HEADER HYDROLASE 25-MAR-15 4UHQ TITLE CRYSTAL STRUCTURE OF THE PYOCIN AP41 DNASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LARGE COMPONENT OF PYOCIN AP41; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNASE DOMAIN, RESIDUES 642-777; COMPND 5 SYNONYM: PYOCIN AP41 LARGE COMPONENT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS HYDROLASE, BACTERIOCIN, DNASE, PYOCIN EXPDTA X-RAY DIFFRACTION AUTHOR A.JOSHI,S.CHEN,J.A.WOJDYLA,R.KAMINSKA,C.KLEANTHOUS REVDAT 3 10-JAN-24 4UHQ 1 REMARK LINK REVDAT 2 02-SEP-15 4UHQ 1 JRNL REVDAT 1 05-AUG-15 4UHQ 0 JRNL AUTH A.JOSHI,R.GRINTER,I.JOSTS,S.CHEN,J.A.WOJDYLA,E.D.LOWE, JRNL AUTH 2 R.KAMINSKA,C.SHARP,L.MCCAUGHEY,A.W.ROSZAK,R.J.COGDELL, JRNL AUTH 3 O.BYRON,D.WALKER,C.KLEANTHOUS JRNL TITL STRUCTURES OF THE ULTRA-HIGH AFFINITY PROTEIN-PROTEIN JRNL TITL 2 COMPLEXES OF PYOCINS S2 AND AP41 AND THEIR COGNATE IMMUNITY JRNL TITL 3 PROTEINS FROM PSEUDOMONAS AERUGINOSA JRNL REF J.MOL.BIOL. V. 427 2852 2015 JRNL REFN ISSN 0022-2836 JRNL PMID 26215615 JRNL DOI 10.1016/J.JMB.2015.07.014 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 59106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9987 - 4.1374 1.00 2916 144 0.1510 0.1728 REMARK 3 2 4.1374 - 3.2843 1.00 2749 162 0.1658 0.1795 REMARK 3 3 3.2843 - 2.8692 1.00 2721 133 0.1943 0.2178 REMARK 3 4 2.8692 - 2.6069 1.00 2739 114 0.1823 0.2152 REMARK 3 5 2.6069 - 2.4201 1.00 2687 133 0.1750 0.1698 REMARK 3 6 2.4201 - 2.2774 1.00 2670 160 0.1711 0.1922 REMARK 3 7 2.2774 - 2.1633 1.00 2664 146 0.1665 0.1622 REMARK 3 8 2.1633 - 2.0692 1.00 2696 130 0.1735 0.2085 REMARK 3 9 2.0692 - 1.9895 1.00 2627 144 0.1658 0.1967 REMARK 3 10 1.9895 - 1.9208 1.00 2643 173 0.1660 0.1776 REMARK 3 11 1.9208 - 1.8608 1.00 2624 163 0.1721 0.1808 REMARK 3 12 1.8608 - 1.8076 1.00 2664 140 0.1698 0.1953 REMARK 3 13 1.8076 - 1.7600 1.00 2636 145 0.1672 0.1873 REMARK 3 14 1.7600 - 1.7171 1.00 2652 125 0.1759 0.1797 REMARK 3 15 1.7171 - 1.6780 1.00 2652 136 0.1843 0.2137 REMARK 3 16 1.6780 - 1.6423 1.00 2638 145 0.1938 0.2207 REMARK 3 17 1.6423 - 1.6095 1.00 2649 133 0.2026 0.2281 REMARK 3 18 1.6095 - 1.5791 1.00 2632 135 0.2229 0.2686 REMARK 3 19 1.5791 - 1.5509 1.00 2640 122 0.2397 0.2452 REMARK 3 20 1.5509 - 1.5246 1.00 2596 155 0.2448 0.2671 REMARK 3 21 1.5246 - 1.5000 0.99 2651 122 0.2764 0.3080 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2211 REMARK 3 ANGLE : 1.462 3006 REMARK 3 CHIRALITY : 0.065 306 REMARK 3 PLANARITY : 0.009 404 REMARK 3 DIHEDRAL : 17.414 830 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 643 THROUGH 652 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5228 2.7889 -20.6433 REMARK 3 T TENSOR REMARK 3 T11: 0.2999 T22: 0.3096 REMARK 3 T33: 0.2729 T12: -0.0743 REMARK 3 T13: 0.0176 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 3.0863 L22: 6.0403 REMARK 3 L33: 2.1285 L12: -4.2463 REMARK 3 L13: 1.6223 L23: -2.0260 REMARK 3 S TENSOR REMARK 3 S11: -0.1180 S12: 0.8767 S13: -0.2043 REMARK 3 S21: -0.1807 S22: -0.2119 S23: 0.2074 REMARK 3 S31: 0.4148 S32: 0.4299 S33: 0.4468 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 653 THROUGH 671 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2578 9.7273 -10.0069 REMARK 3 T TENSOR REMARK 3 T11: 0.2010 T22: 0.2697 