HEADER HYDROLASE 25-MAR-15 4UHU TITLE W229D MUTANT OF THE LAST COMMON ANCESTOR OF GRAM-NEGATIVE BACTERIA TITLE 2 (GNCA) BETA-LACTAMASE CLASS A COMPND MOL_ID: 1; COMPND 2 MOLECULE: GNCA LACTAMASE W229D; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS HYDROLASE, PRECAMBRIAN, RESURRECTED BETA-LACTAMASE, GNCA EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GAVIRA,V.A.RISSO,S.MARTINEZ-RODRIGUEZ,J.M.SANCHEZ-RUIZ REVDAT 4 10-JAN-24 4UHU 1 REMARK ATOM REVDAT 3 02-AUG-17 4UHU 1 REVDAT 2 26-JUL-17 4UHU 1 REVDAT 1 13-APR-16 4UHU 0 JRNL AUTH V.A.RISSO,S.MARTINEZ-RODRIGUEZ,A.M.CANDEL,D.M.KRUGER, JRNL AUTH 2 D.PANTOJA-UCEDA,M.ORTEGA-MUNOZ,F.SANTOYO-GONZALEZ, JRNL AUTH 3 E.A.GAUCHER,S.C.L.KAMERLIN,M.BRUIX,J.A.GAVIRA, JRNL AUTH 4 J.M.SANCHEZ-RUIZ JRNL TITL DE NOVO ACTIVE SITES FOR RESURRECTED PRECAMBRIAN ENZYMES. JRNL REF NAT COMMUN V. 8 16113 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28719578 JRNL DOI 10.1038/NCOMMS16113 REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 60130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6376 - 3.6530 0.98 2789 128 0.1558 0.1427 REMARK 3 2 3.6530 - 2.9006 0.99 2664 161 0.1509 0.1747 REMARK 3 3 2.9006 - 2.5343 0.99 2650 142 0.1631 0.2067 REMARK 3 4 2.5343 - 2.3027 1.00 2672 138 0.1590 0.1958 REMARK 3 5 2.3027 - 2.1378 0.97 2567 154 0.1471 0.1512 REMARK 3 6 2.1378 - 2.0118 1.00 2610 154 0.1385 0.1650 REMARK 3 7 2.0118 - 1.9110 1.00 2626 139 0.1483 0.1575 REMARK 3 8 1.9110 - 1.8279 1.00 2641 135 0.1534 0.1836 REMARK 3 9 1.8279 - 1.7575 1.00 2610 131 0.1514 0.1773 REMARK 3 10 1.7575 - 1.6969 0.99 2607 141 0.1536 0.2014 REMARK 3 11 1.6969 - 1.6438 1.00 2625 134 0.1517 0.1688 REMARK 3 12 1.6438 - 1.5969 0.97 2529 129 0.1519 0.1646 REMARK 3 13 1.5969 - 1.5548 0.99 2567 163 0.1471 0.1732 REMARK 3 14 1.5548 - 1.5169 0.99 2557 140 0.1534 0.1871 REMARK 3 15 1.5169 - 1.4824 0.99 2590 116 0.1600 0.1675 REMARK 3 16 1.4824 - 1.4509 0.99 2572 141 0.1839 0.1905 REMARK 3 17 1.4509 - 1.4218 0.99 2590 139 0.2131 0.2386 REMARK 3 18 1.4218 - 1.3950 0.99 2541 134 0.2317 0.2522 REMARK 3 19 1.3950 - 1.3701 0.98 2542 129 0.2520 0.2849 REMARK 3 20 1.3701 - 1.3469 0.99 2598 129 0.2621 0.2644 REMARK 3 21 1.3469 - 1.3252 0.97 2494 139 0.2717 0.2698 REMARK 3 22 1.3252 - 1.3048 0.94 2446 127 0.3029 0.3290 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2199 REMARK 3 ANGLE : 1.128 3008 REMARK 3 CHIRALITY : 0.041 345 REMARK 3 PLANARITY : 0.005 407 REMARK 3 DIHEDRAL : 12.052 837 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3145 101.8293 28.1427 REMARK 3 T TENSOR REMARK 3 T11: 0.1350 T22: 0.1022 REMARK 3 T33: 0.1160 T12: -0.0262 REMARK 3 T13: 0.0069 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.9405 L22: 1.0390 REMARK 3 L33: 0.7539 L12: 0.0159 REMARK 3 L13: -0.1425 L23: 0.2931 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.0715 S13: -0.1887 REMARK 3 S21: 0.2515 S22: -0.0203 S23: 0.0701 REMARK 3 S31: 0.1484 S32: -0.0827 S33: 0.0103 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1334 124.5135 7.4198 REMARK 3 T TENSOR REMARK 3 T11: 0.0907 T22: 0.1167 REMARK 3 T33: 0.1039 T12: -0.0018 REMARK 3 T13: -0.0109 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.6502 