 MET HA H N N 432 MET HB2 H N N 433 MET HB3 H N N 434 MET HG2 H N N 435 MET HG3 H N N 436 MET HE1 H N N 437 MET HE2 H N N 438 MET HE3 H N N 439 MET HXT H N N 440 MN MN MN N N 441 NA NA NA N N 442 PHE N N N N 443 PHE CA C N S 444 PHE C C N N 445 PHE O O N N 446 PHE CB C N N 447 PHE CG C Y N 448 PHE CD1 C Y N 449 PHE CD2 C Y N 450 PHE CE1 C Y N 451 PHE CE2 C Y N 452 PHE CZ C Y N 453 PHE OXT O N N 454 PHE H H N N 455 PHE H2 H N N 456 PHE HA H N N 457 PHE HB2 H N N 458 PHE HB3 H N N 459 PHE HD1 H N N 460 PHE HD2 H N N 461 PHE HE1 H N N 462 PHE HE2 H N N 463 PHE HZ H N N 464 PHE HXT H N N 465 PRO N N N N 466 PRO CA C N S 467 PRO C C N N 468 PRO O O N N 469 PRO CB C N N 470 PRO CG C N N 471 PRO CD C N N 472 PRO OXT O N N 473 PRO H H N N 474 PRO HA H N N 475 PRO HB2 H N N 476 PRO HB3 H N N 477 PRO HG2 H N N 478 PRO HG3 H N N 479 PRO HD2 H N N 480 PRO HD3 H N N 481 PRO HXT H N N 482 SER N N N N 483 SER CA C N S 484 SER C C N N 485 SER O O N N 486 SER CB C N N 487 SER OG O N N 488 SER OXT O N N 489 SER H H N N 490 SER H2 H N N 491 SER HA H N N 492 SER HB2 H N N 493 SER HB3 H N N 494 SER HG H N N 495 SER HXT H N N 496 THR N N N N 497 THR CA C N S 498 THR C C N N 499 THR O O N N 500 THR CB C N R 501 THR OG1 O N N 502 THR CG2 C N N 503 THR OXT O N N 504 THR H H N N 505 THR H2 H N N 506 THR HA H N N 507 THR HB H N N 508 THR HG1 H N N 509 THR HG21 H N N 510 THR HG22 H N N 511 THR HG23 H N N 512 THR HXT H N N 513 TRP N N N N 514 TRP CA C N S 515 TRP C C N N 516 TRP O O N N 517 TRP CB C N N 518 TRP CG C Y N 519 TRP CD1 C Y N 520 TRP CD2 C Y N 521 TRP NE1 N Y N 522 TRP CE2 C Y N 523 TRP CE3 C Y N 524 TRP CZ2 C Y N 525 TRP CZ3 C Y N 526 TRP CH2 C Y N 527 TRP OXT O N N 528 TRP H H N N 529 TRP H2 H N N 530 TRP HA H N N 531 TRP HB2 H N N 532 TRP HB3 H N N 533 TRP HD1 H N N 534 TRP HE1 H N N 535 TRP HE3 H N N 536 TRP HZ2 H N N 537 TRP HZ3 H N N 538 TRP HH2 H N N 539 TRP HXT H N N 540 TYR N N N N 541 TYR CA C N S 542 TYR C C N N 543 TYR O O N N 544 TYR CB C N N 545 TYR CG C Y N 546 TYR CD1 C Y N 547 TYR CD2 C Y N 548 TYR CE1 C Y N 549 TYR CE2 C Y N 550 TYR CZ C Y N 551 TYR OH O N N 552 TYR OXT O N N 553 TYR H H N N 554 TYR H2 H N N 555 TYR HA H N N 556 TYR HB2 H N N 557 TYR HB3 H N N 558 TYR HD1 H N N 559 TYR HD2 H N N 560 TYR HE1 H N N 561 TYR HE2 H N N 562 TYR HH H N N 563 TYR HXT H N N 564 VAL N N N N 565 VAL CA C N S 566 VAL C C N N 567 VAL O O N N 568 VAL CB C N N 569 VAL CG1 C N N 570 VAL CG2 C N N 571 VAL OXT O N N 572 VAL H H N N 573 VAL H2 H N N 574 VAL HA H N N 575 VAL HB H N N 576 VAL HG11 H N N 577 VAL HG12 H N N 578 VAL HG13 H N N 579 VAL HG21 H N N 580 VAL HG22 H N N 581 VAL