HEADER TRANSFERASE 25-MAR-15 4UHN TITLE CHARACTERIZATION OF A NOVEL TRANSAMINASE FROM PSEUDOMONAS SP. STRAIN TITLE 2 AAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: OMEGA AMINO ACID-PYRUVATE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.6.1.18; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SEQUENCE HAS AN N-TERMINAL HIS-TAG AND THROMBIN SITE COMPND 7 ADDED. IN ADDITION, IT WAS FOUND THAT TWO OF THE HISTIDINE RESIDUES COMPND 8 WERE PHOSPHORYLATED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 306; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS BIOCATALYSIS, AMINOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.WILDING,T.S.PEAT,J.NEWMAN,C.SCOTT REVDAT 3 10-JAN-24 4UHN 1 REMARK LINK REVDAT 2 19-OCT-16 4UHN 1 JRNL REVDAT 1 13-APR-16 4UHN 0 JRNL AUTH M.WILDING,T.S.PEAT,J.NEWMAN,C.SCOTT JRNL TITL A BETA-ALANINE CATABOLISM PATHWAY CONTAINING A HIGHLY JRNL TITL 2 PROMISCUOUS OMEGA-TRANSAMINASE IN THE JRNL TITL 3 12-AMINODODECANATE-DEGRADING PSEUDOMONAS SP. STRAIN AAC. JRNL REF APPL.ENVIRON.MICROBIOL. V. 82 3846 2016 JRNL REFN ISSN 0099-2240 JRNL PMID 27107110 JRNL DOI 10.1128/AEM.00665-16 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1293 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1773 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3307 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : 1.13000 REMARK 3 B33 (A**2) : -1.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.590 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3480 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3304 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4724 ; 1.979 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7593 ; 1.033 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 448 ; 5.990 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;37.738 ;24.133 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 562 ;15.702 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;21.896 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 507 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4035 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 803 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1778 ; 1.385 ; 2.297 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1776 ; 1.371 ; 2.295 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2230 ; 2.051 ; 3.866 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1702 ; 2.624 ; 2.707 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 448 REMARK 3 ORIGIN FOR THE GROUP (A): 62.5565 36.4777 417.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.0298 T22: 0.0375 REMARK 3 T33: 0.0297 T12: -0.0151 REMARK 3 T13: 0.0215 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.1032 L22: 0.2220 REMARK 3 L33: 0.2301 L12: -0.0374 REMARK 3 L13: 0.0225 L23: -0.0128 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: -0.0048 S13: -0.0073 REMARK 3 S21: 0.0584 S22: -0.0656 S23: 0.0071 REMARK 3 S31: 0.0511 S32: -0.0063 S33: 0.0698 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED THE PHOSPHO-HISTIDINE REMARK 3 RESIDUES WERE FOUND IN THE ELECTRON DENSITY MAPS AT POSITIONS 31 REMARK 3 AND 360 IN THE SEQUENCE AND LATER VERIFIED VIA ASSAY. REMARK 4 REMARK 4 4UHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25807 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 44.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : 0.27000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : 1.