HEADER OXIDOREDUCTASE 22-MAR-15 4UGX TITLE STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH TITLE 2 N-(3-((ETHYL(2-(3-FLUOROPHENYL)ETHYL)AMINO)METHYL)PHENYL)THIOPHENE-2- TITLE 3 CARBOXIMIDAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRIC OXIDE SYNTHASE OXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NOSOXY-LIKE PROTEIN, NITRIC OXIDE SYNTHASE; COMPND 5 EC: 1.14.13.165; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 ATCC: 23857; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS OXIDOREDUCTASE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.K.HOLDEN,T.L.POULOS REVDAT 5 10-JAN-24 4UGX 1 REMARK REVDAT 4 06-FEB-19 4UGX 1 REMARK REVDAT 3 30-JAN-19 4UGX 1 REMARK REVDAT 2 22-JUL-15 4UGX 1 JRNL REVDAT 1 24-JUN-15 4UGX 0 JRNL AUTH J.K.HOLDEN,D.DEJAM,M.C.LEWIS,H.HUANG,S.KANG,Q.JING,F.XUE, JRNL AUTH 2 R.B.SILVERMAN,T.L.POULOS JRNL TITL INHIBITOR BOUND CRYSTAL STRUCTURES OF BACTERIAL NITRIC OXIDE JRNL TITL 2 SYNTHASE. JRNL REF BIOCHEMISTRY V. 54 4075 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26062720 JRNL DOI 10.1021/ACS.BIOCHEM.5B00431 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 40897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8833 - 4.5848 1.00 2795 151 0.1564 0.1790 REMARK 3 2 4.5848 - 3.6400 1.00 2655 148 0.1306 0.1565 REMARK 3 3 3.6400 - 3.1802 1.00 2639 135 0.1487 0.1668 REMARK 3 4 3.1802 - 2.8895 1.00 2636 125 0.1545 0.2045 REMARK 3 5 2.8895 - 2.6825 1.00 2605 133 0.1538 0.2319 REMARK 3 6 2.6825 - 2.5243 1.00 2596 123 0.1553 0.1842 REMARK 3 7 2.5243 - 2.3979 0.99 2557 164 0.1553 0.2118 REMARK 3 8 2.3979 - 2.2936 0.99 2540 159 0.1636 0.2086 REMARK 3 9 2.2936 - 2.2053 0.99 2572 158 0.1693 0.2182 REMARK 3 10 2.2053 - 2.1292 0.99 2549 114 0.1821 0.1993 REMARK 3 11 2.1292 - 2.0626 0.99 2557 129 0.2070 0.2659 REMARK 3 12 2.0626 - 2.0037 0.99 2565 119 0.2087 0.2329 REMARK 3 13 2.0037 - 1.9509 0.99 2530 144 0.2281 0.2388 REMARK 3 14 1.9509 - 1.9033 0.99 2506 158 0.2639 0.3434 REMARK 3 15 1.9033 - 1.8601 0.98 2484 151 0.3029 0.3317 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3136 REMARK 3 ANGLE : 1.498 4263 REMARK 3 CHIRALITY : 0.090 438 REMARK 3 PLANARITY : 0.006 545 REMARK 3 DIHEDRAL : 14.477 1166 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 5.6864 19.7103 22.8147 REMARK 3 T TENSOR REMARK 3 T11: 0.2160 T22: 0.2083 REMARK 3 T33: 0.2239 T12: -0.0199 REMARK 3 T13: 0.0168 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.8751 L22: 1.5764 REMARK 3 L33: 1.0642 L12: 0.2079 REMARK 3 L13: 0.1476 L23: -0.2123 REMARK 3 S TENSOR REMARK 3 S11: -0.0655 S12: 0.1290 S13: 0.0837 REMARK 3 S21: -0.2103 S22: 0.0733 S23: -0.0705 REMARK 3 S31: -0.1387 S32: 0.0768 S33: -0.0055 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UGX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40955 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 37.