HEADER OXIDOREDUCTASE 13-AUG-14 4UBH TITLE RESTING STATE OF RAT CYSTEINE DIOXYGENASE Y157F VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DIOXYGENASE TYPE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSTEINE DIOXYGENASE TYPE I,CDO-I; COMPND 5 EC: 1.13.11.20; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: CDO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPR-IBA1/RATCDO/Y157FVARIANT KEYWDS CYSTEINE DIOXYGENASE, NON-HEME MONO-IRON, CUPIN, TYROSINE TO KEYWDS 2 PHENYLALANINE SUBSTITUTION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.P.TCHESNOKOV,M.FELLNER,G.N.L.JAMESON,S.M.WILBANKS REVDAT 3 27-SEP-23 4UBH 1 REMARK LINK REVDAT 2 22-NOV-17 4UBH 1 SOURCE REMARK REVDAT 1 11-FEB-15 4UBH 0 JRNL AUTH E.P.TCHESNOKOV,M.FELLNER,G.N.L.JAMESON,S.M.WILBANKS JRNL TITL CRYSTAL STRUCTURE OF CYSTEINE DIOXYGENASE MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.8471 - 4.2501 1.00 2653 118 0.1490 0.1909 REMARK 3 2 4.2501 - 3.3758 1.00 2638 124 0.1435 0.1817 REMARK 3 3 3.3758 - 2.9498 1.00 2638 131 0.1588 0.1885 REMARK 3 4 2.9498 - 2.6804 1.00 2626 144 0.1709 0.2140 REMARK 3 5 2.6804 - 2.4884 1.00 2574 177 0.1915 0.2413 REMARK 3 6 2.4884 - 2.3418 1.00 2618 154 0.1880 0.2275 REMARK 3 7 2.3418 - 2.2246 1.00 2625 127 0.2293 0.2924 REMARK 3 8 2.2246 - 2.1278 1.00 2634 150 0.2027 0.2326 REMARK 3 9 2.1278 - 2.0459 1.00 2625 131 0.2091 0.2406 REMARK 3 10 2.0459 - 1.9754 1.00 2652 145 0.2243 0.2526 REMARK 3 11 1.9754 - 1.9136 1.00 2605 161 0.2833 0.3286 REMARK 3 12 1.9136 - 1.8589 1.00 2616 124 0.3008 0.3387 REMARK 3 13 1.8589 - 1.8100 1.00 2641 121 0.3056 0.3637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1568 REMARK 3 ANGLE : 0.980 2118 REMARK 3 CHIRALITY : 0.041 227 REMARK 3 PLANARITY : 0.004 276 REMARK 3 DIHEDRAL : 13.156 576 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953700 REMARK 200 MONOCHROMATOR : SILICON DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35952 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 25.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 55.60 REMARK 200 R MERGE (I) : 0.46400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 56.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35920 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4KWJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROPS OF 2.5 MICROL OF REMARK 280 APPROXIMATELY 24 MG/ML Y157F-CDO (20MM TRIS-CL PH 8.0) AND 2.5 REMARK 280 MICROL RESERVOIR BUFFER CONTAINING SEEDS FROM WT-CDO WERE REMARK 280 ALLOWED TO EQUILIBRATE ABOVE THE RESERVOIR BUFFER (26% (W/V) REMARK 280 POLYETHYLENE GLYCOL 4000, 200 MM AMMONIUM ACETATE, 100 MM SODIUM REMARK 280 CITRATE)., PH 6.