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4UHM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS AT 10 MG/ML AND WAS SET UP REMARK 280 IN 200 NL PLUS 200 NL DROPS AGAINST 2.5 M NACL, 20 MM ZINC REMARK 280 ACETATE, 0.1 M IMIDAZOLE BUFFER AT PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.45600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.84300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.12850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.45600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.84300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.12850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.45600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.84300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.12850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.45600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.84300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.12850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 125.82400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 119.68600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2058 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 4 REMARK 465 VAL A 5 REMARK 465 ASN A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 8 REMARK 465 PRO A 9 REMARK 465 SER A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3P HIP A 31 O HOH A 2186 1.41 REMARK 500 O2P HIP A 31 O HOH A 2008 1.41 REMARK 500 O1P HIP A 31 O HOH A 2187 1.68 REMARK 500 O2P HIP A 360 O HOH A 2188 1.88 REMARK 500 NZ LYS A 102 OD1 ASP A 343 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 24 57.69 35.26 REMARK 500 CYS A 63 55.79 -110.87 REMARK 500 GLN A 90 6.74 80.46 REMARK 500 LEU A 176 -109.85 -115.35 REMARK 500 ASP A 216 130.95 79.06 REMARK 500 VAL A 234 80.18 52.88 REMARK 500 ALA A 287 -146.23 -162.93 REMARK 500 LYS A 288 -92.65 44.24 REMARK 500 CYS A 380 118.13 -163.66 REMARK 500 LEU A 382 43.07 -93.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1455 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 104 O REMARK 620 2 THR A 107 OG1 86.1 REMARK 620 3 THR A 107 O 80.0 85.6 REMARK 620 4 PRO A 108 O 150.4 103.3 73.0 REMARK 620 5 LEU A 111 O 115.0 81.9 159.6 94.3 REMARK 620 6 HOH A2037 O 87.5 171.0 99.6 85.3 95.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1451 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 180 OD1 REMARK 620 2 ASP A 180 OD1 119.0 REMARK 620 3 HOH A2089 O 157.0 77.8 REMARK 620 4 HOH A2089 O 82.9 156.8 79.0 REMARK 620 5 HOH A2091 O 100.4 97.0 92.3 85.4 REMARK 620 6 HOH A2091 O 89.2 86.4 75.7 86.5 166.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 1453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 1454 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1455 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Di-peptide PHE A 30 and HIP A REMARK 800 31 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Di-peptide HIP A 31 and LYS A REMARK 800 32 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Di-peptide PRO A 359 and HIP A REMARK 800 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Di-peptide HIP A 360 and PHE A REMARK 800 361 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UHM RELATED DB: PDB REMARK 900 CHARACTERIZATION OF A NOVEL TRANSAMINASE FROM PSEUDOMONAS SP. REMARK 900 STRAIN AAC REMARK 900 RELATED ID: 4UHO RELATED DB: PDB REMARK 900 CHARACTERIZATION OF A NOVEL TRANSAMINASE FROM PSEUDOMONAS SP. REMARK 900 STRAIN AAC REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE HAS AN N-TERMINAL HIS-TAG AND THROMBIN SITE ADDED. REMARK 999 IN ADDITION, THERE ARE TWO PHOSPHORYLATED HISTIDINE REMARK 999 RESIDUES. DBREF1 4UHN A 1 448 UNP A0A081YAY5_9PSED DBREF2 4UHN A A0A081YAY5 1 448 SEQADV 4UHN MET A -19 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN GLY A -18 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN SER A -17 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN SER A -16 