HG23 H N N 582 VAL HXT H N N 583 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8DG PG O1G doub N N 1 8DG PG O2G sing N N 2 8DG PG O3G sing N N 3 8DG PG O3B sing N N 4 8DG O2G HOG2 sing N N 5 8DG O3G H3G sing N N 6 8DG O3B PB sing N N 7 8DG PB O1B doub N N 8 8DG PB O2B sing N N 9 8DG PB O3A sing N N 10 8DG O2B HOB2 sing N N 11 8DG O3A PA sing N N 12 8DG PA O1A doub N N 13 8DG PA O2A sing N N 14 8DG PA "O5'" sing N N 15 8DG O2A HOA2 sing N N 16 8DG "O5'" "C5'" sing N N 17 8DG "C5'" "C4'" sing N N 18 8DG "C5'" "H5'1" sing N N 19 8DG "C5'" "H5'2" sing N N 20 8DG "C4'" "O4'" sing N N 21 8DG "C4'" "C3'" sing N N 22 8DG "C4'" "H4'" sing N N 23 8DG "O4'" "C1'" sing N N 24 8DG "C3'" "O3'" sing N N 25 8DG "C3'" "C2'" sing N N 26 8DG "C3'" "H3'" sing N N 27 8DG "O3'" H1 sing N N 28 8DG "C2'" "C1'" sing N N 29 8DG "C2'" "H2'1" sing N N 30 8DG "C2'" "H2'2" sing N N 31 8DG "C1'" N9 sing N N 32 8DG "C1'" "H1'" sing N N 33 8DG N9 C8 sing N N 34 8DG N9 C4 sing N N 35 8DG C8 N7 sing N N 36 8DG C8 O8 doub N N 37 8DG N7 C5 sing N N 38 8DG N7 HN7 sing N N 39 8DG C5 C6 sing N N 40 8DG C5 C4 doub N N 41 8DG C6 O6 doub N N 42 8DG C6 N1 sing N N 43 8DG N1 C2 sing N N 44 8DG N1 HN1 sing N N 45 8DG C2 N2 sing N N 46 8DG C2 N3 doub N N 47 8DG N2 HN21 sing N N 48 8DG N2 HN22 sing N N 49 8DG N3 C4 sing N N 50 ALA N CA sing N N 51 ALA N H sing N N 52 ALA N H2 sing N N 53 ALA CA C sing N N 54 ALA CA CB sing N N 55 ALA CA HA sing N N 56 ALA C O doub N N 57 ALA C OXT sing N N 58 ALA CB HB1 sing N N 59 ALA CB HB2 sing N N 60 ALA CB HB3 sing N N 61 ALA OXT HXT sing N N 62 ARG N CA sing N N 63 ARG N H sing N N 64 ARG N H2 sing N N 65 ARG CA C sing N N 66 ARG CA CB sing N N 67 ARG CA HA sing N N 68 ARG C O doub N N 69 ARG C OXT sing N N 70 ARG CB CG sing N N 71 ARG CB HB2 sing N N 72 ARG CB HB3 sing N N 73 ARG CG CD sing N N 74 ARG CG HG2 sing N N 75 ARG CG HG3 sing N N 76 ARG CD NE sing N N 77 ARG CD HD2 sing N N 78 ARG CD HD3 sing N N 79 ARG NE CZ sing N N 80 ARG NE HE sing N N 81 ARG CZ NH1 sing N N 82 ARG CZ NH2 doub N N 83 ARG NH1 HH11 sing N N 84 ARG NH1 HH12 sing N N 85 ARG NH2 HH21 sing N N 86 ARG NH2 HH22 sing N N 87 ARG OXT HXT sing N N 88 ASN N CA sing N N 89 ASN N H sing N N 90 ASN N H2 sing N N 91 ASN CA C sing N N 92 ASN CA CB sing N N 93 ASN CA HA sing N N 94 ASN C O doub N N 95 ASN C OXT sing N N 96 ASN CB CG sing N N 97 ASN CB HB2 sing N N 98 ASN CB HB3 sing N N 99 ASN CG OD1 doub N N 100 ASN CG ND2 sing N N 101 ASN ND2 HD21 sing N N 102 ASN ND2 HD22 sing N N 103 ASN OXT HXT sing N N 104 ASP N CA sing N N 105 ASP N H sing N N 106 ASP N H2 sing N N 107 ASP CA C sing N N 108 ASP CA