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.99500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.89500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 91.49250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.89500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.49750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.89500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.89500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 91.49250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.89500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.89500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.49750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.99500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 PHE A 191 REMARK 465 THR A 192 REMARK 465 THR A 193 REMARK 465 SER A 194 REMARK 465 GLY A 195 REMARK 465 SER A 196 REMARK 465 LEU A 197 REMARK 465 GLU A 198 REMARK 465 ASN A 199 REMARK 465 ASN A 200 REMARK 465 SER A 201 REMARK 465 ALA A 202 REMARK 465 TRP A 203 REMARK 465 SER A 204 REMARK 465 HIS A 205 REMARK 465 PRO A 206 REMARK 465 GLN A 207 REMARK 465 PHE A 208 REMARK 465 GLU A 209 REMARK 465 LYS A 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 646 O HOH A 660 1.95 REMARK 500 O HOH A 406 O HOH A 716 1.96 REMARK 500 O HOH A 422 O HOH A 449 2.01 REMARK 500 O HOH A 665 O HOH A 739 2.05 REMARK 500 NE2 GLN A 55 O HOH A 401 2.07 REMARK 500 O HOH A 556 O HOH A 687 2.08 REMARK 500 ND2 ASN A 67 O HOH A 402 2.08 REMARK 500 O HOH A 736 O HOH A 748 2.09 REMARK 500 O HOH A 471 O HOH A 484 2.11 REMARK 500 OD2 ASP A 111 O HOH A 403 2.13 REMARK 500 O HOH A 669 O HOH A 741 2.13 REMARK 500 NZ LYS A 112 O HOH A 404 2.15 REMARK 500 O HOH A 604 O HOH A 701 2.17 REMARK 500 O HOH A 603 O HOH A 641 2.17 REMARK 500 O HOH A 474 O HOH A 493 2.17 REMARK 500 ND2 ASN A 71 O HOH A 602 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 491 O HOH A 516 8555 2.06 REMARK 500 O HOH A 420 O HOH A 425 3454 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 128 -8.15 72.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 635 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A 652 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 672 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 677 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 689 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 693 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 696 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A 705 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 713 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A 721 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 724 DISTANCE = 8.16 ANGSTROMS REMARK 525 HOH A 730 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A 735 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 747 DISTANCE = 8.22 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 9 O REMARK 620 2 HOH A 583 O 127.5 REMARK 620 3 HOH A 738 O 123.0 81.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 O REMARK 620 2 ARG A 57 O 72.4 REMARK 620 3 CYS A 76 O 164.4 103.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 56 OH REMARK 620 2 THR A 180 O 43.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 62 O REMARK 620 2 SER A 183 OG 132.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 310 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 82 O REMARK 620 2 HOH A 545 O 116.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 HIS A 88 NE2 101.6 REMARK 620 3 HIS A 140 NE2 99.4 101.