HEADER TRANSFERASE 07-DEC-14 4UD5 TITLE STRUCTURAL PLASTICITY OF CID1 PROVIDES A BASIS FOR ITS RNA TERMINAL TITLE 2 URIDYLYL TRANSFERASE ACTIVITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(A) RNA POLYMERASE PROTEIN CID1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CAFFEINE-INDUCED DEATH PROTEIN 1, CAFFEINE-INDUCED DEATH COMPND 5 SUPPRESSOR 1 URIDYLYLTRANSFERASE; COMPND 6 EC: 2.7.7.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-TCID1 KEYWDS TRANSFERASE, CAFFEINE, URIDYLYLTRANSFERASE ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR L.A.YATES,B.P.DURRANT,S.FLEURDEPINE,K.HARLOS,C.J.NORBURY, AUTHOR 2 R.J.C.GILBERT REVDAT 3 20-DEC-23 4UD5 1 REMARK REVDAT 2 01-APR-15 4UD5 1 JRNL REVDAT 1 18-MAR-15 4UD5 0 JRNL AUTH L.A.YATES,B.P.DURRANT,S.FLEURDEPINE,K.HARLOS,C.J.NORBURY, JRNL AUTH 2 R.J.C.GILBERT JRNL TITL STRUCTURAL PLASTICITY OF CID1 PROVIDES A BASIS FOR ITS JRNL TITL 2 DISTRIBUTIVE RNA TERMINAL URIDYLYL TRANSFERASE ACTIVITY. JRNL REF NUCLEIC ACIDS RES. V. 43 2968 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 25712096 JRNL DOI 10.1093/NAR/GKV122 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1772) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 30460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.8488 - 5.6030 0.97 2639 147 0.1454 0.1776 REMARK 3 2 5.6030 - 4.4478 0.97 2617 137 0.1372 0.1807 REMARK 3 3 4.4478 - 3.8857 0.97 2584 150 0.1511 0.1900 REMARK 3 4 3.8857 - 3.5304 0.97 2594 135 0.1757 0.2105 REMARK 3 5 3.5304 - 3.2774 0.99 2626 152 0.2021 0.2473 REMARK 3 6 3.2774 - 3.0842 0.99 2659 138 0.2139 0.2722 REMARK 3 7 3.0842 - 2.9298 0.99 2641 127 0.2260 0.2888 REMARK 3 8 2.9298 - 2.8022 0.99 2651 130 0.2343 0.3034 REMARK 3 9 2.8022 - 2.6943 1.00 2703 135 0.2462 0.3023 REMARK 3 10 2.6943 - 2.6014 0.99 2634 129 0.2644 0.3195 REMARK 3 11 2.6014 - 2.5200 0.99 2574 158 0.2707 0.3248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5585 REMARK 3 ANGLE : 0.881 7553 REMARK 3 CHIRALITY : 0.034 827 REMARK 3 PLANARITY : 0.006 966 REMARK 3 DIHEDRAL : 15.845 2079 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.0681 -2.9357 28.4825 REMARK 3 T TENSOR REMARK 3 T11: 0.6103 T22: 0.4450 REMARK 3 T33: 0.6001 T12: 0.0348 REMARK 3 T13: -0.0069 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 3.6649 L22: 4.4308 REMARK 3 L33: 2.9807 L12: 4.1318 REMARK 3 L13: -3.0305 L23: -3.8531 REMARK 3 S TENSOR REMARK 3 S11: -0.2841 S12: -0.0686 S13: -0.7540 REMARK 3 S21: -0.0713 S22: -0.0386 S23: -0.8499 REMARK 3 S31: 0.3644 S32: 0.0756 S33: 0.4102 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.6521 -17.6227 35.5700 REMARK 3 T TENSOR REMARK 3 T11: 0.7111 T22: 0.4943 REMARK 3 T33: 0.6860 T12: -0.0525 REMARK 3 T13: 0.1120 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 1.8270 L22: 3.6044 REMARK 3 L33: 8.6515 L12: 2.3750 REMARK 3 L13: 3.7288 L23: 5.2526 REMARK 3 S TENSOR REMARK 3 S11: 0.1169 S12: 0.1659 S13: -0.1226 REMARK 3 S21: -0.1085 S22: -0.1013 S23: 0.3508 REMARK 3 S31: 0.8266 S32: -0.5357 S33: -0.1313 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.3276 -11.3105 40.0089 REMARK 3 T TENSOR REMARK 3 T11: 0.7981 T22: 0.4550 REMARK 3 T33: 0.6650 T12: -0.0839 REMARK 3 T13: 0.1444 T23: -0.0568 REMARK 3 L TENSOR REMARK 3 L11: 9.1018 L22: 2.7588 REMARK 3 L33: 7.1026 L12: -3.8736 REMARK 3 L13: 3.0087 L23: -3.3105 REMARK 3 S TENSOR REMARK 3 S11: -0.0353 S12: -0.3995 S13: 0.7485 REMARK 3 S21: -0.0218 S22: -0.1033 S23: -0.3154 REMARK 3 S31: -0.1368 S32: 0.5695 S33: 0.1198 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 166 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.2669 11.5434 22.8039 REMARK 3 T TENSOR REMARK 3 T11: 0.4962 T22: 0.4329 REMARK 3 T33: 0.4527 T12: 0.0620 REMARK 3 T13: 0.0871 T23: 0.0984 REMARK 3 L TENSOR REMARK 3 L11: 2.7390 L22: 3.7413 REMARK 3 L33: 3.0711 L12: 0.4735 REMARK 3 L13: 0.5442 L23: -0.4809 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: -0.1524 S13: 0.0621 REMARK 3 S21: 0.4595 S22: 0.2114 S23: 0.4863 REMARK 3 S31: -0.1217 S32: -0.5009 S33: -0.1941 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.3853 20.0576 -0.4021 REMARK 3 T TENSOR REMARK 3 T11: 0.7921 T22: 0.6417 REMARK 3 T33: 0.6386 T12: 0.1286 REMARK 3 T13: 0.0782 T23: 0.0587 REMARK 3 L TENSOR REMARK 3 L11: 7.9443 L22: 3.7902 REMARK 3 L33: 8.4856 L12: 4.6216 REMARK 3 L13: 4.2939 L23: 5.0187 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: 0.0482 S13: 0.8188 REMARK 3 S21: -0.4507 S22: -0.0965 S23: 0.4338 REMARK 3 S31: -1.0078 S32: -0.5023 S33: 0.2403 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.5480 -5.6281 -8.3625 REMARK 3 T TENSOR REMARK 3 T11: 0.6720 T22: 0.5876 REMARK 3 T33: 0.4333 T12: -0.0932 REMARK 3 T13: 0.1309 T23: 0.0726 REMARK 3 L TENSOR REMARK 3 L11: 4.1865 L22: 8.9580 REMARK 3 L33: 6.0561 L12: 1.1309 REMARK 3 L13: 1.6931 L23: 7.0036 REMARK 3 S TENSOR REMARK 3 S11: -0.0795 S12: 0.0001 S13: -0.2707 REMARK 3 S21: 0.3014 S22: -0.2512 S23: 0.2092 REMARK 3 S31: 0.3972 S32: -0.6082 