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 1.14000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4D3T REMARK 200 REMARK 200 REMARK: CC ONE HALF FOR FULL DATA SET AT 0.997. CC ONE HALF FOR REMARK 200 HIGH RESOLUTION SHELL AT 0.545 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60 MM BIS-TRIS METHANE, 40 MM CITRIC REMARK 280 ACID, 20% PEG3350, 1.9% 1-PROPANOL, PH 7.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.29650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.46350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.29650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.46350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2242 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 117 -76.67 -107.29 REMARK 500 ALA A 233 69.20 -157.70 REMARK 500 ARG A 247 -67.08 -128.44 REMARK 500 ARG A 254 -123.46 -117.53 REMARK 500 SER A 335 51.12 35.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 66 SG REMARK 620 2 HEM A 901 NA 98.2 REMARK 620 3 HEM A 901 NB 93.8 86.1 REMARK 620 4 HEM A 901 NC 97.5 164.0 90.2 REMARK 620 5 HEM A 901 ND 101.3 89.3 164.7 90.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H4B A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1365 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1366 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5H4 A 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UG5 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(2-(5-(2-(2-AMINO-6-METHYLPYRIDIN- 4-YL)ETHYL)PYRIDIN-3-YL) REMARK 900 ETHYL)-4-METHYLPYRIDIN-2- AMINE REMARK 900 RELATED ID: 4UG6 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-(PYRIDINE-3,5-DIYLDIETHANE-2,1- DIYL)BIS(4-METHYLPYRIDIN- REMARK 900 2-AMINE) REMARK 900 RELATED ID: 4UG7 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 3,5-BIS(2-(6-AMINO-4-METHYLPYRIDIN- 2-YL)ETHYL)BENZONITRILE REMARK 900 RELATED ID: 4UG8 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(5-((3R,4R)-4-((6-AZANYL-4-METHYL -PYRIDIN-2-YL)METHYL) REMARK 900 PYRROLIDIN-3-YL)OXYPENTYL)-4- METHYL-PYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UG9 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-((4-(3-AMINOPROPYL)BENZENE-1,3- DIYL)DIETHANE-2,1-DIYL) REMARK 900 BIS(4-METHYLPYRIDIN-2-AMINE) REMARK 900 RELATED ID: 4UGA RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-((3-(((2-(3-FLUOROPHENYL)ETHYL)AMINO )METHYL)PHENOXY)METHYL)- REMARK 900 4-METHYLPYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGB RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(((5-(((2-(3-FLUOROPHENYL)ETHYL)AMINO )METHYL)PYRIDIN-3-YL) REMARK 900 OXY)METHYL)-4-METHYLPYRIDIN-2- AMINE REMARK 900 RELATED ID: 4UGC RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-(((2S)-3-AMINOPROPANE-1,2-DIYL) BIS(OXYMETHANEDIYL))BIS(4- REMARK 900 METHYLPYRIDIN-2-AMINE) REMARK 900 RELATED ID: 4UGD RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-((((2S)-1-AMINO-4-((6-AMINO-4- METHYLPYRIDIN-2-YL)METHOXY) REMARK 900 BUTAN-2-YL)OXY)METHYL)-4 -METHYLPYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGE RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 4-METHYL-6-((3-(PIPERIDIN-4-YLMETHOXY) PHENOXY)METHYL)PYRIDIN- REMARK 900 2-AMINE