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 101 O REMARK 620 2 ASN A 144 OD1 70.0 REMARK 620 3 GLU A 149 O 143.7 79.1 REMARK 620 4 HOH A 446 O 103.2 128.8 111.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 103 O REMARK 620 2 THR A 105 OG1 122.4 REMARK 620 3 ARG A 141 O 73.9 102.3 REMARK 620 4 GLU A 143 OE1 121.4 98.2 140.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 135 OD1 REMARK 620 2 GLY A 138 O 117.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 553 O REMARK 620 2 HOH A 646 O 112.8 REMARK 620 3 HOH A 660 O 104.1 37.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 312 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 524 O REMARK 620 2 HOH A 669 O 87.8 REMARK 620 3 HOH A 686 O 114.8 113.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 312 DBREF 4UBH A 1 200 UNP P21816 CDO1_RAT 1 200 SEQADV 4UBH PHE A 157 UNP P21816 TYR 157 ENGINEERED MUTATION SEQADV 4UBH SER A 201 UNP P21816 EXPRESSION TAG SEQADV 4UBH ALA A 202 UNP P21816 EXPRESSION TAG SEQADV 4UBH TRP A 203 UNP P21816 EXPRESSION TAG SEQADV 4UBH SER A 204 UNP P21816 EXPRESSION TAG SEQADV 4UBH HIS A 205 UNP P21816 EXPRESSION TAG SEQADV 4UBH PRO A 206 UNP P21816 EXPRESSION TAG SEQADV 4UBH GLN A 207 UNP P21816 EXPRESSION TAG SEQADV 4UBH PHE A 208 UNP P21816 EXPRESSION TAG SEQADV 4UBH GLU A 209 UNP P21816 EXPRESSION TAG SEQADV 4UBH LYS A 210 UNP P21816 EXPRESSION TAG SEQRES 1 A 210 MET GLU ARG THR GLU LEU LEU LYS PRO ARG THR LEU ALA SEQRES 2 A 210 ASP LEU ILE ARG ILE LEU HIS GLU LEU PHE ALA GLY ASP SEQRES 3 A 210 GLU VAL ASN VAL GLU GLU VAL GLN ALA VAL LEU GLU ALA SEQRES 4 A 210 TYR GLU SER ASN PRO ALA GLU TRP ALA LEU TYR ALA LYS SEQRES 5 A 210 PHE ASP GLN TYR ARG TYR THR ARG ASN LEU VAL ASP GLN SEQRES 6 A 210 GLY ASN GLY LYS PHE ASN LEU MET ILE LEU CYS TRP GLY SEQRES 7 A 210 GLU GLY HIS GLY SER SER ILE HIS ASP HIS THR ASP SER SEQRES 8 A 210 HIS CYS PHE LEU LYS LEU LEU GLN GLY ASN LEU LYS GLU SEQRES 9 A 210 THR LEU PHE ASP TRP PRO ASP LYS LYS SER ASN GLU MET SEQRES 10 A 210 ILE LYS LYS SER GLU ARG THR LEU ARG GLU ASN GLN CYS SEQRES 11 A 210 ALA TYR ILE ASN ASP SER ILE GLY LEU HIS ARG VAL GLU SEQRES 12 A 210 ASN VAL SER HIS THR GLU PRO ALA VAL SER LEU HIS LEU SEQRES 13 A 210 PHE SER PRO PRO PHE ASP THR CYS HIS ALA PHE ASP GLN SEQRES 14 A 210 ARG THR GLY HIS LYS ASN LYS VAL THR MET THR PHE HIS SEQRES 15 A 210 SER LYS PHE GLY ILE ARG THR PRO PHE THR THR SER GLY SEQRES 16 A 210 SER LEU GLU ASN ASN SER ALA TRP SER HIS PRO GLN PHE SEQRES 17 A 210 GLU LYS HET FE2 A 301 1 HET NA A 302 1 HET NA A 303 1 HET NA A 304 1 HET NA A 305 1 HET NA A 306 1 HET NA A 307 1 HET NA A 308 1 HET NA A 309 1 HET NA A 310 1 HET CL A 311 1 HET NA A 312 1 HETNAM FE2 FE (II) ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 2 FE2 FE 2+ FORMUL 3 NA 10(NA 1+) FORMUL 12 CL CL 1- FORMUL 14 HOH *349(H2 O) HELIX 1 AA1 THR A 11 PHE A 23 1 13 HELIX 2 AA2 ASN A 29 TYR A 40 1 12 HELIX 3 AA3 ASN A 43 ALA A 48 1 6 HELIX 4 AA4 LEU A 49 ALA A 51 5 3 HELIX 5 AA5 GLN A 65 LYS A 69 5 5 SHEET 1 AA1 7 CYS A 130 