S33: 0.3674 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.4303 -12.0941 -16.7542 REMARK 3 T TENSOR REMARK 3 T11: 0.7079 T22: 0.4931 REMARK 3 T33: 0.5436 T12: -0.0467 REMARK 3 T13: 0.1358 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 4.8600 L22: 4.9237 REMARK 3 L33: 9.5477 L12: 2.1348 REMARK 3 L13: 3.3691 L23: 2.1216 REMARK 3 S TENSOR REMARK 3 S11: 0.1544 S12: -0.2079 S13: -0.0989 REMARK 3 S21: 0.0359 S22: -0.0881 S23: -0.2199 REMARK 3 S31: 0.4643 S32: 0.0084 S33: -0.1171 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 166 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.7001 7.3438 -2.3508 REMARK 3 T TENSOR REMARK 3 T11: 0.3553 T22: 0.5119 REMARK 3 T33: 0.3685 T12: 0.0093 REMARK 3 T13: 0.0129 T23: -0.0844 REMARK 3 L TENSOR REMARK 3 L11: 4.2107 L22: 5.6291 REMARK 3 L33: 3.7462 L12: 0.0788 REMARK 3 L13: -0.4713 L23: -1.4965 REMARK 3 S TENSOR REMARK 3 S11: 0.2142 S12: 0.4298 S13: -0.0147 REMARK 3 S21: -0.5519 S22: -0.0051 S23: -0.1904 REMARK 3 S31: 0.0230 S32: 0.4552 S33: -0.1665 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 225 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.7097 4.6802 9.9542 REMARK 3 T TENSOR REMARK 3 T11: 0.4669 T22: 0.5457 REMARK 3 T33: 0.3148 T12: -0.0338 REMARK 3 T13: -0.0812 T23: -0.0508 REMARK 3 L TENSOR REMARK 3 L11: 3.7093 L22: 7.2272 REMARK 3 L33: 5.4854 L12: -1.0356 REMARK 3 L13: -0.4457 L23: -0.8340 REMARK 3 S TENSOR REMARK 3 S11: 0.1165 S12: -0.1757 S13: -0.2002 REMARK 3 S21: 0.2971 S22: 0.1489 S23: -0.0760 REMARK 3 S31: 0.4717 S32: 0.4041 S33: -0.2729 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 281 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 99.7351 5.8347 0.5167 REMARK 3 T TENSOR REMARK 3 T11: 0.5788 T22: 1.0630 REMARK 3 T33: 0.7934 T12: 0.0092 REMARK 3 T13: 0.0259 T23: -0.0663 REMARK 3 L TENSOR REMARK 3 L11: 3.4737 L22: 5.8601 REMARK 3 L33: 5.1364 L12: -1.8001 REMARK 3 L13: -1.7179 L23: 1.8965 REMARK 3 S TENSOR REMARK 3 S11: 0.1403 S12: 0.0065 S13: -0.0125 REMARK 3 S21: -0.6064 S22: 0.0142 S23: -0.9957 REMARK 3 S31: -0.0124 S32: 1.5652 S33: -0.1519 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 313 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.5677 -0.7364 -9.5876 REMARK 3 T TENSOR REMARK 3 T11: 0.9589 T22: 1.2052 REMARK 3 T33: 0.7938 T12: 0.1629 REMARK 3 T13: 0.0259 T23: -0.2309 REMARK 3 L TENSOR REMARK 3 L11: 5.1033 L22: 4.7987 REMARK 3 L33: 2.5444 L12: -2.8379 REMARK 3 L13: -3.4751 L23: 2.7720 REMARK 3 S TENSOR