CB sing N N 109 ASP CA HA sing N N 110 ASP C O doub N N 111 ASP C OXT sing N N 112 ASP CB CG sing N N 113 ASP CB HB2 sing N N 114 ASP CB HB3 sing N N 115 ASP CG OD1 doub N N 116 ASP CG OD2 sing N N 117 ASP OD2 HD2 sing N N 118 ASP OXT HXT sing N N 119 CYS N CA sing N N 120 CYS N H sing N N 121 CYS N H2 sing N N 122 CYS CA C sing N N 123 CYS CA CB sing N N 124 CYS CA HA sing N N 125 CYS C O doub N N 126 CYS C OXT sing N N 127 CYS CB SG sing N N 128 CYS CB HB2 sing N N 129 CYS CB HB3 sing N N 130 CYS SG HG sing N N 131 CYS OXT HXT sing N N 132 DA OP3 P sing N N 133 DA OP3 HOP3 sing N N 134 DA P OP1 doub N N 135 DA P OP2 sing N N 136 DA P "O5'" sing N N 137 DA OP2 HOP2 sing N N 138 DA "O5'" "C5'" sing N N 139 DA "C5'" "C4'" sing N N 140 DA "C5'" "H5'" sing N N 141 DA "C5'" "H5''" sing N N 142 DA "C4'" "O4'" sing N N 143 DA "C4'" "C3'" sing N N 144 DA "C4'" "H4'" sing N N 145 DA "O4'" "C1'" sing N N 146 DA "C3'" "O3'" sing N N 147 DA "C3'" "C2'" sing N N 148 DA "C3'" "H3'" sing N N 149 DA "O3'" "HO3'" sing N N 150 DA "C2'" "C1'" sing N N 151 DA "C2'" "H2'" sing N N 152 DA "C2'" "H2''" sing N N 153 DA "C1'" N9 sing N N 154 DA "C1'" "H1'" sing N N 155 DA N9 C8 sing Y N 156 DA N9 C4 sing Y N 157 DA C8 N7 doub Y N 158 DA C8 H8 sing N N 159 DA N7 C5 sing Y N 160 DA C5 C6 sing Y N 161 DA C5 C4 doub Y N 162 DA C6 N6 sing N N 163 DA C6 N1 doub Y N 164 DA N6 H61 sing N N 165 DA N6 H62 sing N N 166 DA N1 C2 sing Y N 167 DA C2 N3 doub Y N 168 DA C2 H2 sing N N 169 DA N3 C4 sing Y N 170 DC OP3 P sing N N 171 DC OP3 HOP3 sing N N 172 DC P OP1 doub N N 173 DC P OP2 sing N N 174 DC P "O5'" sing N N 175 DC OP2 HOP2 sing N N 176 DC "O5'" "C5'" sing N N 177 DC "C5'" "C4'" sing N N 178 DC "C5'" "H5'" sing N N 179 DC "C5'" "H5''" sing N N 180 DC "C4'" "O4'" sing N N 181 DC "C4'" "C3'" sing N N 182 DC "C4'" "H4'" sing N N 183 DC "O4'" "C1'" sing N N 184 DC "C3'" "O3'" sing N N 185 DC "C3'" "C2'" sing N N 186 DC "C3'" "H3'" sing N N 187 DC "O3'" "HO3'" sing N N 188 DC "C2'" "C1'" sing N N 189 DC "C2'" "H2'" sing N N 190 DC "C2'" "H2''" sing N N 191 DC "C1'" N1 sing N N 192 DC "C1'" "H1'" sing N N 193 DC N1 C2 sing N N 194 DC N1 C6 sing N N 195 DC C2 O2 doub N N 196 DC C2 N3 sing N N 197 DC N3 C4 doub N N 198 DC C4 N4 sing N N 199 DC C4 C5 sing N N 200 DC N4 H41 sing N N 201 DC N4 H42 sing N N 202 DC C5 C6 doub N N 203 DC C5 H5 sing N N 204 DC C6 H6 sing N N 205 DG OP3 P sing N N 206 DG OP3 HOP3 sing N N 207 DG P OP1 doub N N 208 DG P OP2 sing N N 209 DG P "O5'" sing N N 210 DG OP2 HOP2 sing N N 211 DG "O5'" "C5'" sing N N 212 DG "C5'" "C4'" sing N N 213 DG "C5'" "H5'" sing N N 214 DG "C5'" "H5''" sing N N 215 DG "C4'" "O4'" sing N N 216 DG "C4'" "C3'" sing N N 217 DG "C4'" "H4'" sing N N 218 DG "O4'" "C1'" sing N N 219 DG "C3'" "O3'" sing N N 220 DG "C3'" "C2'" sing N N 221 DG "C3'" "H3'" sing N N 222 DG "O3'" "HO3'" sing N N 223 DG "C2'" "C1'" sing N N 224 DG "C2'" "H2'" sing N N 225 DG "C2'" "H2''" sing N N 226 DG "C1'" N9 sing N N 227 DG "C1'" "H1'" sing N N 228 DG N9 C8 sing Y N 229 DG N9 C4 sing Y N 230 DG C8 N7 doub Y N 231 DG C8 H8 sing N N 232 DG N7 C5 sing Y N 233 DG C5 C6 sing N N 234 DG C5 C4 doub Y N 235 DG C6 O6 doub N N 236 DG C6 N1 sing N N 237 DG N1 C2 sing N N 238 DG N1 H1 sing N N 239 DG C2 N2 sing N N 240 DG C2 N3 doub N N 241 DG N2 H21 sing N N 242 DG N2 H22 sing N N 243 DG N3 C4 sing N N 244 DT OP3 P sing N N 245 DT OP3 HOP3 sing N N 246 DT P OP1 doub N N 247 DT P OP2 sing N N 248 DT P "O5'" sing N N 249 DT OP2 HOP2 sing N N 250 DT "O5'" "C5'" sing N N 251 DT "C5'" "C4'" sing N N 252 DT "C5'" "H5'" sing N N 253 DT "C5'" "H5''" sing N N 254 DT "C4'" "O4'" sing N N 255 DT "C4'" "C3'" sing N N 256 DT "C4'" "H4'" sing N N 257 DT "O4'" "C1'" sing N N 258 DT "C3'" "O3'" sing N N 259 DT "C3'" "C2'" sing N N 260 DT "C3'" "H3'" sing N N 261 DT "O3'" "HO3'" sing N N 262 DT "C2'" "C1'" sing N N 263 DT "C2'" "H2'" sing N N 264 DT "C2'" "H2''" sing N N 265 DT "C1'" N1 sing N N 266 DT "C1'" "H1'" sing N N 267 DT N1 C2 sing N N 268 DT N1 C6 sing N N 269 DT C2 O2 doub N N 270 DT C2 N3 sing N N 271 DT N3 C4 sing N N 272 DT N3 H3 sing N N 273 DT C4 O4 doub N N 274 DT C4 C5 sing N N 275 DT C5 C7 sing N N 276 DT C5 C6 doub N N 277 DT C7 H71 sing N N 278 DT C7 H72 sing N N 279 DT C7 H73 sing N N 280 DT C6 H6 sing N N 281 GLN N CA sing N N 282 GLN N H sing N N 283 GLN N H2 sing N N 284 GLN CA C sing N N 285 GLN CA CB sing N N 286 GLN CA HA sing N N 287 GLN C O doub N N 288 GLN C OXT sing N N 289 GLN CB CG sing N N 290 GLN CB HB2 sing N N 291 GLN CB HB3 sing N N 292 GLN CG CD sing N N 293 GLN CG HG2 sing N N 294 GLN CG HG3 sing N N 295 GLN CD OE1 doub N N 296 GLN CD NE2 sing N N 297 GLN NE2 HE21 sing N N 298 GLN NE2 HE22 sing N N 299 GLN OXT HXT sing N N 300 GLU N CA sing N N 301 GLU N H sing N N 302 GLU N H2 sing N N 303 GLU CA C sing N N 304 GLU CA CB sing N N 305 GLU CA HA sing N N 306 GLU C O doub N N 307 GLU C OXT sing N N 308 GLU CB CG sing N N 309 GLU CB HB2 sing N N 310 GLU CB HB3 sing N N 311 GLU CG CD sing N N 312 GLU CG HG2 sing N N 313 GLU CG HG3 sing N N 314 GLU CD OE1 doub N N 315 GLU CD OE2 sing N N 316 GLU OE2 HE2 sing N N 317 GLU OXT HXT sing N N 318 GLY N CA sing N N 319 GLY N H sing N N 320 GLY N H2 sing N N 321 GLY CA C sing N N 322 