HEADER HYDROLASE 18-DEC-14 4UEM TITLE UCH-L5 IN COMPLEX WITH THE RPN13 DEUBAD DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UCH-L5, UBIQUITIN C-TERMINAL HYDROLASE UCH37, UBIQUITIN COMPND 5 THIOESTERASE L5; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: ISOFORM 3; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PROTEASOMAL UBIQUITIN RECEPTOR ADRM1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: DEUBAD DOMAIN, RESIDUES 266-388; COMPND 13 SYNONYM: 110 KDA CELL MEMBRANE GLYCOPROTEIN, GP110, ADHESION- COMPND 14 REGULATING MOLECULE 1, ARM-1, PROTEASOME REGULATORY PARTICLE NON- COMPND 15 ATPASE 13, HRPN13, RPN13 HOMOLOG; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX VECTOR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-NKI-3C-LIC; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 19 EXPRESSION_SYSTEM_VECTOR: PCDF VECTOR; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PCDF-NKI-HIS-3C-LIC KEYWDS HYDROLASE, DEUBIQUITINATING ENZYME, DUB, PROTEASOME EXPDTA X-RAY DIFFRACTION AUTHOR D.D.SAHTOE,W.J.VAN DIJK,F.EL OUALID,R.EKKEBUS,H.OVAA,T.K.SIXMA REVDAT 4 20-DEC-23 4UEM 1 REMARK REVDAT 3 03-APR-19 4UEM 1 REMARK REVDAT 2 25-MAR-15 4UEM 1 JRNL REVDAT 1 04-MAR-15 4UEM 0 JRNL AUTH D.D.SAHTOE,W.J.VAN DIJK,F.EL OUALID,R.EKKEBUS,H.OVAA, JRNL AUTH 2 T.K.SIXMA JRNL TITL MECHANISM OF UCH-L5 ACTIVATION AND INHIBITION BY DEUBAD JRNL TITL 2 DOMAINS IN RPN13 AND INO80G. JRNL REF MOL.CELL V. 57 887 2015 JRNL REFN ISSN 1097-2765 JRNL PMID 25702870 JRNL DOI 10.1016/J.MOLCEL.2014.12.039 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 13580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8545 - 4.8163 0.95 2647 127 0.2005 0.2223 REMARK 3 2 4.8163 - 3.8257 0.98 2622 123 0.2103 0.3034 REMARK 3 3 3.8257 - 3.3429 0.99 2571 122 0.2610 0.2716 REMARK 3 4 3.3429 - 3.0376 0.99 2558 151 0.3019 0.3838 REMARK 3 5 3.0376 - 2.8201 0.97 2507 152 0.3339 0.3930 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 77.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3042 REMARK 3 ANGLE : 0.735 4107 REMARK 3 CHIRALITY : 0.028 459 REMARK 3 PLANARITY : 0.003 539 REMARK 3 DIHEDRAL : 12.787 1146 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 7:142) REMARK 3 ORIGIN FOR THE GROUP (A): 124.5456 91.0564 122.3952 REMARK 3 T TENSOR REMARK 3 T11: 0.5535 T22: 0.2942 REMARK 3 T33: 0.4088 T12: 0.0414 REMARK 3 T13: 0.0138 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 4.9977 L22: 6.2911 REMARK 3 L33: 6.2566 L12: 1.5410 REMARK 3 L13: -0.3280 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.1163 S12: 0.2012 S13: -0.2359 REMARK 3 S21: -0.3922 S22: 0.1416 S23: -0.3675 REMARK 3 S31: 0.1245 S32: 0.1817 S33: -0.0414 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 143:211) REMARK 3 ORIGIN FOR THE GROUP (A): 129.8080 89.1509 129.1914 REMARK 3 T TENSOR REMARK 3 T11: 0.4897 T22: 0.3883 REMARK 3 T33: 0.5745 T12: -0.0136 REMARK 3 T13: -0.1271 T23: 0.0487 REMARK 3 L TENSOR REMARK 3 L11: 3.8718 L22: 3.7718 REMARK 