REMARK 3 S11: -0.2503 S12: 0.8472 S13: -1.0373 REMARK 3 S21: -1.1924 S22: 0.2739 S23: -0.2352 REMARK 3 S31: 1.1029 S32: 0.5335 S33: -0.0497 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 344 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.4531 24.2246 -8.5392 REMARK 3 T TENSOR REMARK 3 T11: 0.8409 T22: 0.8996 REMARK 3 T33: 0.8184 T12: -0.1065 REMARK 3 T13: 0.1984 T23: 0.1407 REMARK 3 L TENSOR REMARK 3 L11: 2.5719 L22: 8.2667 REMARK 3 L33: 4.6205 L12: -3.5417 REMARK 3 L13: -0.2499 L23: -0.7701 REMARK 3 S TENSOR REMARK 3 S11: 0.4260 S12: 0.9501 S13: 0.8090 REMARK 3 S21: -0.6803 S22: -0.3085 S23: -0.4591 REMARK 3 S31: -1.0595 S32: 0.5117 S33: -0.2389 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1290062520. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30480 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 58.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4E7X REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM HEPES, 200MM NACL, 0.5MM TCEP, PH REMARK 280 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.88500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 40 REMARK 465 ARG A 111 REMARK 465 VAL A 112 REMARK 465 GLN A 113 REMARK 465 ARG A 382 REMARK 465 ARG A 383 REMARK 465 GLN A 384 REMARK 465 LYS A 385 REMARK 465 LYS A 386 REMARK 465 THR A 387 REMARK 465 ASP A 388 REMARK 465 GLU A 389 REMARK 465 GLN A 390 REMARK 465 SER A 391 REMARK 465 ASN A 392 REMARK 465 LYS A 393 REMARK 465 LYS A 394 REMARK 465 LEU A 395 REMARK 465 LEU A 396 REMARK 465 ASN A 397 REMARK 465 GLU A 398 REMARK 465 THR A 399 REMARK 465 ASP A 400 REMARK 465 GLY A 401 REMARK 465 ASP A 402 REMARK 465 ASN A 403 REMARK 465 SER A 404 REMARK 465 GLU A 405 REMARK 465 SER B 40 REMARK 465 ARG B 383 REMARK 465 GLN B 384 REMARK 465 LYS B 385 REMARK 465 LYS B 386 REMARK 465 THR B 387 REMARK 465 ASP B 388 REMARK 465 GLU B 389 REMARK 465 GLN B 390 REMARK 465 SER B 391 REMARK 465 ASN B 392 REMARK 465 LYS B 393 REMARK 465 LYS B 394 REMARK 465 LEU B 395 REMARK 465 LEU B 396 REMARK 465 ASN B 397 REMARK 465 GLU B 398 REMARK 465 THR B 399 REMARK 465 ASP B 400 REMARK 465 GLY B 401 REMARK 465 ASP B 402 REMARK 465 ASN B 403 REMARK 465 SER B 404 REMARK 465 GLU B 405 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 329 O HOH B 2014 2.02 REMARK 500 OG SER B 266 O HOH B 2012 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 362 NH1 ARG B 78 2755 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 150 -61.09 -105.46 REMARK 500 THR A 208 -149.05 -106.45 REMARK 500 TYR A 281 -53.80 -120.16 REMARK 500 ALA B 138 -129.54 59.12 REMARK 500 LYS B 150 -61.58 -105.14 REMARK 500 THR B 208 -150.30 -106.07 REMARK 500 TYR B 281 -52.98 -120.19 REMARK 500 ALA B 316 4.57 89.