GLY CA HA2 sing N N 323 GLY CA HA3 sing N N 324 GLY C O doub N N 325 GLY C OXT sing N N 326 GLY OXT HXT sing N N 327 HIS N CA sing N N 328 HIS N H sing N N 329 HIS N H2 sing N N 330 HIS CA C sing N N 331 HIS CA CB sing N N 332 HIS CA HA sing N N 333 HIS C O doub N N 334 HIS C OXT sing N N 335 HIS CB CG sing N N 336 HIS CB HB2 sing N N 337 HIS CB HB3 sing N N 338 HIS CG ND1 sing Y N 339 HIS CG CD2 doub Y N 340 HIS ND1 CE1 doub Y N 341 HIS ND1 HD1 sing N N 342 HIS CD2 NE2 sing Y N 343 HIS CD2 HD2 sing N N 344 HIS CE1 NE2 sing Y N 345 HIS CE1 HE1 sing N N 346 HIS NE2 HE2 sing N N 347 HIS OXT HXT sing N N 348 HOH O H1 sing N N 349 HOH O H2 sing N N 350 ILE N CA sing N N 351 ILE N H sing N N 352 ILE N H2 sing N N 353 ILE CA C sing N N 354 ILE CA CB sing N N 355 ILE CA HA sing N N 356 ILE C O doub N N 357 ILE C OXT sing N N 358 ILE CB CG1 sing N N 359 ILE CB CG2 sing N N 360 ILE CB HB sing N N 361 ILE CG1 CD1 sing N N 362 ILE CG1 HG12 sing N N 363 ILE CG1 HG13 sing N N 364 ILE CG2 HG21 sing N N 365 ILE CG2 HG22 sing N N 366 ILE CG2 HG23 sing N N 367 ILE CD1 HD11 sing N N 368 ILE CD1 HD12 sing N N 369 ILE CD1 HD13 sing N N 370 ILE OXT HXT sing N N 371 LEU N CA sing N N 372 LEU N H sing N N 373 LEU N H2 sing N N 374 LEU CA C sing N N 375 LEU CA CB sing N N 376 LEU CA HA sing N N 377 LEU C O doub N N 378 LEU C OXT sing N N 379 LEU CB CG sing N N 380 LEU CB HB2 sing N N 381 LEU CB HB3 sing N N 382 LEU CG CD1 sing N N 383 LEU CG CD2 sing N N 384 LEU CG HG sing N N 385 LEU CD1 HD11 sing N N 386 LEU CD1 HD12 sing N N 387 LEU CD1 HD13 sing N N 388 LEU CD2 HD21 sing N N 389 LEU CD2 HD22 sing N N 390 LEU CD2 HD23 sing N N 391 LEU OXT HXT sing N N 392 LYS N CA sing N N 393 LYS N H sing N N 394 LYS N H2 sing N N 395 LYS CA C sing N N 396 LYS CA CB sing N N 397 LYS CA HA sing N N 398 LYS C O doub N N 399 LYS C OXT sing N N 400 LYS CB CG sing N N 401 LYS CB HB2 sing N N 402 LYS CB HB3 sing N N 403 LYS CG CD sing N N 404 LYS CG HG2 sing N N 405 LYS CG HG3 sing N N 406 LYS CD CE sing N N 407 LYS CD HD2 sing N N 408 LYS CD HD3 sing N N 409 LYS CE NZ sing N N 410 LYS CE HE2 sing N N 411 LYS CE HE3 sing N N 412 LYS NZ HZ1 sing N N 413 LYS NZ HZ2 sing N N 414 LYS NZ HZ3 sing N N 415 LYS OXT HXT sing N N 416 MET N CA sing N N 417 MET N H sing N N 418 MET N H2 sing N N 419 MET CA C sing N N 420 MET CA CB sing N N 421 MET CA HA sing N N 422 MET C O doub N N 423 MET C OXT sing N N 424 MET CB CG sing N N 425 MET CB HB2 sing N N 426 MET CB HB3 sing N N 427 MET CG SD sing N N 428 MET CG HG2 sing N N 429 MET CG HG3 sing N N 430 MET SD CE sing N N 431 MET CE HE1 sing N N 432 MET CE HE2 sing N N 433 MET