3 L33: 5.3564 L12: 1.3387 REMARK 3 L13: -0.9731 L23: -1.5315 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: -0.4747 S13: -0.4125 REMARK 3 S21: 0.5961 S22: -0.3436 S23: -0.6989 REMARK 3 S31: 0.1180 S32: 0.8115 S33: 0.2706 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 217:316) REMARK 3 ORIGIN FOR THE GROUP (A): 133.5052 112.0080 117.5688 REMARK 3 T TENSOR REMARK 3 T11: 0.8380 T22: 0.4985 REMARK 3 T33: 0.5471 T12: -0.1022 REMARK 3 T13: -0.0436 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 1.2098 L22: 0.7182 REMARK 3 L33: 1.5377 L12: -0.5346 REMARK 3 L13: 0.1271 L23: 0.6776 REMARK 3 S TENSOR REMARK 3 S11: -0.0419 S12: 0.0289 S13: 0.0214 REMARK 3 S21: 0.1477 S22: 0.1343 S23: -0.0612 REMARK 3 S31: -0.7198 S32: 0.3177 S33: -0.1092 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 287:297) REMARK 3 ORIGIN FOR THE GROUP (A): 155.3077 108.4240 103.3493 REMARK 3 T TENSOR REMARK 3 T11: 1.0402 T22: 1.2605 REMARK 3 T33: 1.1899 T12: 0.0861 REMARK 3 T13: 0.2495 T23: 0.0516 REMARK 3 L TENSOR REMARK 3 L11: 0.1526 L22: 0.7112 REMARK 3 L33: 0.7299 L12: 0.2605 REMARK 3 L13: -0.3144 L23: -0.6897 REMARK 3 S TENSOR REMARK 3 S11: 0.1009 S12: 0.9682 S13: -1.1421 REMARK 3 S21: -0.2707 S22: 0.2764 S23: -0.7508 REMARK 3 S31: -0.2856 S32: 0.9580 S33: 0.0637 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 298:384) REMARK 3 ORIGIN FOR THE GROUP (A): 147.2903 105.1054 94.8974 REMARK 3 T TENSOR REMARK 3 T11: 0.6276 T22: 0.8363 REMARK 3 T33: 0.4897 T12: -0.1402 REMARK 3 T13: -0.1371 T23: 0.0627 REMARK 3 L TENSOR REMARK 3 L11: 6.5311 L22: 5.8579 REMARK 3 L33: 7.7823 L12: 0.6597 REMARK 3 L13: -0.2829 L23: -1.4126 REMARK 3 S TENSOR REMARK 3 S11: 0.2131 S12: -0.2192 S13: 0.1515 REMARK 3 S21: 0.5914 S22: 0.0220 S23: -0.8217 REMARK 3 S31: -0.8961 S32: 1.3207 S33: -0.3337 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UEM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1290062600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13635 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.820 REMARK 200 RESOLUTION RANGE LOW (A) : 33.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3IHR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS-PROPANE PH 6.4, 230 MM REMARK 280 NABR, 21% PEG3350. 4 DEGREES CELSIUS, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.29800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.30800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.53350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.30800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.29800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.53350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 PHE A 151 REMARK 465 ASP A 152 REMARK 465 THR A 153 REMARK 465 LYS A 154 REMARK 465 THR A 155 REMARK 465 SER A 156 REMARK 465 ALA A 157 REMARK 465 LYS A 158 REMARK 465 GLU A 159 REMARK 465 GLU A 160 REMARK 465 ASP A 161 REMARK 465 ALA A 162 REMARK 465 PHE A 163 REMARK 465 TYR A 211 REMARK 465 SER A 