data_4UDV # _entry.id 4UDV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.296 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4UDV PDBE EBI-62545 WWPDB D_1290062545 # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-2842 _pdbx_database_related.content_type 'associated EM volume' _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4UDV _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2014-12-11 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fromm, S.A.' 1 'Bharat, T.A.M.' 2 'Jakobi, A.J.' 3 'Hagen, W.J.H.' 4 'Sachse, C.' 5 # _citation.id primary _citation.title 'Seeing Tobacco Mosaic Virus Through Direct Electron Detectors.' _citation.journal_abbrev J.Struct.Biol. _citation.journal_volume 189 _citation.page_first 87 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM JSBIEM _citation.country US _citation.journal_id_ISSN 1047-8477 _citation.journal_id_CSD 0803 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25528571 _citation.pdbx_database_id_DOI 10.1016/J.JSB.2014.12.002 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fromm, S.A.' 1 ? primary 'Bharat, T.A.M.' 2 ? primary 'Jakobi, A.J.' 3 ? primary 'Hagen, W.J.H.' 4 ? primary 'Sachse, C.' 5 ? # _cell.entry_id 4UDV _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UDV _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'CAPSID PROTEIN' 17505.426 1 ? ? ? ? 2 polymer nat "5'-D(*GP*AP*AP)-3'" 958.660 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'COAT PROTEIN, CP' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT ; ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT ; A ? 2 polyribonucleotide no no GAA GAA R ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 TYR n 1 3 SER n 1 4 ILE n 1 5 THR n 1 6 THR n 1 7 PRO n 1 8 SER n 1 9 GLN n 1 10 PHE n 1 11 VAL n 1 12 PHE n 1 13 LEU n 1 14 SER n 1 15 SER n 1 16 ALA n 1 17 TRP n 1 18 ALA n 1 19 ASP n 1 20 PRO n 1 21 ILE n 1 22 GLU n 1 23 LEU n 1 24 ILE n 1 25 ASN n 1 26 LEU n 1 27 CYS n 1 28 THR n 1 29 ASN n 1 30 ALA n 1 31 LEU n 1 32 GLY n 1 33 ASN n 1 34 GLN n 1 35 PHE n 1 36 GLN n 1 37 THR n 1 38 GLN n 1 39 GLN n 1 40 ALA n 1 41 ARG n 1 42 THR n 1 43 VAL n 1 44 VAL n 1 45 GLN n 1 46 ARG n 1 47 GLN n 1 48 PHE n 1 49 SER n 1 50 GLU n 1 51 VAL n 1 52 TRP n 1 53 LYS n 1 54 PRO n 1 55 SER n 1 56 PRO n 1 57 GLN n 1 58 VAL n 1 59 THR n 1 60 VAL n 1 61 ARG n 1 62 PHE n 1 63 PRO n 1 64 ASP n 1 65 SER n 1 66 ASP n 1 67 PHE n 1 68 LYS n 1 69 VAL n 1 70 TYR n 1 71 ARG n 1 72 TYR n 1 73 ASN n 1 74 ALA n 1 75 VAL n 1 76 LEU n 1 77 ASP n 1 78 PRO n 1 79 LEU n 1 80 VAL n 1 81 THR n 1 82 ALA n 1 83 LEU n 1 84 LEU n 1 85 GLY n 1 86 ALA n 1 87 PHE n 1 88 ASP n 1 89 THR n 1 90 ARG n 1 91 ASN n 1 92 ARG n 1 93 ILE n 1 94 ILE n 1 95 GLU n 1 96 VAL n 1 97 GLU n 1 98 ASN n 1 99 GLN n 1 100 ALA n 1 101 ASN n 1 102 PRO n 1 103 THR n 1 104 THR n 1 105 ALA n 1 106 GLU n 1 107 THR n 1 108 LEU n 1 109 ASP n 1 110 ALA n 1 111 THR n 1 112 ARG n 1 113 ARG n 1 114 VAL n 1 115 ASP n 1 116 ASP n 1 117 ALA n 1 118 THR n 1 119 VAL n 1 120 ALA n 1 121 ILE n 1 122 ARG n 1 123 SER n 1 124 ALA n 1 125 ILE n 1 126 ASN n 1 127 ASN n 1 128 LEU n 1 129 ILE n 1 130 VAL n 1 131 GLU n 1 132 LEU n 1 133 ILE n 1 134 ARG n 1 135 GLY n 1 136 THR n 1 137 GLY n 1 138 SER n 1 139 TYR n 1 140 ASN n 1 141 ARG n 1 142 SER n 1 143 SER n 1 144 PHE n 1 145 GLU n 1 146 SER n 1 147 SER n 1 148 SER n 1 149 GLY n 1 150 LEU n 1 151 VAL n 1 152 TRP n 1 153 THR n 1 154 SER n 1 155 GLY n 1 156 PRO n 1 157 ALA n 1 158 THR n 2 1 G n 2 2 A n 2 3 A n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'TOBACCO MOSAIC VIRUS' 12242 ? ? VULGARE ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'TOBACCO MOSAIC VIRUS' 12242 ? ? VULGARE ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP CAPSD_TMV 1 ? ? P69687 ? 