CE HE3 sing N N 434 MET OXT HXT sing N N 435 PHE N CA sing N N 436 PHE N H sing N N 437 PHE N H2 sing N N 438 PHE CA C sing N N 439 PHE CA CB sing N N 440 PHE CA HA sing N N 441 PHE C O doub N N 442 PHE C OXT sing N N 443 PHE CB CG sing N N 444 PHE CB HB2 sing N N 445 PHE CB HB3 sing N N 446 PHE CG CD1 doub Y N 447 PHE CG CD2 sing Y N 448 PHE CD1 CE1 sing Y N 449 PHE CD1 HD1 sing N N 450 PHE CD2 CE2 doub Y N 451 PHE CD2 HD2 sing N N 452 PHE CE1 CZ doub Y N 453 PHE CE1 HE1 sing N N 454 PHE CE2 CZ sing Y N 455 PHE CE2 HE2 sing N N 456 PHE CZ HZ sing N N 457 PHE OXT HXT sing N N 458 PRO N CA sing N N 459 PRO N CD sing N N 460 PRO N H sing N N 461 PRO CA C sing N N 462 PRO CA CB sing N N 463 PRO CA HA sing N N 464 PRO C O doub N N 465 PRO C OXT sing N N 466 PRO CB CG sing N N 467 PRO CB HB2 sing N N 468 PRO CB HB3 sing N N 469 PRO CG CD sing N N 470 PRO CG HG2 sing N N 471 PRO CG HG3 sing N N 472 PRO CD HD2 sing N N 473 PRO CD HD3 sing N N 474 PRO OXT HXT sing N N 475 SER N CA sing N N 476 SER N H sing N N 477 SER N H2 sing N N 478 SER CA C sing N N 479 SER CA CB sing N N 480 SER CA HA sing N N 481 SER C O doub N N 482 SER C OXT sing N N 483 SER CB OG sing N N 484 SER CB HB2 sing N N 485 SER CB HB3 sing N N 486 SER OG HG sing N N 487 SER OXT HXT sing N N 488 THR N CA sing N N 489 THR N H sing N N 490 THR N H2 sing N N 491 THR CA C sing N N 492 THR CA CB sing N N 493 THR CA HA sing N N 494 THR C O doub N N 495 THR C OXT sing N N 496 THR CB OG1 sing N N 497 THR CB CG2 sing N N 498 THR CB HB sing N N 499 THR OG1 HG1 sing N N 500 THR CG2 HG21 sing N N 501 THR CG2 HG22 sing N N 502 THR CG2 HG23 sing N N 503 THR OXT HXT sing N N 504 TRP N CA sing N N 505 TRP N H sing N N 506 TRP N H2 sing N N 507 TRP CA C sing N N 508 TRP CA CB sing N N 509 TRP CA HA sing N N 510 TRP C O doub N N 511 TRP C OXT sing N N 512 TRP CB CG sing N N 513 TRP CB HB2 sing N N 514 TRP CB HB3 sing N N 515 TRP CG CD1 doub Y N 516 TRP CG CD2 sing Y N 517 TRP CD1 NE1 sing Y N 518 TRP CD1 HD1 sing N N 519 TRP CD2 CE2 doub Y N 520 TRP CD2 CE3 sing Y N 521 TRP NE1 CE2 sing Y N 522 TRP NE1 HE1 sing N N 523 TRP CE2 CZ2 sing Y N 524 TRP CE3 CZ3 doub Y N 525 TRP CE3 HE3 sing N N 526 TRP CZ2 CH2 doub Y N 527 TRP CZ2 HZ2 sing N N 528 TRP CZ3 CH2 sing Y N 529 TRP CZ3 HZ3 sing N N 530 TRP CH2 HH2 sing N N 531 TRP OXT HXT sing N N 532 TYR N CA sing N N 533 TYR N H sing N N 534 TYR N H2 sing N N 535 TYR CA C sing N N 536 TYR CA CB sing N N 537 TYR CA HA sing N N 538 TYR C O doub N N 539 TYR C OXT sing N N 540 TYR CB CG sing N N 541 TYR CB HB2 sing N N 542 TYR CB HB3 sing N N 543 TYR CG CD1 doub Y N 544 TYR CG CD2 sing