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UD4 RELATED DB: PDB REMARK 900 STRUCTURAL PLASTICITY OF CID1 PROVIDES A BASIS FOR ITS RNA TERMINAL REMARK 900 URIDYLYL TRANSFERASE ACTIVITY REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS PROTEIN HAS THE SURFACE ENTROPY REDUCTION MUTATIONS REMARK 999 K133A R137A R277A K282A REMARK 999 THIS PROTEIN HAS THE SURFACE ENTROPY REDUCTION MUTATIONS REMARK 999 K133A R137A R277A K282A DBREF 4UD5 A 40 405 UNP O13833 CID1_SCHPO 40 405 DBREF 4UD5 B 40 405 UNP O13833 CID1_SCHPO 40 405 SEQADV 4UD5 ALA A 133 UNP O13833 LYS 133 ENGINEERED MUTATION SEQADV 4UD5 ALA A 137 UNP O13833 ARG 137 ENGINEERED MUTATION SEQADV 4UD5 ALA A 277 UNP O13833 ARG 277 ENGINEERED MUTATION SEQADV 4UD5 ALA A 282 UNP O13833 LYS 282 ENGINEERED MUTATION SEQADV 4UD5 ALA B 133 UNP O13833 LYS 133 ENGINEERED MUTATION SEQADV 4UD5 ALA B 137 UNP O13833 ARG 137 ENGINEERED MUTATION SEQADV 4UD5 ALA B 277 UNP O13833 ARG 277 ENGINEERED MUTATION SEQADV 4UD5 ALA B 282 UNP O13833 LYS 282 ENGINEERED MUTATION SEQRES 1 A 366 SER HIS LYS GLU PHE THR LYS PHE CYS TYR GLU VAL TYR SEQRES 2 A 366 ASN GLU ILE LYS ILE SER ASP LYS GLU PHE LYS GLU LYS SEQRES 3 A 366 ARG ALA ALA LEU ASP THR LEU ARG LEU CYS LEU LYS ARG SEQRES 4 A 366 ILE SER PRO ASP ALA GLU LEU VAL ALA PHE GLY SER LEU SEQRES 5 A 366 GLU SER GLY LEU ALA LEU LYS ASN SER ASP MET ASP LEU SEQRES 6 A 366 CYS VAL LEU MET ASP SER ARG VAL GLN SER ASP THR ILE SEQRES 7 A 366 ALA LEU GLN PHE TYR GLU GLU LEU ILE ALA GLU GLY PHE SEQRES 8 A 366 GLU GLY ALA PHE LEU GLN ALA ALA ARG ILE PRO ILE ILE SEQRES 9 A 366 LYS LEU THR SER ASP THR LYS ASN GLY PHE GLY ALA SER SEQRES 10 A 366 PHE GLN CYS ASP ILE GLY PHE ASN ASN ARG LEU ALA ILE SEQRES 11 A 366 HIS ASN THR LEU LEU LEU SER SER TYR THR LYS LEU ASP SEQRES 12 A 366 ALA ARG LEU LYS PRO MET VAL LEU LEU VAL LYS HIS TRP SEQRES 13 A 366 ALA LYS ARG LYS GLN ILE ASN SER PRO TYR PHE GLY THR SEQRES 14 A 366 LEU SER SER TYR GLY TYR VAL LEU MET VAL LEU TYR TYR SEQRES 15 A 366 LEU ILE HIS VAL ILE LYS PRO PRO VAL PHE PRO ASN LEU SEQRES 16 A 366 LEU LEU SER PRO LEU LYS GLN GLU LYS ILE VAL ASP GLY SEQRES 17 A 366 PHE ASP VAL GLY PHE ASP ASP LYS LEU GLU ASP ILE PRO SEQRES 18 A 366 PRO SER GLN ASN TYR SER SER LEU GLY SER LEU