212 REMARK 465 GLU A 213 REMARK 465 GLY A 214 REMARK 465 GLU A 215 REMARK 465 ILE A 216 REMARK 465 GLU A 245 REMARK 465 PRO A 246 REMARK 465 MET A 247 REMARK 465 ASP A 248 REMARK 465 THR A 249 REMARK 465 ASP A 250 REMARK 465 GLN A 251 REMARK 465 GLY A 252 REMARK 465 ASN A 253 REMARK 465 LYS A 316 REMARK 465 GLU A 317 REMARK 465 LYS A 318 REMARK 465 GLN A 319 REMARK 465 ASN A 320 REMARK 465 ALA A 321 REMARK 465 LYS A 322 REMARK 465 LYS A 323 REMARK 465 ALA A 324 REMARK 465 GLN A 325 REMARK 465 GLU A 326 REMARK 465 THR A 327 REMARK 465 LYS A 328 REMARK 465 GLY B 262 REMARK 465 PRO B 263 REMARK 465 GLY B 264 REMARK 465 SER B 265 REMARK 465 ASP B 266 REMARK 465 LEU B 267 REMARK 465 GLN B 268 REMARK 465 SER B 269 REMARK 465 ILE B 270 REMARK 465 LEU B 271 REMARK 465 ALA B 272 REMARK 465 THR B 273 REMARK 465 MET B 274 REMARK 465 ASN B 275 REMARK 465 VAL B 276 REMARK 465 PRO B 277 REMARK 465 ALA B 278 REMARK 465 GLY B 279 REMARK 465 PRO B 280 REMARK 465 ALA B 281 REMARK 465 GLY B 282 REMARK 465 GLY B 283 REMARK 465 GLN B 284 REMARK 465 GLN B 285 REMARK 465 VAL B 286 REMARK 465 ALA B 385 REMARK 465 LYS B 386 REMARK 465 PRO B 387 REMARK 465 GLU B 388 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 227 OH TYR A 231 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 70 14.30 -142.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UEL RELATED DB: PDB REMARK 900 UCH-L5 IN COMPLEX WITH UBIQUITIN-PROPARGYL BOUND TO THE RPN13 REMARK 900 DEUBAD DOMAIN REMARK 900 RELATED ID: 4UF5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UCH-L5 IN COMPLEX WITH INHIBITORY FRAGMENT OF REMARK 900 INO80G REMARK 900 RELATED ID: 4UF6 RELATED DB: PDB REMARK 900 UCH-L5 IN COMPLEX WITH UBIQUITIN-PROPARGYL BOUND TO AN ACTIVATING REMARK 900 FRAGMENT OF INO80G REMARK 999 REMARK 999 SEQUENCE REMARK 999 ISOFORM 3 DBREF 4UEM A 1 328 UNP Q9Y5K5 UCHL5_HUMAN 1 328 DBREF 4UEM B 266 388 UNP Q16186 ADRM1_HUMAN 266 388 SEQADV 4UEM GLY A -2 UNP Q9Y5K5 EXPRESSION TAG SEQADV 4UEM PRO A -1 UNP Q9Y5K5 EXPRESSION TAG SEQADV 4UEM GLY A 0 UNP Q9Y5K5 EXPRESSION TAG SEQADV 4UEM GLY B 262 UNP Q16186 EXPRESSION TAG SEQADV 4UEM PRO B 263 UNP Q16186 EXPRESSION TAG SEQADV 4UEM GLY B 264 UNP Q16186 EXPRESSION TAG SEQADV 4UEM SER B 265 UNP Q16186 EXPRESSION TAG SEQRES 1 A 331 GLY PRO GLY MET THR GLY ASN ALA GLY GLU TRP CYS LEU SEQRES 2 A 331 MET GLU SER ASP PRO GLY VAL PHE THR GLU LEU ILE LYS SEQRES 3 A 331 GLY PHE GLY CYS ARG GLY ALA GLN VAL GLU GLU ILE TRP SEQRES 4 A 331 SER LEU GLU PRO GLU ASN PHE GLU LYS LEU LYS PRO VAL SEQRES 5 A 331 HIS GLY LEU ILE PHE LEU PHE LYS TRP GLN PRO GLY GLU SEQRES 6 A 331 GLU PRO ALA GLY SER VAL VAL GLN ASP SER ARG LEU ASP SEQRES 7 A 331 THR ILE PHE PHE ALA LYS GLN VAL ILE ASN ASN ALA CYS SEQRES 8 A 331 ALA THR GLN ALA ILE VAL SER VAL LEU LEU ASN CYS THR SEQRES 9 A 331 HIS GLN ASP VAL HIS LEU GLY GLU THR LEU SER GLU PHE SEQRES 10 A 331 LYS GLU PHE SER GLN SER PHE ASP ALA ALA MET LYS GLY SEQRES 11 A 331 LEU ALA LEU SER ASN SER ASP VAL