Y N 545 TYR CD1 CE1 sing Y N 546 TYR CD1 HD1 sing N N 547 TYR CD2 CE2 doub Y N 548 TYR CD2 HD2 sing N N 549 TYR CE1 CZ doub Y N 550 TYR CE1 HE1 sing N N 551 TYR CE2 CZ sing Y N 552 TYR CE2 HE2 sing N N 553 TYR CZ OH sing N N 554 TYR OH HH sing N N 555 TYR OXT HXT sing N N 556 VAL N CA sing N N 557 VAL N H sing N N 558 VAL N H2 sing N N 559 VAL CA C sing N N 560 VAL CA CB sing N N 561 VAL CA HA sing N N 562 VAL C O doub N N 563 VAL C OXT sing N N 564 VAL CB CG1 sing N N 565 VAL CB CG2 sing N N 566 VAL CB HB sing N N 567 VAL CG1 HG11 sing N N 568 VAL CG1 HG12 sing N N 569 VAL CG1 HG13 sing N N 570 VAL CG2 HG21 sing N N 571 VAL CG2 HG22 sing N N 572 VAL CG2 HG23 sing N N 573 VAL OXT HXT sing N N 574 # _ndb_struct_conf_na.entry_id 4UB5 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 C DG 5 1_555 -1.052 -0.341 -0.271 0.021 -2.099 -6.686 1 T_DC1:DG5_D T 1 ? D 5 ? 19 1 1 A DC 2 1_555 C DG 4 1_555 -0.390 -0.211 0.611 -10.594 -12.950 -1.055 2 T_DC2:DG4_D T 2 ? D 4 ? 19 1 1 A DG 3 1_555 C DC 3 1_555 0.080 -0.379 0.134 -1.360 -4.695 -2.656 3 T_DG3:DC3_D T 3 ? D 3 ? 19 1 1 A DA 4 1_555 C DT 2 1_555 0.430 -0.230 0.338 7.520 -14.005 -7.838 4 T_DA4:DT2_D T 4 ? D 2 ? 20 1 1 A DC 5 1_555 C DG 1 1_555 0.202 -0.256 -0.407 9.679 1.792 -0.550 5 T_DC5:DG1_D T 5 ? D 1 ? 19 1 1 A DG 7 1_555 B DC 10 1_555 -0.425 0.046 -0.030 7.847 -10.226 5.752 6 T_DG7:DC10_P T 7 ? P 10 ? 19 1 1 A DC 8 1_555 B DG 9 1_555 0.110 -0.161 -0.577 6.385 -5.487 0.761 7 T_DC8:DG9_P T 8 ? P 9 ? 19 1 1 A DG 9 1_555 B DC 8 1_555 -0.281 -0.120 -0.365 1.517 -0.217 -0.671 8 T_DG9:DC8_P T 9 ? P 8 ? 19 1 1 A DC 10 1_555 B DG 7 1_555 0.167 -0.211 -0.045 5.605 -6.890 -1.012 9 T_DC10:DG7_P T 10 ? P 7 ? 19 1 1 A DA 11 1_555 B DT 6 1_555 0.184 -0.189 0.206 6.939 -7.612 -1.692 10 T_DA11:DT6_P T 11 ? P 6 ? 20 1 1 A DT 12 1_555 B DA 5 1_555 0.004 -0.189 -0.005 -3.802 -17.801 5.118 11 T_DT12:DA5_P T 12 ? P 5 ? 20 1 1 A DC 13 1_555 B DG 4 1_555 -0.035 0.037 0.004 9.446 -14.307 5.191 12 T_DC13:DG4_P T 13 ? P 4 ? 19 1 1 A DA 14 1_555 B DT 3 1_555 -0.153 -0.009 0.387 2.654 -15.636 0.491 13 T_DA14:DT3_P T 14 ? P 3 ? 20 1 1 A DG 15 1_555 B DC 2 1_555 -0.474 -0.358 0.425 5.216 -10.090 -4.717 14 T_DG15:DC2_P T 15 ? P 2 ? 19 1 1 A DC 16 1_555 B DG 1 1_555 0.333 -0.150 -0.005 6.491 -13.681 0.556 15 T_DC16:DG1_P T 16 ? P 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 C DG 5 1_555 A DC 2 1_555 C DG 4 1_555 0.129 0.535 3.643 -4.381 1.741 43.776 0.531 -0.633 3.632 2.326 5.855 44.017 1 TT_DC1DC2:DG4DG5_DD T 1 ? D 5 ? T 2 ? D 4 ? 1 A DC 2 1_555 C DG 4 1_555 A DG 3 1_555 C DC 3 1_555 0.316 1.147 3.246 3.879 0.570 33.416 1.890 0.088 3.280 0.987 -6.717 33.639 2 TT_DC2DG3:DC3DG4_DD T 2 ? D 4 ? T 3 ? D 3 ? 