LEU HIS SEQRES 19 A 366 GLY PHE PHE ALA PHE TYR ALA TYR ALA PHE GLU PRO ARG SEQRES 20 A 366 GLU LYS VAL VAL THR PHE ARG ARG PRO ASP GLY TYR LEU SEQRES 21 A 366 THR LYS GLN GLU LYS GLY TRP THR SER ALA THR GLU HIS SEQRES 22 A 366 THR GLY SER ALA ASP GLN ILE ILE LYS ASP ARG TYR ILE SEQRES 23 A 366 LEU ALA ILE GLU ASP PRO PHE GLU ILE SER HIS ASN VAL SEQRES 24 A 366 GLY ARG THR VAL SER SER SER GLY LEU TYR ARG ILE ARG SEQRES 25 A 366 GLY GLU PHE MET ALA ALA SER ARG LEU LEU ASN SER ARG SEQRES 26 A 366 SER TYR PRO ILE PRO TYR ASP SER LEU PHE GLU GLU ALA SEQRES 27 A 366 PRO ILE PRO PRO ARG ARG GLN LYS LYS THR ASP GLU GLN SEQRES 28 A 366 SER ASN LYS LYS LEU LEU ASN GLU THR ASP GLY ASP ASN SEQRES 29 A 366 SER GLU SEQRES 1 B 366 SER HIS LYS GLU PHE THR LYS PHE CYS TYR GLU VAL TYR SEQRES 2 B 366 ASN GLU ILE LYS ILE SER ASP LYS GLU PHE LYS GLU LYS SEQRES 3 B 366 ARG ALA ALA LEU ASP THR LEU ARG LEU CYS LEU LYS ARG SEQRES 4 B 366 ILE SER PRO ASP ALA GLU LEU VAL ALA PHE GLY SER LEU SEQRES 5 B 366 GLU SER GLY LEU ALA LEU LYS ASN SER ASP MET ASP LEU SEQRES 6 B 366 CYS VAL LEU MET ASP SER ARG VAL GLN SER ASP THR ILE SEQRES 7 B 366 ALA LEU GLN PHE TYR GLU GLU LEU ILE ALA GLU GLY PHE SEQRES 8 B 366 GLU GLY ALA PHE LEU GLN ALA ALA ARG ILE PRO ILE ILE SEQRES 9 B 366 LYS LEU THR SER ASP THR LYS ASN GLY PHE GLY ALA SER SEQRES 10 B 366 PHE GLN CYS ASP ILE GLY PHE ASN ASN ARG LEU ALA ILE SEQRES 11 B 366 HIS ASN THR LEU LEU LEU SER SER TYR THR LYS LEU ASP SEQRES 12 B 366 ALA ARG LEU LYS PRO MET VAL LEU LEU VAL LYS HIS TRP SEQRES 13 B 366 ALA LYS ARG LYS GLN ILE ASN SER PRO TYR PHE GLY THR SEQRES 14 B 366 LEU SER SER TYR GLY TYR VAL LEU MET VAL LEU TYR TYR SEQRES 15 B 366 LEU ILE HIS VAL ILE LYS PRO PRO VAL PHE PRO ASN LEU SEQRES 16 B 366 LEU LEU SER PRO LEU LYS GLN GLU LYS ILE VAL ASP GLY SEQRES 17 B 366 PHE ASP VAL GLY PHE ASP ASP LYS LEU GLU ASP ILE PRO SEQRES 18 B 366 PRO SER GLN ASN TYR SER SER LEU GLY SER LEU LEU HIS SEQRES 19 B 366 GLY PHE PHE ALA PHE TYR ALA TYR ALA PHE GLU PRO ARG SEQRES 20 B 366 GLU LYS VAL VAL THR PHE ARG ARG PRO ASP GLY TYR LEU SEQRES 21 B 366 THR LYS GLN GLU LYS GLY TRP THR SER ALA THR GLU HIS SEQRES 22 B 366 THR GLY SER ALA ASP GLN ILE ILE LYS ASP ARG TYR ILE SEQRES 23 B 366 LEU ALA ILE GLU ASP PRO PHE GLU ILE SER HIS ASN VAL SEQRES 24 B 366 GLY ARG THR VAL SER SER SER GLY LEU TYR ARG ILE ARG SEQRES 25 B 366 GLY GLU PHE MET ALA ALA SER ARG LEU LEU ASN SER ARG SEQRES 26 B 366 SER TYR PRO ILE PRO TYR ASP SER LEU PHE GLU GLU ALA