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN HIS A -15 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN HIS A -14 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN HIS A -13 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN HIS A -12 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN HIS A -11 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN HIS A -10 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN SER A -9 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN SER A -8 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN GLY A -7 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN LEU A -6 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN VAL A -5 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN PRO A -4 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN ARG A -3 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN GLY A -2 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN SER A -1 UNP A0A081YAY EXPRESSION TAG SEQADV 4UHN HIS A 0 UNP A0A081YAY EXPRESSION TAG SEQRES 1 A 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 468 LEU VAL PRO ARG GLY SER HIS MET ASN GLN GLN VAL ASN SEQRES 3 A 468 VAL ALA PRO SER ALA ALA ALA ASP LEU ASN LEU LYS ALA SEQRES 4 A 468 HIS TRP MET PRO PHE SER ALA ASN ARG ASN PHE HIP LYS SEQRES 5 A 468 ASP PRO ARG ILE ILE VAL ALA ALA GLU GLY SER TRP LEU SEQRES 6 A 468 VAL ASP ASP LYS GLY ARG ARG ILE TYR ASP SER LEU SER SEQRES 7 A 468 GLY LEU TRP THR CYS GLY ALA GLY HIS SER ARG LYS GLU SEQRES 8 A 468 ILE ALA ASP ALA VAL ALA LYS GLN ILE GLY THR LEU ASP SEQRES 9 A 468 TYR SER PRO GLY PHE GLN TYR GLY HIS PRO LEU SER PHE SEQRES 10 A 468 GLN LEU ALA GLU LYS ILE ALA GLN MET THR PRO GLY THR SEQRES 11 A 468 LEU ASP HIS VAL PHE PHE THR GLY SER GLY SER GLU CYS SEQRES 12 A 468 ALA ASP THR SER ILE LYS MET ALA ARG ALA TYR TRP ARG SEQRES 13 A 468 ILE LYS GLY GLN ALA GLN LYS THR LYS LEU ILE GLY ARG SEQRES 14 A 468 ALA ARG GLY TYR HIS GLY VAL ASN VAL ALA GLY THR SER SEQRES 15 A 468 LEU GLY GLY ILE GLY GLY ASN ARG LYS MET PHE GLY PRO SEQRES 16 A 468 LEU MET ASP VAL ASP HIS LEU PRO HIS THR LEU GLN PRO SEQRES 17 A 468 GLY MET ALA PHE THR LYS GLY ALA ALA GLU THR GLY GLY SEQRES 18 A 468 VAL GLU LEU ALA ASN GLU LEU LEU LYS LEU ILE GLU LEU SEQRES 19 A 468 HIS ASP ALA SER ASN ILE ALA ALA VAL ILE VAL GLU PRO SEQRES 20 A 468 MET SER GLY SER ALA GLY VAL ILE VAL PRO PRO LYS GLY SEQRES 21 A 468 TYR LEU GLN ARG LEU ARG GLU ILE CYS ASP ALA ASN ASP SEQRES 22 A 468 ILE LEU LEU ILE PHE ASP GLU VAL ILE THR ALA PHE GLY SEQRES 23 A 468 ARG MET GLY LYS ALA THR GLY ALA GLU TYR PHE GLY VAL SEQRES 24 A 468 THR PRO ASP ILE MET ASN VAL ALA LYS GLN VAL THR ASN SEQRES 25 A 468 GLY ALA VAL PRO MET GLY ALA VAL ILE ALA SER SER GLU SEQRES 26 A 468 ILE TYR ASP THR PHE MET ASN GLN ASN LEU PRO GLU TYR SEQRES 27 A 468 ALA VAL GLU PHE GLY HIS GLY TYR THR TYR SER ALA HIS SEQRES 28 A 468 PRO VAL ALA CYS ALA ALA GLY ILE ALA ALA LEU ASP LEU SEQRES 29 A 468 LEU GLN LYS GLU ASN LEU ILE GLN GLN SER ALA GLU LEU SEQRES 30 A 468 ALA PRO HIP PHE GLU LYS ALA LEU HIS GLY LEU LYS GLY SEQRES 31 A 468 THR LYS ASN VAL ILE ASP ILE ARG ASN CYS GLY LEU ALA SEQRES 32 A 468 GLY ALA ILE GLN ILE ALA ALA ARG ASP GLY ASP ALA ILE SEQRES 33 A 468 VAL ARG PRO PHE GLU ALA SER MET LYS LEU TRP LYS GLU SEQRES 34 A 468 GLY PHE TYR VAL ARG PHE GLY GLY ASP THR LEU GLN PHE SEQRES 35 A 468 GLY PRO THR PHE ASN ALA LYS PRO GLU ASP LEU ASP ARG SEQRES 36 A 468 LEU PHE ASP ALA VAL GLY GLU ALA LEU ASN GLY VAL ALA MODRES 4UHN HIP A 31 HIS ND1-PHOSPHONOHISTIDINE MODRES 4UHN HIP A 360 HIS ND1-PHOSPHONOHISTIDINE HET HIP A 31 14 HET HIP A 360 14 HET MG A1451 1 HET GOL A1452 6 HET ACY A1453 4 HET PLP A1454 16 HET NA A1455 1 HETNAM HIP