2 PDB 4UDV 2 ? ? 4UDV ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4UDV A 1 ? 158 ? P69687 2 ? 159 ? 1 158 2 2 4UDV R 1 ? 3 ? 4UDV 4 ? 6 ? 4 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4UDV _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 4UDV _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 3.35 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1206 _refine_hist.pdbx_number_atoms_nucleic_acid 67 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1273 _refine_hist.d_res_high 3.35 _refine_hist.d_res_low . # _struct.entry_id 4UDV _struct.title 'Cryo-EM structure of TMV at 3.35 A resolution' _struct.pdbx_descriptor 'CAPSID PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4UDV _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'VIRAL PROTEIN, DIRECT ELECTRON DETECTORS, SINGLE PARTICLE HELICAL RECONSTRUCTION, HIGH RESOLUTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 10 ? SER A 14 ? PHE A 10 SER A 14 5 ? 5 HELX_P HELX_P2 2 ASP A 19 ? ASN A 29 ? ASP A 19 ASN A 29 1 ? 11 HELX_P HELX_P3 3 ALA A 30 ? GLY A 32 ? ALA A 30 GLY A 32 5 ? 3 HELX_P HELX_P4 4 THR A 37 ? SER A 49 ? THR A 37 SER A 49 1 ? 13 HELX_P HELX_P5 5 VAL A 75 ? PHE A 87 ? VAL A 75 PHE A 87 1 ? 13 HELX_P HELX_P6 6 ARG A 92 ? GLU A 97 ? ARG A 92 GLU A 97 1 ? 6 HELX_P HELX_P7 7 THR A 103 ? ILE A 133 ? THR A 103 ILE A 133 1 ? 31 HELX_P HELX_P8 8 SER A 142 ? GLY A 149 ? SER A 142 GLY A 149 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 TRP A 17 ? ALA A 18 ? TRP A 17 ALA A 18 AA 2 LYS A 68 ? TYR A 70 ? LYS A 68 TYR A 70 AA 3 SER A 138 ? TYR A 139 ? SER A 138 TYR A 139 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ALA A 18 ? N ALA A 18 O VAL A 69 ? O VAL A 69 AA 2 3 N LYS A 68 ? N LYS A 68 O TYR A 139 ? O TYR A 139 # _database_PDB_matrix.entry_id 4UDV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4UDV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 TRP 52 52 52 TRP TRP A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 ARG 134 134 134 ARG ARG A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 TYR 139 139 139 TYR TYR A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 TRP 152 152 152 TRP TRP A . n A 1 153 THR 153 153 153 THR THR A . n A 1 154 SER 154 154 ? ? ? A . n A 1 155 GLY 155 155 ? ? ? A . n A 1 156 PRO 156 156 ? ? ? A . n A 1 157 ALA 157 157 ? ? ? A . n A 1 158 THR 158 158 ? ? ? A . n B 2 1 G 1 4 4 G G R . n B 2 2 A 2 5 5 A A R . n B 2 3 A 3 6 6 A A R . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? helical 98 2 'helical asymmetric unit' ? dimeric 2 3 'helical asymmetric unit, std helical frame' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-49)' A,B 2 25 A,B 3 H A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'transform to helical frame' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'helical symmetry operation' ? ? -0.98068300 0.19560383 0.00000000 0.00000 -0.19560383 -0.98068300 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -33.79200 2 'helical symmetry operation' ? ? -0.83571153 0.54916869 0.00000000 0.00000 -0.54916869 -0.83571153 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -32.38400 3 'helical symmetry operation' ? ? -0.56870542 0.82254127 0.00000000 0.00000 -0.82254127 -0.56870542 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -30.97600 4 'helical symmetry operation' ? ? -0.21865420 0.97580241 0.00000000 0.00000 -0.97580241 -0.21865420 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -29.56800 5 'helical symmetry operation' ? ? 0.16332596 0.98657216 0.00000000 0.00000 -0.98657216 0.16332596 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -28.16000 6 'helical symmetry operation' ? ? 