1 A DG 3 1_555 C DC 3 1_555 A DA 4 1_555 C DT 2 1_555 -0.898 1.379 3.149 -4.220 -2.173 43.644 2.044 0.815 3.149 -2.913 5.656 43.889 3 TT_DG3DA4:DT2DC3_DD T 3 ? D 3 ? T 4 ? D 2 ? 1 A DA 4 1_555 C DT 2 1_555 A DC 5 1_555 C DG 1 1_555 0.867 -0.512 3.272 5.863 4.099 28.416 -1.913 -0.426 3.277 8.186 -11.710 29.284 4 TT_DA4DC5:DG1DT2_DD T 4 ? D 2 ? T 5 ? D 1 ? 1 A DG 7 1_555 B DC 10 1_555 A DC 8 1_555 B DG 9 1_555 0.688 -0.458 3.499 4.024 7.450 35.735 -1.817 -0.505 3.393 11.934 -6.447 36.693 5 TT_DG7DC8:DG9DC10_PP T 7 ? P 10 ? T 8 ? P 9 ? 1 A DC 8 1_555 B DG 9 1_555 A DG 9 1_555 B DC 8 1_555 -1.229 -0.242 3.722 -2.743 6.605 32.768 -1.665 1.613 3.692 11.536 4.791 33.519 6 TT_DC8DG9:DC8DG9_PP T 8 ? P 9 ? T 9 ? P 8 ? 1 A DG 9 1_555 B DC 8 1_555 A DC 10 1_555 B DG 7 1_555 -0.275 -0.434 3.253 -3.316 5.976 31.675 -1.819 -0.084 3.133 10.792 5.989 32.385 7 TT_DG9DC10:DG7DC8_PP T 9 ? P 8 ? T 10 ? P 7 ? 1 A DC 10 1_555 B DG 7 1_555 A DA 11 1_555 B DT 6 1_555 -0.491 -0.493 3.336 -2.753 1.218 35.963 -0.973 0.393 3.346 1.968 4.449 36.084 8 TT_DC10DA11:DT6DG7_PP T 10 ? P 7 ? T 11 ? P 6 ? 1 A DA 11 1_555 B DT 6 1_555 A DT 12 1_555 B DA 5 1_555 -0.286 -0.528 3.578 1.795 0.328 30.548 -1.071 0.929 3.550 0.622 -3.402 30.601 9 TT_DA11DT12:DA5DT6_PP T 11 ? P 6 ? T 12 ? P 5 ? 1 A DT 12 1_555 B DA 5 1_555 A DC 13 1_555 B DG 4 1_555 0.228 0.650 2.974 1.977 3.254 33.349 0.635 -0.096 3.030 5.648 -3.431 33.559 10 TT_DT12DC13:DG4DA5_PP T 12 ? P 5 ? T 13 ? P 4 ? 1 A DC 13 1_555 B DG 4 1_555 A DA 14 1_555 B DT 3 1_555 -0.228 2.355 3.530 -1.274 -8.749 49.643 3.405 0.174 3.104 -10.326 1.504 50.375 11 TT_DC13DA14:DT3DG4_PP T 13 ? P 4 ? T 14 ? P 3 ? 1 A DA 14 1_555 B DT 3 1_555 A DG 15 1_555 B DC 2 1_555 0.248 0.037 3.181 -3.084 8.351 27.278 -1.758 -1.176 3.015 17.138 6.329 28.668 12 TT_DA14DG15:DC2DT3_PP T 14 ? P 3 ? T 15 ? P 2 ? 1 A DG 15 1_555 B DC 2 1_555 A DC 16 1_555 B DG 1 1_555 1.066 -0.424 3.303 5.185 -1.884 35.842 -0.408 -0.959 3.436 -3.038 -8.364 36.250 13 TT_DG15DC16:DG1DC2_PP T 15 ? P 2 ? T 16 ? P 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)' 'United States' ES050158 1 'National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)' 'United States' ES050161 2 'National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)' 'United States' ES043010 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'MANGANESE (II) ION' MN 6 "8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" 8DG 7 'SODIUM ION' NA 8 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2FMS _pdbx_initial_refinement_model.details 'PDB entry 2FMS' #