REMARK 3 T33: 0.2038 T12: 0.0768 REMARK 3 T13: -0.0195 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 3.5229 L22: 6.6868 REMARK 3 L33: 5.9987 L12: 1.6346 REMARK 3 L13: -0.6731 L23: -0.2651 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: -0.4322 S13: -0.0954 REMARK 3 S21: 0.3886 S22: 0.1155 S23: -0.3295 REMARK 3 S31: 0.3424 S32: 0.6716 S33: -0.0501 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 672 THROUGH 685 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9218 3.9492 -14.9475 REMARK 3 T TENSOR REMARK 3 T11: 0.2106 T22: 0.2221 REMARK 3 T33: 0.2757 T12: -0.0673 REMARK 3 T13: 0.0486 T23: -0.0653 REMARK 3 L TENSOR REMARK 3 L11: 4.0363 L22: 7.6572 REMARK 3 L33: 6.5079 L12: -1.0728 REMARK 3 L13: 0.8156 L23: -1.7832 REMARK 3 S TENSOR REMARK 3 S11: -0.1558 S12: -0.0537 S13: -0.4189 REMARK 3 S21: -0.1262 S22: 0.0749 S23: 0.5936 REMARK 3 S31: 0.7202 S32: -0.7745 S33: 0.0733 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 686 THROUGH 699 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2095 12.5841 -13.7618 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.2022 REMARK 3 T33: 0.2696 T12: 0.0023 REMARK 3 T13: 0.0062 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 6.3496 L22: 4.1559 REMARK 3 L33: 8.5526 L12: 0.5170 REMARK 3 L13: 2.0839 L23: -0.3823 REMARK 3 S TENSOR REMARK 3 S11: -0.1081 S12: 0.2680 S13: 0.0152 REMARK 3 S21: -0.0708 S22: -0.0445 S23: 0.3945 REMARK 3 S31: -0.2977 S32: -0.5154 S33: 0.0595 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 700 THROUGH 735 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2046 20.0880 -7.4411 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.1379 REMARK 3 T33: 0.1856 T12: 0.0011 REMARK 3 T13: 0.0160 T23: -0.0471 REMARK 3 L TENSOR REMARK 3 L11: 3.5020 L22: 3.1346 REMARK 3 L33: 4.2261 L12: 0.8719 REMARK 3 L13: -1.4338 L23: 0.9881 REMARK 3 S TENSOR REMARK 3 S11: 0.1425 S12: -0.1182 S13: 0.0549 REMARK 3 S21: -0.0848 S22: 0.0103 S23: -0.1847 REMARK 3 S31: -0.2084 S32: 0.1878 S33: -0.1187 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 736 THROUGH 759 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4508 9.7844 -22.7777 REMARK 3 T TENSOR REMARK 3 T11: 0.2274 T22: 0.1854 REMARK 3 T33: 0.2029 T12: -0.0015 REMARK 3 T13: 0.0124 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 2.5586 L22: 1.9588 REMARK 3 L33: 3.6589 L12: 0.4948 REMARK 3 L13: 0.6599 L23: 1.8853 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: 0.1365 S13: -0.0570 REMARK 3 S21: -0.1220 S22: 0.0501 S23: -0.0146 REMARK 3 S31: -0.0001 S32: 0.0021 S33: -0.0582 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 760 THROUGH 774 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.7887 17.4927 -25.2014 REMARK 3 T TENSOR REMARK 3 T11: 0.2015 T22: 0.2800 REMARK 3 T33: 0.2369 T12: -0.0346 REMARK 3 T13: 0.0458 T23: -0.0532 REMARK 3 L TENSOR REMARK 3 L11: 4.4226 L22: 4.4953 REMARK 3 L33: 3.3169 L12: -1.2856 REMARK 3 L13: -1.9970 L23: 3.4024 REMARK 3 S TENSOR REMARK 3 S11: 0.1604 S12: 0.5433 S13: 0.0406 REMARK 3 S21: -0.3125 S22: 0.2283 S23: -0.3107 REMARK 3 S31: -0.0970 S32: 0.3054 S33: -0.4213 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 642 THROUGH 663 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6813 