ND1-PHOSPHONOHISTIDINE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM ACY ACETIC ACID HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 1 HIP 2(C6 H11 N3 O5 P 1+) FORMUL 2 MG MG 2+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 ACY C2 H4 O2 FORMUL 5 PLP C8 H10 N O6 P FORMUL 6 NA NA 1+ FORMUL 7 HOH *190(H2 O) HELIX 1 1 ASN A 16 HIS A 20 5 5 HELIX 2 2 ALA A 26 ASP A 33 1 8 HELIX 3 3 LEU A 57 THR A 62 1 6 HELIX 4 4 ARG A 69 LEU A 83 1 15 HELIX 5 5 HIS A 93 THR A 107 1 15 HELIX 6 6 SER A 119 LYS A 138 1 20 HELIX 7 7 ASN A 157 GLY A 164 1 8 HELIX 8 8 ILE A 166 LYS A 171 1 6 HELIX 9 9 GLY A 200 ASP A 216 1 17 HELIX 10 10 GLY A 240 ASP A 253 1 14 HELIX 11 11 THR A 272 GLY A 278 1 7 HELIX 12 12 ALA A 287 ASN A 292 5 6 HELIX 13 13 SER A 304 ASN A 312 1 9 HELIX 14 14 HIS A 331 GLU A 348 1 18 HELIX 15 15 ASN A 349 GLY A 367 1 19 HELIX 16 16 ILE A 396 GLU A 409 1 14 HELIX 17 17 LYS A 429 GLY A 446 1 18 SHEET 1 AA 4 ILE A 37 GLU A 41 0 SHEET 2 AA 4 TRP A 44 ASP A 47 -1 O TRP A 44 N GLU A 41 SHEET 3 AA 4 ARG A 52 ASP A 55 -1 O ILE A 53 N LEU A 45 SHEET 4 AA 4 PHE A 411 TYR A 412 1 N TYR A 412 O TYR A 54 SHEET 1 AB 7 LEU A 111 THR A 117 0 SHEET 2 AB 7 GLY A 298 SER A 303 -1 O GLY A 298 N THR A 117 SHEET 3 AB 7 ILE A 283 VAL A 286 -1 O MET A 284 N ILE A 301 SHEET 4 AB 7 LEU A 255 ASP A 259 1 O PHE A 258 N ASN A 285 SHEET 5 AB 7 ILE A 220 VAL A 225 1 O ALA A 221 N LEU A 255 SHEET 6 AB 7 LYS A 145 ARG A 149 1 O LYS A 145 N ALA A 221 SHEET 7 AB 7 ASP A 180 LEU A 182 1 O ASP A 180 N GLY A 148 SHEET 1 AC 4 VAL A 374 CYS A 380 0 SHEET 2 AC 4 ALA A 383 ILE A 388 -1 O ALA A 383 N CYS A 380 SHEET 3 AC 4 THR A 419 PHE A 422 -1 O LEU A 420 N ILE A 386 SHEET 4 AC 4 ARG A 414 GLY A 416 -1 O ARG A 414 N GLN A 421 LINK C PHE A 30 N HIP A 31 1555 1555 1.32 LINK C HIP A 31 N ALYS A 32 1555 1555 1.34 LINK C HIP A 31 N BLYS A 32 1555 1555 1.33 LINK C PRO A 359 N HIP A 360 1555 1555 1.33 LINK C HIP A 360 N PHE A 361 1555 1555 1.32 LINK O ALA A 104 NA NA A1455 1555 1555 2.29 LINK OG1 THR A 107 NA NA A1455 1555 1555 2.40 LINK O THR A 107 NA NA A1455 1555 1555 2.53 LINK O PRO A 108 NA NA A1455 1555 1555 3.03 LINK O LEU A 111 NA NA A1455 1555 1555 2.52 LINK OD1 ASP A 180 MG MG A1451 1555 1555 1.95 LINK OD1 ASP A 180 MG MG A1451 2765 1555 2.06 LINK MG MG A1451 O HOH A2089 1555 2765 2.44 LINK MG MG A1451 O HOH A2089 1555 1555 2.33 LINK MG MG A1451 O HOH A2091 1555 1555 2.14 LINK MG MG A1451 O HOH A2091 1555 2765 2.50 LINK NA NA A1455 O HOH A2037 1555 1555 2.29 SITE 1 AC1 3 ASP A 180 HOH A2089 HOH A2091 SITE 1 AC2 4 PHE A 24 ASN A 169 SER A 231 ARG A 414 SITE 1 AC3 1 VAL A 38 SITE 1 AC4 16 SER A 119 GLY A 120 SER A 121 TYR A 153 SITE 2 AC4 16 HIS A 154 GLY A 155 GLU A 226 ASP A 259 SITE 3 AC4 16 VAL A 261 ILE A 262 LYS A 288 HOH A2046 SITE 4 AC4 16 HOH A2070 HOH A2125 HOH A2149 HOH A2189 SITE 1 AC5 5 ALA A 104 THR A 107 PRO A 108 LEU A 111 SITE 2 AC5 5 HOH A2037 SITE 1 AC6 14 LYS A 18 MET A 22 ALA A 26 ASN A 27 SITE 2 AC6 14 ARG A 28 ASN A 29 LYS A 32 ASP A 33 SITE 3 AC6 14 PRO A 34 ARG A 35 HOH A2002 HOH A2008 SITE 4 AC6 14 HOH A2186 HOH A2187 SITE 1 AC7 12 LYS A 18 ASN A 27 ARG A 28 ASN A 29 SITE 2 AC7 12 PHE A 30 ASP A 33 PRO A 34 HOH A2002 SITE 3 AC7 12 HOH A2007 HOH A2008 HOH A2186 HOH A2187 SITE 1 AC8 11 ALA A 355 GLU A 356 LEU A 357 ALA A 358 SITE 2 AC8 11 PHE A 361 GLU A 362 LYS A 363 ALA A 364 SITE 3 AC8 11 PRO A 430 ASP A 434 HOH A2188 SITE 1 AC9 15 LEU A 357 ALA A 358 PRO A 359 GLU A 362 SITE 2 AC9 15 LYS A 363 ALA A 364 LEU A 365 GLY A 381 SITE 3 AC9 15 LEU A 382 ALA A 383 GLY A 384 PRO A 424 SITE 4 AC9 15 PRO A 430 ASP A 434 HOH A2188 CRYST1 62.912 119.686 134.257 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015895 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007448 0.00000