ILE A 133 0 SHEET 2 AA1 7 HIS A 92 GLN A 99 -1 N LEU A 95 O ALA A 131 SHEET 3 AA1 7 ALA A 151 SER A 158 -1 O SER A 158 N HIS A 92 SHEET 4 AA1 7 ASN A 71 TRP A 77 -1 N MET A 73 O HIS A 155 SHEET 5 AA1 7 THR A 59 ASP A 64 -1 N ASN A 61 O ILE A 74 SHEET 6 AA1 7 SER A 183 LYS A 184 1 O SER A 183 N LEU A 62 SHEET 7 AA1 7 ILE A 187 ARG A 188 -1 O ILE A 187 N LYS A 184 SHEET 1 AA2 3 ILE A 85 HIS A 86 0 SHEET 2 AA2 3 THR A 163 PHE A 167 -1 O PHE A 167 N ILE A 85 SHEET 3 AA2 3 LYS A 174 THR A 178 -1 O VAL A 177 N CYS A 164 SHEET 1 AA3 3 SER A 121 LEU A 125 0 SHEET 2 AA3 3 LEU A 102 PHE A 107 -1 N LEU A 102 O LEU A 125 SHEET 3 AA3 3 LEU A 139 GLU A 143 -1 O GLU A 143 N LYS A 103 LINK O PRO A 9 NA NA A 309 1555 1555 2.61 LINK O ASP A 54 NA NA A 303 1555 1555 3.09 LINK OH TYR A 56 NA NA A 307 1555 8555 3.12 LINK O ARG A 57 NA NA A 303 1555 1555 2.80 LINK O LEU A 62 NA NA A 308 1555 1555 2.87 LINK O CYS A 76 NA NA A 303 1555 1555 2.73 LINK O GLY A 82 NA NA A 310 1555 1555 2.84 LINK NE2 HIS A 86 FE FE2 A 301 1555 1555 1.92 LINK NE2 HIS A 88 FE FE2 A 301 1555 1555 2.03 LINK O ASN A 101 NA NA A 305 1555 1555 3.17 LINK O LYS A 103 NA NA A 306 1555 1555 2.86 LINK OG1 THR A 105 NA NA A 306 1555 1555 2.80 LINK OD1 ASP A 135 NA NA A 302 1555 1555 2.57 LINK O GLY A 138 NA NA A 302 1555 1555 2.59 LINK NE2 HIS A 140 FE FE2 A 301 1555 1555 2.14 LINK O ARG A 141 NA NA A 306 1555 1555 3.06 LINK OE1 GLU A 143 NA NA A 306 1555 1555 2.71 LINK OD1 ASN A 144 NA NA A 305 1555 1555 2.76 LINK O GLU A 149 NA NA A 305 1555 1555 2.93 LINK O THR A 180 NA NA A 307 1555 1555 3.00 LINK OG SER A 183 NA NA A 308 1555 1555 2.77 LINK NA NA A 304 O HOH A 553 1555 1555 2.77 LINK NA NA A 304 O HOH A 646 1555 1555 2.99 LINK NA NA A 304 O HOH A 660 1555 1555 3.05 LINK NA NA A 305 O HOH A 446 1555 1555 2.77 LINK NA NA A 309 O HOH A 583 1555 1555 2.89 LINK NA NA A 309 O HOH A 738 1555 1555 2.43 LINK NA NA A 310 O HOH A 545 1555 1555 2.87 LINK NA NA A 312 O HOH A 524 1555 1555 2.75 LINK NA NA A 312 O HOH A 669 1555 1555 3.20 LINK NA NA A 312 O HOH A 686 1555 1555 2.52 CISPEP 1 SER A 158 PRO A 159 0 -3.88 SITE 1 AC1 4 HIS A 86 HIS A 88 HIS A 140 CL A 311 SITE 1 AC2 4 HIS A 88 ASN A 134 ASP A 135 GLY A 138 SITE 1 AC3 5 PHE A 53 ASP A 54 ARG A 57 TYR A 58 SITE 2 AC3 5 CYS A 76 SITE 1 AC4 7 THR A 11 LEU A 12 ALA A 13 GLU A 46 SITE 2 AC4 7 HOH A 553 HOH A 646 HOH A 660 SITE 1 AC5 5 ASN A 101 ASN A 144 SER A 146 GLU A 149 SITE 2 AC5 5 HOH A 446 SITE 1 AC6 4 LYS A 103 THR A 105 ARG A 141 GLU A 143 SITE 1 AC7 5 TYR A 56 THR A 59 ARG A 60 THR A 180 SITE 2 AC7 5 HIS A 182 SITE 1 AC8 5 TYR A 50 LEU A 62 SER A 183 PHE A 185 SITE 2 AC8 5 GLY A 186 SITE 1 AC9 7 LYS A 8 PRO A 9 ARG A 10 TYR A 40 SITE 2 AC9 7 GLU A 41 HOH A 583 HOH A 738 SITE 1 AD1 5 ARG A 57 TYR A 58 HIS A 81 GLY A 82 SITE 2 AD1 5 HOH A 545 SITE 1 AD2 5 HIS A 86 HIS A 88 HIS A 140 HIS A 155 SITE 2 AD2 5 FE2 A 301 SITE 1 AD3 3 HIS A 165 HOH A 524 HOH A 686 CRYST1 57.790 57.790 121.990 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017304 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008197 0.00000