50.0278 -10.3375 REMARK 3 T TENSOR REMARK 3 T11: 0.3378 T22: 0.2565 REMARK 3 T33: 0.2747 T12: 0.0793 REMARK 3 T13: -0.0204 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 5.4771 L22: 3.9548 REMARK 3 L33: 2.7654 L12: 1.1677 REMARK 3 L13: -0.6156 L23: -2.6760 REMARK 3 S TENSOR REMARK 3 S11: -0.1654 S12: -0.1850 S13: 0.2462 REMARK 3 S21: 0.5048 S22: 0.0607 S23: -0.1212 REMARK 3 S31: -0.3995 S32: -0.0003 S33: 0.1307 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 664 THROUGH 685 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4679 51.5384 -11.1486 REMARK 3 T TENSOR REMARK 3 T11: 0.2860 T22: 0.1362 REMARK 3 T33: 0.2548 T12: 0.0256 REMARK 3 T13: -0.0840 T23: 0.0457 REMARK 3 L TENSOR REMARK 3 L11: 3.4824 L22: 5.9401 REMARK 3 L33: 5.4987 L12: -0.2379 REMARK 3 L13: 1.0083 L23: 0.1529 REMARK 3 S TENSOR REMARK 3 S11: -0.1834 S12: -0.4864 S13: 0.6967 REMARK 3 S21: 0.3607 S22: 0.0529 S23: -0.4197 REMARK 3 S31: -0.6381 S32: 0.4806 S33: 0.1051 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 686 THROUGH 699 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1900 44.3661 -12.0254 REMARK 3 T TENSOR REMARK 3 T11: 0.2321 T22: 0.1875 REMARK 3 T33: 0.3443 T12: 0.0185 REMARK 3 T13: -0.0363 T23: 0.0880 REMARK 3 L TENSOR REMARK 3 L11: 4.9520 L22: 5.0217 REMARK 3 L33: 8.7592 L12: 0.5761 REMARK 3 L13: -0.7639 L23: -1.1906 REMARK 3 S TENSOR REMARK 3 S11: -0.0769 S12: 0.2484 S13: 0.2744 REMARK 3 S21: 0.0457 S22: -0.1667 S23: -0.6698 REMARK 3 S31: 0.2597 S32: 0.3334 S33: 0.1991 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 700 THROUGH 759 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5590 41.0000 -10.5995 REMARK 3 T TENSOR REMARK 3 T11: 0.1945 T22: 0.1672 REMARK 3 T33: 0.1968 T12: 0.0257 REMARK 3 T13: 0.0142 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.2693 L22: 3.1869 REMARK 3 L33: 2.9880 L12: -0.4866 REMARK 3 L13: 0.6394 L23: -2.6094 REMARK 3 S TENSOR REMARK 3 S11: -0.0524 S12: -0.0078 S13: 0.0498 REMARK 3 S21: -0.0089 S22: 0.0572 S23: 0.0391 REMARK 3 S31: -0.0907 S32: -0.0736 S33: 0.0095 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 760 THROUGH 774 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7088 41.9149 -19.5496 REMARK 3 T TENSOR REMARK 3 T11: 0.3383 T22: 0.3834 REMARK 3 T33: 0.4601 T12: -0.0517 REMARK 3 T13: -0.1556 T23: 0.1658 REMARK 3 L TENSOR REMARK 3 L11: 5.5286 L22: 2.3838 REMARK 3 L33: 7.7750 L12: -3.5923 REMARK 3 L13: 4.2189 L23: -2.3887 REMARK 3 S TENSOR REMARK 3 S11: -0.1023 S12: 0.1446 S13: -0.0456 REMARK 3 S21: -0.7535 S22: 0.4582 S23: 1.0127 REMARK 3 S31: 0.1676 S32: -0.8332 S33: -0.4252 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE METAL WAS IDENTIFIED BY XRAY REMARK 3 FLUORESCENCE OF THE CRYSTALLINE SAMPLE. REMARK 4 REMARK 4 4UHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59171 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1BX1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRISODIUM CITRATE, 20% 2 REMARK 280 -PROPANOL, 