REMARK 900 RELATED ID: 4UGF RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-((((3S, 5R)-5-(((6-AMINO-4- METHYLPYRIDIN-2-YL)METHOXY) REMARK 900 METHYL)PYRROLIDIN-3-YL)OXY )METHYL)-4-METHYLPYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGG RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH (R)-6-(2-AMINO-2-(3-(2-(6-AMINO-4 -METHYLPYRIDIN-2-YL)ETHYL) REMARK 900 PHENYL)ETHYL)-4-METHYLPYRIDIN -2-AMINE REMARK 900 RELATED ID: 4UGH RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N1-(3-(2-(6-AMINO-4-METHYLPYRIDIN-2- YL)ETHYL)PHENYL)-N1,N2- REMARK 900 DIMETHYLETHANE-1,2-DIAMINE REMARK 900 RELATED ID: 4UGI RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N1-(6-(2-(6-AMINO-4-METHYLPYRIDIN-2- YL)ETHYL)PYRIDIN-2-YL)-N1, REMARK 900 N2-DIMETHYLETHANE-1,2- DIAMINE REMARK 900 RELATED ID: 4UGJ RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 3-(2-(6-AMINO-4-METHYLPYRIDIN-2-YL) ETHYL)-5-(METHYL(2- REMARK 900 (METHYLAMINO)ETHYL)AMINO)BENZONITRILE REMARK 900 RELATED ID: 4UGK RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(2-(5-(2-(DIMETHYLAMINO)ETHYL)PYRIDIN -3-YL)ETHYL)-4- REMARK 900 METHYLPYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGL RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N1-(3-(2-(6-AMINO-4-METHYLPYRIDIN-2- YL)ETHYL)-5-FLUOROPHENYL)- REMARK 900 N1-CYCLOPROPYL-N2-METHYLETHANE -1,2-DIAMINE REMARK 900 RELATED ID: 4UGM RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N,N'-(ETHANE-1,2-DIYLDIBENZENE-3,1- DIYL)DITHIOPHENE-2- REMARK 900 CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGN RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH (S)-N-(3-(((PYRROLIDIN-2-YLMETHYL)AMINO )METHYL)PHENYL) REMARK 900 THIOPHENE-2-CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGO RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N-(4-(2-(ETHYL(3-(((E)-IMINO(THIOPHEN -2-YL)METHYL)AMINO) REMARK 900 BENZYL)AMINO)ETHYL)PHENYL) THIOPHENE-2-CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGP RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N',N'-(((2R)-3-AMINOPROPANE-1,2-DIYL ) REMARK 900 BIS(OXYMETHANEDIYLBENZENE-3,1-DIYL))DITHIOPHENE-2- CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGQ RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N,N''-(((2S)-3-AMINOPROPANE-1,2-DIYL ) REMARK 900 BIS(OXYMETHANEDIYLBENZENE-3,1-DIYL))DITHIOPHENE-2- CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGR RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N-(3-(((2S,4S)-4-((3-((C-THIOPHEN-2 -YLCARBONIMIDOYL)AMINO) REMARK 900 PHENYL)METHOXY)PYRROLIDIN-2-YL) METHOXYMETHYL)PHENYL)THIOPHENE-2- REMARK 900 CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGS RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N,N'-(ETHANE-1,2-DIYLBIS(OXYBENZENE-3 ,1-DIYL))DITHIOPHENE-2- REMARK 900 CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGT RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N-(3-((PYRROLIDIN-3-YLOXY)METHYL)PHENYL )THIOPHENE-2- REMARK 900 CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGU RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N'-(4-(((2S,4R)-4-(3-((C-THIOPHEN-2 -YLCARBONIMIDOYL)AMINO) REMARK 900 PHENOXY)PYRROLIDIN-2-YL)METHOXY) PHENYL)THIOPHENE-2-CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGV RELATED DB: PDB REMARK 900 STRUCTURE OF Y357F BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN REMARK 900 COMPLEX WITH ARGININE AND 5,6,7,8- TETRAHYDROBIOPTERIN REMARK 900 RELATED ID: 4UGW RELATED DB: PDB REMARK 900 STRUCTURE OF Y357F BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN REMARK 900 COMPLEX WITH 6-(5-((3R,4R)-4-((6- AZANYL-4-METHYL-PYRIDIN-2-YL) REMARK 900 METHYL)PYRROLIDIN-3-YL )OXYPENTYL)-4-METHYL-PYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGY RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N1-(5-(2-(6-AMINO-4-METHYLPYRIDIN-2- YL)ETHYL)PYRIDIN-3-YL)-N1, REMARK 900 N2-DIMETHYLETHANE-1,2- DIAMINE DBREF 4UGX A 1 363 UNP O34453 NOSO_BACSU 1 363 SEQADV 4UGX ALA A 25 UNP O34453 GLU 25 ENGINEERED MUTATION SEQADV 4UGX ALA A 26 UNP O34453 GLU 26 ENGINEERED MUTATION SEQADV 4UGX ALA A 316 UNP O34453 GLU 316 ENGINEERED MUTATION SEQRES 1 A 363 MET GLU GLU LYS GLU ILE LEU TRP ASN GLU ALA LYS ALA SEQRES 2 A 363 PHE ILE ALA ALA CYS TYR GLN GLU LEU GLY LYS ALA ALA SEQRES 3 A 363 GLU VAL LYS ASP ARG LEU ALA ASP ILE LYS SER GLU ILE SEQRES 4 A 363 ASP LEU THR GLY SER TYR VAL HIS THR LYS GLU GLU LEU SEQRES 5 A 363 GLU HIS GLY ALA LYS MET ALA TRP ARG ASN SER ASN ARG SEQRES 6 A 363 CYS ILE GLY ARG LEU PHE TRP ASN SER LEU ASN VAL ILE SEQRES 7 A 363 ASP ARG ARG ASP VAL ARG THR LYS GLU GLU VAL ARG ASP SEQRES 8 A 363 ALA LEU PHE HIS HIS ILE GLU THR ALA THR ASN ASN GLY SEQRES 9 A 363 LYS ILE ARG PRO THR ILE THR ILE PHE PRO PRO GLU GLU SEQRES 10 A 363 LYS GLY GLU LYS GLN VAL GLU ILE TRP ASN HIS GLN LEU SEQRES 11 A 363 ILE ARG TYR ALA GLY TYR GLU SER ASP GLY GLU ARG ILE SEQRES 12 A 363 GLY ASP PRO ALA SER CYS SER LEU THR ALA ALA CYS GLU SEQRES 13 A 363 GLU LEU GLY TRP ARG GLY GLU ARG THR ASP PHE ASP LEU SEQRES 14 A 363 LEU PRO LEU ILE PHE ARG MET LYS GLY ASP GLU GLN PRO SEQRES 15 A 363 VAL TRP TYR GLU LEU PRO ARG SER LEU VAL ILE GLU VAL SEQRES 16 A 363 PRO ILE THR HIS PRO ASP ILE GLU ALA PHE SER ASP LEU SEQRES 17 A 363 GLU LEU LYS TRP TYR GLY VAL PRO ILE ILE SER ASP MET SEQRES 18 A 363 LYS LEU GLU VAL GLY GLY ILE HIS TYR ASN ALA ALA PRO SEQRES 19 A 363 PHE ASN GLY TRP TYR MET GLY THR GLU ILE GLY ALA ARG SEQRES 20 A 363 ASN LEU ALA ASP GLU LYS ARG TYR ASP LYS LEU LYS LYS SEQRES 21 A 363 VAL ALA SER VAL ILE GLY ILE ALA ALA ASP TYR ASN THR SEQRES 22 A 363 ASP LEU TRP LYS ASP GLN ALA LEU VAL GLU LEU ASN LYS SEQRES 23 A 363 ALA VAL LEU HIS SER TYR LYS LYS GLN GLY VAL SER ILE SEQRES 24 A 363 VAL ASP HIS HIS THR ALA ALA SER GLN PHE LYS ARG PHE SEQRES 25 A 363 GLU GLU GLN ALA GLU GLU ALA GLY ARG LYS LEU THR GLY SEQRES 26 A 363 ASP TRP THR TRP LEU ILE PRO PRO ILE SER PRO ALA ALA SEQRES 27 A 363 THR HIS ILE PHE HIS ARG SER TYR ASP ASN SER ILE VAL SEQRES 28 A 363 LYS PRO ASN TYR PHE TYR GLN ASP LYS PRO TYR GLU HET HEM A 901 43 HET