L22: 0.9035 REMARK 3 L33: 0.9462 L12: 0.1986 REMARK 3 L13: 0.0559 L23: -0.0328 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: 0.0661 S13: 0.0656 REMARK 3 S21: -0.0701 S22: 0.0047 S23: -0.0142 REMARK 3 S31: -0.1063 S32: 0.0339 S33: 0.0496 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2043 130.3854 15.3524 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: 0.1478 REMARK 3 T33: 0.1746 T12: -0.0322 REMARK 3 T13: -0.0537 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 2.2203 L22: 1.5937 REMARK 3 L33: 4.0867 L12: -0.2241 REMARK 3 L13: -0.2888 L23: -0.2100 REMARK 3 S TENSOR REMARK 3 S11: -0.0913 S12: -0.1153 S13: 0.2088 REMARK 3 S21: 0.1705 S22: 0.0154 S23: -0.2840 REMARK 3 S31: -0.1679 S32: 0.3465 S33: 0.0717 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8491 120.7480 17.9229 REMARK 3 T TENSOR REMARK 3 T11: 0.0772 T22: 0.0884 REMARK 3 T33: 0.0938 T12: 0.0091 REMARK 3 T13: -0.0121 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.7166 L22: 0.8276 REMARK 3 L33: 0.7647 L12: -0.0214 REMARK 3 L13: 0.0124 L23: -0.3283 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: -0.0618 S13: -0.0129 REMARK 3 S21: 0.0433 S22: -0.0107 S23: 0.0269 REMARK 3 S31: -0.0633 S32: -0.0312 S33: 0.0307 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0739 107.7948 16.3899 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.0756 REMARK 3 T33: 0.1005 T12: 0.0025 REMARK 3 T13: -0.0016 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.8341 L22: 1.1538 REMARK 3 L33: 1.1733 L12: -0.2298 REMARK 3 L13: -0.1592 L23: -0.1858 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: 0.0132 S13: -0.0743 REMARK 3 S21: 0.0267 S22: -0.0452 S23: -0.0972 REMARK 3 S31: 0.0730 S32: 0.1007 S33: 0.0609 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 272 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2512 97.3607 25.6085 REMARK 3 T TENSOR REMARK 3 T11: 0.1820 T22: 0.1036 REMARK 3 T33: 0.1393 T12: 0.0161 REMARK 3 T13: -0.0389 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.3855 L22: 5.0706 REMARK 3 L33: 3.6628 L12: 1.3464 REMARK 3 L13: 1.3438 L23: 2.7848 REMARK 3 S TENSOR REMARK 3 S11: 0.1162 S12: 0.0264 S13: -0.2553 REMARK 3 S21: -0.0011 S22: -0.0943 S23: -0.0850 REMARK 3 S31: 0.2615 S32: -0.0277 S33: -0.0187 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UHU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97779 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : DECTRIS HPADS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60121 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 26.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.84000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4B88 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COUNTERDIFFUSION METHOD: 5.0 M REMARK 280 NAFORMATE, 0.1 M NAAC PH 4.