20% PEG4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.76600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.28750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.28750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.88300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.28750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.28750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.64900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.28750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.28750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.88300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.28750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.28750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.64900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.76600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2041 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2083 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 642 REMARK 465 GLU A 776 REMARK 465 LYS A 777 REMARK 465 GLU B 776 REMARK 465 LYS B 777 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 775 CG CD CE NZ REMARK 470 LYS B 775 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO7 CIT B 1776 NI NI B 1777 1.22 REMARK 500 HO7 CIT A 1776 NI NI A 1778 1.29 REMARK 500 O4 CIT A 1777 O HOH A 2039 1.78 REMARK 500 O HOH B 2005 O HOH B 2026 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 643 77.19 -115.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1778 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 738 ND1 REMARK 620 2 HIS A 763 NE2 89.5 REMARK 620 3 HIS A 767 NE2 97.9 95.4 REMARK 620 4 CIT A1776 O6 103.0 96.1 156.2 REMARK 620 5 CIT A1776 O7 170.3 100.0 83.4 74.1 REMARK 620 6 HOH A2057 O 84.3 173.3 87.7 83.1 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B1777 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 738 ND1 REMARK 620 2 HIS B 763 NE2 90.1 REMARK 620 3 HIS B 767 NE2 97.5 95.1 REMARK 620 4 CIT B1776 O7 171.1 98.4 84.4 REMARK 620 5 CIT B1776 O6 101.4 97.1 157.4 75.0 REMARK 620 6 HOH B2034 O 84.8 174.5 87.7 86.6 81.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 1776 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1776 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1777 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 1777 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1778 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UHP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PYOCIN AP41 DNASE-IMMUNITY COMPLEX DBREF 4UHQ A 642 777 UNP Q51502 Q51502_PSEAI 642 777 DBREF 4UHQ B 642 777 UNP Q51502 Q51502_PSEAI 642 777 SEQRES 1 A 136 ASP GLU PRO GLY VAL ALA THR GLY ASN GLY GLN PRO VAL SEQRES 2 A 136 THR GLY ASN TRP LEU ALA GLY ALA SER GLN GLY ASP GLY SEQRES 3 A 136 VAL PRO ILE PRO SER GLN ILE ALA ASP GLN LEU ARG GLY SEQRES 4 A 136 LYS GLU PHE LYS SER TRP ARG ASP PHE ARG GLU GLN PHE SEQRES 5 A 136 TRP MET ALA VAL SER LYS ASP PRO SER ALA LEU GLU ASN SEQRES 6 A 136 LEU SER PRO SER ASN ARG TYR PHE VAL SER GLN GLY LEU SEQRES 7 A 136 ALA PRO TYR ALA VAL PRO GLU GLU HIS LEU GLY SER LYS SEQRES 8 A 136 GLU LYS PHE GLU ILE HIS HIS VAL VAL PRO LEU GLU SER SEQRES 9 A 136 GLY GLY ALA LEU TYR ASN ILE ASP ASN LEU VAL ILE VAL SEQRES 10 A 136 THR PRO LYS ARG HIS SER GLU ILE HIS LYS GLU LEU LYS SEQRES 11 A 136 LEU LYS ARG LYS GLU LYS SEQRES 1 B 136 ASP GLU PRO GLY VAL ALA THR GLY ASN GLY GLN PRO VAL SEQRES 2 B 136 THR GLY ASN TRP LEU ALA GLY ALA SER GLN GLY ASP