H4B A 902 17 HET CL A1364 1 HET GOL A1365 6 HET GOL A1366 6 HET 5H4 A 803 27 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM H4B 5,6,7,8-TETRAHYDROBIOPTERIN HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM 5H4 N-[3-({ETHYL[2-(3-FLUOROPHENYL)ETHYL]AMINO}METHYL) HETNAM 2 5H4 PHENYL]THIOPHENE-2-CARBOXIMIDAMIDE HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 H4B C9 H15 N5 O3 FORMUL 4 CL CL 1- FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 5H4 C22 H24 F N3 S FORMUL 8 HOH *263(H2 O) HELIX 1 1 GLU A 2 LEU A 22 1 21 HELIX 2 2 LYS A 24 ALA A 26 5 3 HELIX 3 3 GLU A 27 GLY A 43 1 17 HELIX 4 4 THR A 48 ASN A 62 1 15 HELIX 5 5 GLY A 68 LEU A 75 5 8 HELIX 6 6 THR A 85 ASN A 102 1 18 HELIX 7 7 ASN A 103 LYS A 105 5 3 HELIX 8 8 SER A 148 LEU A 158 1 11 HELIX 9 9 PRO A 188 VAL A 192 5 5 HELIX 10 10 ILE A 202 GLU A 209 5 8 HELIX 11 11 GLY A 241 ALA A 246 1 6 HELIX 12 12 LYS A 257 GLY A 266 1 10 HELIX 13 13 TYR A 271 ASP A 274 5 4 HELIX 14 14 LEU A 275 GLY A 296 1 22 HELIX 15 15 ASP A 301 ALA A 319 1 19 HELIX 16 16 ASP A 326 ILE A 331 1 6 HELIX 17 17 SER A 335 THR A 339 5 5 HELIX 18 18 HIS A 340 ARG A 344 5 5 SHEET 1 AA 4 ASN A 76 ASP A 79 0 SHEET 2 AA 4 THR A 109 ILE A 112 1 O ILE A 110 N ILE A 78 SHEET 3 AA 4 PHE A 235 ASN A 236 -1 O ASN A 236 N THR A 109 SHEET 4 AA 4 ILE A 217 ILE A 218 -1 O ILE A 218 N PHE A 235 SHEET 1 AB 3 VAL A 123 ILE A 125 0 SHEET 2 AB 3 LEU A 172 MET A 176 -1 O ARG A 175 N GLU A 124 SHEET 3 AB 3 VAL A 183 TYR A 185 -1 O VAL A 183 N PHE A 174 SHEET 1 AC 2 GLY A 135 SER A 138 0 SHEET 2 AC 2 GLU A 141 GLY A 144 -1 O GLU A 141 N SER A 138 SHEET 1 AD 2 GLU A 194 PRO A 196 0 SHEET 2 AD 2 LYS A 211 TYR A 213 -1 O TRP A 212 N VAL A 195 SHEET 1 AE 3 ILE A 228 TYR A 230 0 SHEET 2 AE 3 LYS A 222 VAL A 225 -1 O LEU A 223 N TYR A 230 SHEET 3 AE 3 ASN A 354 PHE A 356 -1 O ASN A 354 N GLU A 224 SHEET 1 AF 2 TYR A 239 MET A 240 0 SHEET 2 AF 2 ILE A 299 VAL A 300 1 N VAL A 300 O TYR A 239 LINK SG CYS A 66 FE HEM A 901 1555 1555 2.45 CISPEP 1 LYS A 352 PRO A 353 0 0.00 SITE 1 AC1 19 TRP A 60 SER A 63 ARG A 65 CYS A 66 SITE 2 AC1 19 PHE A 235 ASN A 236 GLY A 237 TRP A 238 SITE 3 AC1 19 GLU A 243 TRP A 329 TYR A 355 TYR A 357 SITE 4 AC1 19 5H4 A 803 H4B A 902 GOL A1365 HOH A2034 SITE 5 AC1 19 HOH A2159 HOH A2260 HOH A2261 SITE 1 AC2 13 ARG A 247 TRP A 327 THR A 328 TRP A 329 SITE 2 AC2 13 PHE A 342 HIS A 343 ARG A 344 HEM A 901 SITE 3 AC2 13 HOH A2172 HOH A2173 HOH A2240 HOH A2261 SITE 4 AC2 13 HOH A2262 SITE 1 AC3 3 GLN A 129 TYR A 239 ASN A 248 SITE 1 AC4 6 MET A 221 PHE A 356 TYR A 357 HEM A 901 SITE 2 AC4 6 HOH A2032 HOH A2263 SITE 1 AC5 6 GLY A 159 ARG A 161 TRP A 238 SER A 298 SITE 2 AC5 6 ILE A 299 GLN A 308 SITE 1 AC6 13 HIS A 128 ARG A 132 PRO A 216 ILE A 218 SITE 2 AC6 13 PHE A 235 ASN A 236 GLY A 237 TRP A 238 SITE 3 AC6 13 GLU A 243 TYR A 357 HEM A 901 HOH A2085 SITE 4 AC6 13 HOH A2255 CRYST1 80.593 94.927 62.847 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012408 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015912 0.00000