ILE ARG GLN VAL HIS SEQRES 12 A 331 ASN SER PHE ALA ARG GLN GLN MET PHE GLU PHE ASP THR SEQRES 13 A 331 LYS THR SER ALA LYS GLU GLU ASP ALA PHE HIS PHE VAL SEQRES 14 A 331 SER TYR VAL PRO VAL ASN GLY ARG LEU TYR GLU LEU ASP SEQRES 15 A 331 GLY LEU ARG GLU GLY PRO ILE ASP LEU GLY ALA CYS ASN SEQRES 16 A 331 GLN ASP ASP TRP ILE SER ALA VAL ARG PRO VAL ILE GLU SEQRES 17 A 331 LYS ARG ILE GLN LYS TYR SER GLU GLY GLU ILE ARG PHE SEQRES 18 A 331 ASN LEU MET ALA ILE VAL SER ASP ARG LYS MET ILE TYR SEQRES 19 A 331 GLU GLN LYS ILE ALA GLU LEU GLN ARG GLN LEU ALA GLU SEQRES 20 A 331 GLU PRO MET ASP THR ASP GLN GLY ASN SER MET LEU SER SEQRES 21 A 331 ALA ILE GLN SER GLU VAL ALA LYS ASN GLN MET LEU ILE SEQRES 22 A 331 GLU GLU GLU VAL GLN LYS LEU LYS ARG TYR LYS ILE GLU SEQRES 23 A 331 ASN ILE ARG ARG LYS HIS ASN TYR LEU PRO PHE ILE MET SEQRES 24 A 331 GLU LEU LEU LYS THR LEU ALA GLU HIS GLN GLN LEU ILE SEQRES 25 A 331 PRO LEU VAL GLU LYS ALA LYS GLU LYS GLN ASN ALA LYS SEQRES 26 A 331 LYS ALA GLN GLU THR LYS SEQRES 1 B 127 GLY PRO GLY SER ASP LEU GLN SER ILE LEU ALA THR MET SEQRES 2 B 127 ASN VAL PRO ALA GLY PRO ALA GLY GLY GLN GLN VAL ASP SEQRES 3 B 127 LEU ALA SER VAL LEU THR PRO GLU ILE MET ALA PRO ILE SEQRES 4 B 127 LEU ALA ASN ALA ASP VAL GLN GLU ARG LEU LEU PRO TYR SEQRES 5 B 127 LEU PRO SER GLY GLU SER LEU PRO GLN THR ALA ASP GLU SEQRES 6 B 127 ILE GLN ASN THR LEU THR SER PRO GLN PHE GLN GLN ALA SEQRES 7 B 127 LEU GLY MET PHE SER ALA ALA LEU ALA SER GLY GLN LEU SEQRES 8 B 127 GLY PRO LEU MET CYS GLN PHE GLY LEU PRO ALA GLU ALA SEQRES 9 B 127 VAL GLU ALA ALA ASN LYS GLY ASP VAL GLU ALA PHE ALA SEQRES 10 B 127 LYS ALA MET GLN ASN ASN ALA LYS PRO GLU HELIX 1 1 ASP A 14 PHE A 25 1 12 HELIX 2 2 GLU A 39 GLU A 44 5 6 HELIX 3 3 SER A 72 ILE A 77 1 6 HELIX 4 4 ILE A 84 ASN A 86 5 3 HELIX 5 5 ALA A 87 LEU A 98 1 12 HELIX 6 6 LEU A 107 GLN A 119 1 13 HELIX 7 7 ASP A 122 ASN A 132 1 11 HELIX 8 8 SER A 133 PHE A 143 1 11 HELIX 9 9 TRP A 196 LYS A 210 1 15 HELIX 10 10 ASP A 226 GLU A 244 1 19 HELIX 11 11 SER A 254 HIS A 289 1 36 HELIX 12 12 TYR A 291 HIS A 305 1 15 HELIX 13 13 GLN A 307 ALA A 315 1 9 HELIX 14 14 ASP B 287 LEU B 292 1 6 HELIX 15 15 MET B 297 ALA B 302 1 6 HELIX 16 16 ASN B 303 LEU B 311 1 9 HELIX 17 17 PRO B 312 LEU B 314 5 3 HELIX 18 18 ALA B 324 THR B 332 1 9 HELIX 19 19 SER B 333 SER B 349 1 17 HELIX 20 20 LEU B 352 PHE B 359 1 8 HELIX 21 21 PRO B 362 GLY B 372 1 11 HELIX 22 22 ASP B 373 ASN B 384 1 12 SHEET 1 AA 6 ALA A 30 ILE A 35 0 SHEET 2 AA 6 PHE A 218 SER A 225 -1 O LEU A 220 N ILE A 35 SHEET 3 AA 6 VAL A 49 PHE A 56 -1 N HIS A 50 O ILE A 223 SHEET 4 AA 6 PHE A 165 VAL A 171 -1 O VAL A 166 N PHE A 54 SHEET 5 AA 6 ARG A 174 ASP A 179 -1 O ARG A 174 N VAL A 171 SHEET 6 AA 6 ILE A 186 ALA A 190 -1 O ILE A 186 N GLU A 177 CISPEP 1 LYS A 47 PRO A 48 0 0.73 CRYST1 56.596 97.067 100.616 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017669 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009939 0.00000