GLY SEQRES 3 B 136 VAL PRO ILE PRO SER GLN ILE ALA ASP GLN LEU ARG GLY SEQRES 4 B 136 LYS GLU PHE LYS SER TRP ARG ASP PHE ARG GLU GLN PHE SEQRES 5 B 136 TRP MET ALA VAL SER LYS ASP PRO SER ALA LEU GLU ASN SEQRES 6 B 136 LEU SER PRO SER ASN ARG TYR PHE VAL SER GLN GLY LEU SEQRES 7 B 136 ALA PRO TYR ALA VAL PRO GLU GLU HIS LEU GLY SER LYS SEQRES 8 B 136 GLU LYS PHE GLU ILE HIS HIS VAL VAL PRO LEU GLU SER SEQRES 9 B 136 GLY GLY ALA LEU TYR ASN ILE ASP ASN LEU VAL ILE VAL SEQRES 10 B 136 THR PRO LYS ARG HIS SER GLU ILE HIS LYS GLU LEU LYS SEQRES 11 B 136 LEU LYS ARG LYS GLU LYS HET CIT A1776 18 HET CIT A1777 36 HET NI A1778 1 HET CIT B1776 18 HET NI B1777 1 HETNAM CIT CITRIC ACID HETNAM NI NICKEL (II) ION FORMUL 3 CIT 3(C6 H8 O7) FORMUL 5 NI 2(NI 2+) FORMUL 8 HOH *135(H2 O) HELIX 1 1 LEU A 659 GLN A 664 5 6 HELIX 2 2 PRO A 671 ARG A 679 1 9 HELIX 3 3 SER A 685 LYS A 699 1 15 HELIX 4 4 ASP A 700 GLU A 705 1 6 HELIX 5 5 SER A 708 GLN A 717 1 10 HELIX 6 6 VAL A 724 HIS A 728 5 5 HELIX 7 7 PRO A 742 GLY A 746 5 5 HELIX 8 8 THR A 759 ARG A 774 1 16 HELIX 9 9 ASN B 657 GLN B 664 5 8 HELIX 10 10 PRO B 671 ASP B 676 1 6 HELIX 11 11 SER B 685 LYS B 699 1 15 HELIX 12 12 ASP B 700 GLU B 705 1 6 HELIX 13 13 SER B 708 GLN B 717 1 10 HELIX 14 14 VAL B 724 HIS B 728 5 5 HELIX 15 15 PRO B 742 GLY B 746 5 5 HELIX 16 16 THR B 759 ARG B 774 1 16 SHEET 1 AA 2 GLY A 645 VAL A 646 0 SHEET 2 AA 2 GLU A 682 PHE A 683 -1 O PHE A 683 N GLY A 645 SHEET 1 AB 3 VAL A 668 PRO A 669 0 SHEET 2 AB 3 LEU A 755 VAL A 758 -1 O ILE A 757 N VAL A 668 SHEET 3 AB 3 GLU A 736 HIS A 739 -1 O GLU A 736 N VAL A 758 SHEET 1 BA 2 GLY B 645 VAL B 646 0 SHEET 2 BA 2 GLU B 682 PHE B 683 -1 O PHE B 683 N GLY B 645 SHEET 1 BB 3 VAL B 668 PRO B 669 0 SHEET 2 BB 3 LEU B 755 VAL B 758 -1 O ILE B 757 N VAL B 668 SHEET 3 BB 3 GLU B 736 HIS B 739 -1 O GLU B 736 N VAL B 758 LINK ND1 HIS A 738 NI NI A1778 1555 1555 2.09 LINK NE2 HIS A 763 NI NI A1778 1555 1555 2.08 LINK NE2 HIS A 767 NI NI A1778 1555 1555 2.12 LINK O6 CIT A1776 NI NI A1778 1555 1555 2.08 LINK O7 CIT A1776 NI NI A1778 1555 1555 2.25 LINK NI NI A1778 O HOH A2057 1555 1555 2.16 LINK ND1 HIS B 738 NI NI B1777 1555 1555 2.13 LINK NE2 HIS B 763 NI NI B1777 1555 1555 2.05 LINK NE2 HIS B 767 NI NI B1777 1555 1555 2.15 LINK O7 CIT B1776 NI NI B1777 1555 1555 2.18 LINK O6 CIT B1776 NI NI B1777 1555 1555 2.12 LINK NI NI B1777 O HOH B2034 1555 1555 2.12 SITE 1 AC1 11 HIS B 738 HIS B 739 PRO B 742 LEU B 743 SITE 2 AC1 11 GLU B 744 HIS B 763 HIS B 767 NI B1777 SITE 3 AC1 11 HOH B2034 HOH B2048 HOH B2049 SITE 1 AC2 10 HIS A 738 HIS A 739 PRO A 742 LEU A 743 SITE 2 AC2 10 GLU A 744 HIS A 763 HIS A 767 NI A1778 SITE 3 AC2 10 HOH A2057 HOH A2081 SITE 1 AC3 17 PRO A 709 SER A 710 PHE A 714 TYR A 722 SITE 2 AC3 17 HOH A2039 HOH A2044 HOH A2045 HOH A2048 SITE 3 AC3 17 HOH A2083 HOH A2084 HOH A2085 HOH A2086 SITE 4 AC3 17 PRO B 709 SER B 710 PHE B 714 TYR B 722 SITE 5 AC3 17 HOH B2019 SITE 1 AC4 5 HIS B 738 HIS B 763 HIS B 767 CIT B1776 SITE 2 AC4 5 HOH B2034 SITE 1 AC5 5 HIS A 738 HIS A 763 HIS A 767 CIT A1776 SITE 2 AC5 5 HOH A2057 CRYST1 100.575 100.575 71.532 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009943 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013980 0.00000