0.52145648 0.85327788 0.00000000 0.00000 -0.85327788 0.52145648 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -26.75200 7 'helical symmetry operation' ? ? 0.80344140 0.59538384 0.00000000 0.00000 -0.59538384 0.80344140 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -25.34400 8 'helical symmetry operation' ? ? 0.96810393 0.25054897 0.00000000 0.00000 -0.25054897 0.96810393 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -23.93600 9 'helical symmetry operation' ? ? 0.99139924 -0.13087226 0.00000000 0.00000 0.13087226 0.99139924 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -22.52800 10 'helical symmetry operation' ? ? 0.86992564 -0.49318290 0.00000000 0.00000 0.49318290 0.86992564 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -21.12000 11 'helical symmetry operation' ? ? 0.62142130 -0.78347659 0.00000000 0.00000 0.78347659 0.62142130 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -19.71200 12 'helical symmetry operation' ? ? 0.28217402 -0.95936324 0.00000000 0.00000 0.95936324 0.28217402 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -18.30400 13 'helical symmetry operation' ? ? -0.09827768 -0.99515903 0.00000000 0.00000 0.99515903 -0.09827768 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -16.89600 14 'helical symmetry operation' ? ? -0.46437839 -0.88563690 0.00000000 0.00000 0.88563690 -0.46437839 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -15.48800 15 'helical symmetry operation' ? ? -0.76266833 -0.64678978 0.00000000 0.00000 0.64678978 -0.76266833 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -14.08000 16 'helical symmetry operation' ? ? -0.94958975 -0.31349529 0.00000000 0.00000 0.31349529 -0.94958975 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -12.67200 17 'helical symmetry operation' ? ? -0.99784749 0.06557729 0.00000000 0.00000 -0.06557729 -0.99784749 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -11.26400 18 'helical symmetry operation' ? ? -0.90039472 0.43507396 0.00000000 0.00000 -0.43507396 -0.90039472 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -9.85600 19 'helical symmetry operation' ? ? -0.67146196 0.74103903 0.00000000 0.00000 -0.74103903 -0.67146196 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -8.44800 20 'helical symmetry operation' ? ? -0.34447908 0.93879399 0.00000000 0.00000 -0.93879399 -0.34447908 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -7.04000 21 'helical symmetry operation' ? ? 0.03280630 0.99946173 0.00000000 0.00000 -0.99946173 0.03280630 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -5.63200 22 'helical symmetry operation' ? ? 0.40530115 0.91418323 0.00000000 0.00000 -0.91418323 0.40530115 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -4.22400 23 'helical symmetry operation' ? ? 0.71861196 0.69541128 0.00000000 0.00000 -0.69541128 0.71861196 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -2.81600 24 'helical symmetry operation' ? ? 0.92698758 0.37509201 0.00000000 0.00000 -0.37509201 0.92698758 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -1.40800 25 'helical symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 26 'helical symmetry operation' ? ? 0.92698758 -0.37509201 0.00000000 0.00000 0.37509201 0.92698758 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 1.40800 27 'helical symmetry operation' ? ? 0.71861196 -0.69541128 0.00000000 0.00000 0.69541128 0.71861196 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 2.81600 28 'helical symmetry operation' ? ? 0.40530115 -0.91418323 0.00000000 0.00000 0.91418323 0.40530115 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 4.22400 29 'helical symmetry operation' ? ? 