SEQRES 27 B 366 PRO ILE PRO PRO ARG ARG GLN LYS LYS THR ASP GLU GLN SEQRES 28 B 366 SER ASN LYS LYS LEU LEU ASN GLU THR ASP GLY ASP ASN SEQRES 29 B 366 SER GLU FORMUL 3 HOH *34(H2 O) HELIX 1 1 HIS A 41 LYS A 56 1 16 HELIX 2 2 SER A 58 SER A 80 1 23 HELIX 3 3 GLY A 89 GLY A 94 1 6 HELIX 4 4 THR A 116 GLU A 128 1 13 HELIX 5 5 ASN A 165 ASP A 182 1 18 HELIX 6 6 ARG A 184 LYS A 199 1 16 HELIX 7 7 SER A 203 GLY A 207A 5 5 HELIX 8 8 SER A 210 VAL A 225 1 16 HELIX 9 9 ASN A 233 SER A 237 5 5 HELIX 10 10 LYS A 255 ILE A 259 5 5 HELIX 11 11 SER A 267 TYR A 281 1 15 HELIX 12 12 THR A 300 GLY A 305 1 6 HELIX 13 13 SER A 343 SER A 363 1 21 HELIX 14 14 PRO A 369 GLU A 375 5 7 HELIX 15 15 HIS B 41 LYS B 56 1 16 HELIX 16 16 SER B 58 SER B 80 1 23 HELIX 17 17 GLY B 89 GLY B 94 1 6 HELIX 18 18 SER B 110 GLU B 128 1 19 HELIX 19 19 ASN B 165 ASP B 182 1 18 HELIX 20 20 ARG B 184 LYS B 199 1 16 HELIX 21 21 SER B 203 GLY B 207A 5 5 HELIX 22 22 SER B 210 VAL B 225 1 16 HELIX 23 23 LYS B 255 ILE B 259 5 5 HELIX 24 24 SER B 267 TYR B 281 1 15 HELIX 25 25 THR B 300 GLY B 305 1 6 HELIX 26 26 SER B 343 SER B 363 1 21 HELIX 27 27 PRO B 369 PHE B 374 5 6 SHEET 1 AA 5 GLU A 84 PHE A 88 0 SHEET 2 AA 5 MET A 102 LEU A 107 -1 O ASP A 103 N PHE A 88 SHEET 3 AA 5 CYS A 159 PHE A 163 1 O ASP A 160 N LEU A 104 SHEET 4 AA 5 ILE A 140 ASP A 148 -1 O ILE A 143 N ILE A 161 SHEET 5 AA 5 PHE A 130 ALA A 137 -1 O GLU A 131 N THR A 146 SHEET 1 AB 2 ILE A 244 VAL A 245 0 SHEET 2 AB 2 PHE A 248 ASP A 249 -1 O PHE A 248 N VAL A 245 SHEET 1 AC 2 THR A 310 THR A 313 0 SHEET 2 AC 2 ILE A 319 ASP A 322 -1 O ILE A 320 N HIS A 312 SHEET 1 BA 5 GLU B 84 PHE B 88 0 SHEET 2 BA 5 MET B 102 LEU B 107 -1 O ASP B 103 N PHE B 88 SHEET 3 BA 5 CYS B 159 PHE B 163 1 O ASP B 160 N LEU B 104 SHEET 4 BA 5 ILE B 140 ASP B 148 -1 O ILE B 143 N ILE B 161 SHEET 5 BA 5 PHE B 130 ALA B 137 -1 O GLU B 131 N THR B 146 SHEET 1 BB 2 ILE B 244 VAL B 245 0 SHEET 2 BB 2 PHE B 248 ASP B 249 -1 O PHE B 248 N VAL B 245 SHEET 1 BC 2 THR B 310 THR B 313 0 SHEET 2 BC 2 ILE B 319 ASP B 322 -1 O ILE B 320 N HIS B 312 CISPEP 1 LYS A 227 PRO A 228 0 -1.45 CISPEP 2 TYR A 366 PRO A 367 0 -5.30 CISPEP 3 GLY B 154 ALA B 155 0 -0.73 CISPEP 4 LYS B 227 PRO B 228 0 -1.74 CISPEP 5 TYR B 366 PRO B 367 0 -3.63 CRYST1 62.800 103.770 76.390 90.00 110.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015924 0.000000 0.006042 0.00000 SCALE2 0.000000 0.009637 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014002 0.00000