0.03280630 -0.99946173 0.00000000 0.00000 0.99946173 0.03280630 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 5.63200 30 'helical symmetry operation' ? ? -0.34447908 -0.93879399 0.00000000 0.00000 0.93879399 -0.34447908 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 7.04000 31 'helical symmetry operation' ? ? -0.67146196 -0.74103903 0.00000000 0.00000 0.74103903 -0.67146196 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 8.44800 32 'helical symmetry operation' ? ? -0.90039472 -0.43507396 0.00000000 0.00000 0.43507396 -0.90039472 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 9.85600 33 'helical symmetry operation' ? ? -0.99784749 -0.06557729 0.00000000 0.00000 0.06557729 -0.99784749 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 11.26400 34 'helical symmetry operation' ? ? -0.94958975 0.31349529 0.00000000 0.00000 -0.31349529 -0.94958975 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 12.67200 35 'helical symmetry operation' ? ? -0.76266833 0.64678978 0.00000000 0.00000 -0.64678978 -0.76266833 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 14.08000 36 'helical symmetry operation' ? ? -0.46437839 0.88563690 0.00000000 0.00000 -0.88563690 -0.46437839 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 15.48800 37 'helical symmetry operation' ? ? -0.09827768 0.99515903 0.00000000 0.00000 -0.99515903 -0.09827768 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 16.89600 38 'helical symmetry operation' ? ? 0.28217402 0.95936324 0.00000000 0.00000 -0.95936324 0.28217402 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 18.30400 39 'helical symmetry operation' ? ? 0.62142130 0.78347659 0.00000000 0.00000 -0.78347659 0.62142130 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 19.71200 40 'helical symmetry operation' ? ? 0.86992564 0.49318290 0.00000000 0.00000 -0.49318290 0.86992564 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 21.12000 41 'helical symmetry operation' ? ? 0.99139924 0.13087226 0.00000000 0.00000 -0.13087226 0.99139924 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 22.52800 42 'helical symmetry operation' ? ? 0.96810393 -0.25054897 0.00000000 0.00000 0.25054897 0.96810393 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 23.93600 43 'helical symmetry operation' ? ? 0.80344140 -0.59538384 0.00000000 0.00000 0.59538384 0.80344140 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 25.34400 44 'helical symmetry operation' ? ? 0.52145648 -0.85327788 0.00000000 0.00000 0.85327788 0.52145648 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 26.75200 45 'helical symmetry operation' ? ? 0.16332596 -0.98657216 0.00000000 0.00000 0.98657216 0.16332596 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 28.16000 46 'helical symmetry operation' ? ? -0.21865420 -0.97580241 0.00000000 0.00000 0.97580241 -0.21865420 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 29.56800 47 'helical symmetry operation' ? ? -0.56870542 -0.82254127 0.00000000 0.00000 0.82254127 -0.56870542 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 30.97600 48 'helical symmetry operation' ? ? -0.83571153 -0.54916869 0.00000000 0.00000 0.54916869 -0.83571153 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 32.38400 49 'helical symmetry operation' ? ? -0.98068300 -0.19560383 0.00000000 0.00000 0.19560383 -0.98068300 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 33.79200 # _pdbx_helical_symmetry.entry_id 4UDV _pdbx_helical_symmetry.number_of_operations 49 _pdbx_helical_symmetry.rotation_per_n_subunits 22.030000 _pdbx_helical_symmetry.rise_per_n_subunits 1.408000 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-31 2 'Structure model' 1 1 2015-02-18 3 'Structure model' 1 2 2018-10-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_radiation 2 3 'Structure model' diffrn_radiation_wavelength 3 3 'Structure model' em_single_particle_entity 4 3 'Structure model' em_software 5 3 'Structure model' entity # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_software.image_processing_id' 2 3 'Structure model' '_entity.src_method' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 4UDV _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value 90 _em_3d_fitting.target_criteria 'REAL SPACE CORRELATION' _em_3d_fitting.details 'METHOD--LOCAL AND GLOBAL CORRELATION REFINEMENT PROTOCOL--FIBRE DIFFRACTION' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 4UDV _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.num_particles 450000 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'PROJECTION MATCHING' _em_3d_reconstruction.nominal_pixel_size 1.062 _em_3d_reconstruction.actual_pixel_size 1.062 _em_3d_reconstruction.resolution 3.35 _em_3d_reconstruction.magnification_calibration 'LAYER LINE CORRELATION' _em_3d_reconstruction.details 'SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2842. (DEPOSITION ID: 12988).' _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '50 MM NAPO4' _em_buffer.pH 7 _em_buffer.details '50 MM NAPO4' # _em_entity_assembly.id 1 _em_entity_assembly.name 'TOBACCO MOSAIC VIRUS' _em_entity_assembly.type VIRUS _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list ? _em_entity_assembly.source ? # _em_image_scans.entry_id 4UDV _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 109 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 4UDV _em_imaging.id 1 _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_id 1 _em_imaging.date 2013-10-16 _em_imaging.temperature ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 4500 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2.7 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 75000 _em_imaging.calibrated_magnification 131827 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 300 _em_imaging.details 'NANOPROBE MODE, DOSE RATE CA 41 E- PX S ON THE CAMERA LEVEL, FULLY AUTOMATED ACQUISITION USING FEI EPU SOFTWARE' _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'HOLEY CARBON' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 4UDV _em_vitrification.id 1 _em_vitrification.instrument 'FEI VITROBOT MARK III' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details ;CRYOGEN - ETHANE, HUMIDITY - 90 PERCENT, TEMPERATURE - 95 K, INSTRUMENT - FEI VITROBOT MARK III PROCEDURE - BLOT FOR 8 SECONDS WITH AN OFFSET OF -2 MM CA 30-45 SECONDS AFTER SAMPLE APPLICATION ; _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 4UDV _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method HELICAL # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 5 ? ? -95.14 -78.62 2 1 SER A 8 ? ? -89.39 34.42 3 1 LEU A 13 ? ? -97.76 34.14 4 1 SER A 15 ? ? -65.28 83.03 5 1 ALA A 16 ? ? -150.03 19.81 6 1 SER A 55 ? ? -129.42 -59.34 7 1 GLN A 99 ? ? -117.14 -92.36 8 1 ARG A 141 ? ? 86.84 3.29 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 154 ? A SER 154 2 1 Y 1 A GLY 155 ? A GLY 155 3 1 Y 1 A PRO 156 ? A PRO 156 4 1 Y 1 A ALA 157 ? A ALA 157 5 1 Y 1 A THR 158 ? A THR 158 # _em_ctf_correction.id 1 _em_ctf_correction.details 'CTFTILT (SPECIFIC FOR EACH SEGMENT)' _em_ctf_correction.type ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 30.7 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'FEI FALCON II (4k x 4k)' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_software.id 1 _em_software.name SPRING _em_software.version ? _em_software.category RECONSTRUCTION _em_software.details ? _em_software.image_processing_id 1 _em_software.imaging_id ? _em_software.fitting_id ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 11 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? #