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.06900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.28400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.06900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.28400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2146 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 26 REMARK 465 ALA A 27 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2052 O HOH A 2053 2.12 REMARK 500 O GLY A 143 O HOH A 2130 2.14 REMARK 500 O HOH A 2141 O HOH A 2142 2.18 REMARK 500 O HOH A 2108 O HOH A 2232 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2010 O HOH A 2159 3546 2.09 REMARK 500 OD2 ASP A 63 O HOH A 2035 2595 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -141.29 46.16 REMARK 500 TYR A 105 80.87 52.18 REMARK 500 TYR A 105 72.46 58.47 REMARK 500 ARG A 220 -125.87 -107.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2059 DISTANCE = 6.52 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1299 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UFQ RELATED DB: PDB REMARK 900 STRUCTURE OF A NOVEL HYALURONIDASE (HYAL_SK) FROM STREPTOMYCES REMARK 900 KOGANEIENSIS. REMARK 999 REMARK 999 SEQUENCE REMARK 999 IT IS AN ANCESTRAL RECONSTRUCTED. THERE IS A MUTATION AT REMARK 999 POSITION 229. DBREF 4UHU A 26 296 PDB 4UHU 4UHU 26 296 SEQRES 1 A 268 ALA ALA GLN LEU SER GLU GLN LEU ALA GLU LEU GLU LYS SEQRES 2 A 268 ARG SER GLY GLY ARG LEU GLY VAL ALA VAL LEU ASP THR SEQRES 3 A 268 ALA THR GLY ARG ARG ILE ALA TYR ARG GLY ASP GLU ARG SEQRES 4 A 268 PHE PRO MET CYS SER THR PHE LYS ALA LEU LEU ALA ALA SEQRES 5 A 268 ALA VAL LEU ALA ARG VAL ASP GLN GLY LYS GLU ARG LEU SEQRES 6 A 268 ASP ARG ARG ILE THR TYR GLY LYS GLU ASP LEU VAL ASP SEQRES 7 A 268 TYR SER PRO VAL THR GLU LYS HIS VAL GLY ASP GLY MET SEQRES 8 A 268 THR VAL ALA GLU LEU CYS GLU ALA ALA ILE THR LEU SER SEQRES 9 A 268 ASP ASN THR ALA ALA ASN LEU LEU LEU GLU ALA LEU GLY SEQRES 10 A 268 GLY PRO ALA ALA LEU THR ALA PHE LEU ARG SER ILE GLY SEQRES 11 A 268 ASP GLU VAL THR ARG LEU ASP ARG TRP GLU PRO GLU LEU SEQRES 12 A 268 ASN GLU ALA ALA PRO GLY ASP PRO ARG ASP THR THR THR SEQRES 13 A 268 PRO ALA ALA MET ALA ALA THR LEU ARG THR LEU LEU LEU SEQRES 14 A 268 GLY ASP ALA LEU SER PRO ALA SER ARG GLN GLN LEU VAL SEQRES 15 A 268 ASP TRP LEU VAL ALA ASN LYS THR GLY ASP LYS ARG LEU SEQRES 16 A 268 ARG ALA GLY LEU PRO ALA ASP ASP ARG VAL GLY ASP LYS SEQRES 17 A 268 THR GLY THR GLY GLY HIS GLY THR THR ASN ASP ILE ALA SEQRES 18 A 268 VAL ILE TRP PRO PRO GLY ARG ALA PRO ILE VAL VAL THR SEQRES 19 A 268 VAL TYR LEU THR GLU SER GLN VAL ASP ALA ASP ALA ARG SEQRES 20 A 268 ASP ALA VAL ILE ALA GLU VAL GLY ARG LEU VAL VAL GLU SEQRES 21 A 268 ALA PHE HIS HIS HIS HIS HIS HIS HET FMT A1295 3 HET FMT A1296 3 HET FMT A1297 3 HET ACT A1298 4 HET ACT A1299 4 HETNAM FMT FORMIC ACID HETNAM ACT ACETATE ION FORMUL 2 FMT 3(C H2 O2) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 HOH *265(H2 O) HELIX 1 1 GLN A 28 GLY A 41 1 14 HELIX 2 2 THR A 71 GLN A 86 1 16 HELIX 3 3 GLY A 98 LEU A 102 5 5 HELIX 4 4 VAL A 108 HIS A 112 5 5 HELIX 5 5 VAL A 119 LEU A 129 1 11 HELIX 6 6 ASP A 131 GLY A 143 1 13 HELIX 7 7 GLY A 144 ILE A 155 1 12 HELIX 8 8 PRO A 167 GLU A 171 5 5 HELIX 9 9 THR A 182 LEU A 195 1 14 HELIX 10 10 SER A 200 ALA A 213 1 14 HELIX 11 11 ARG A 220 LEU A 225 5 6 HELIX 12 12 ASP A 271 HIS A 292 1 22 SHEET 1 AA 5 ARG A 56 TYR A 60 0 SHEET 2 AA 5 ARG A 43 ASP A 50 -1 O VAL A 46 N TYR A 60 SHEET 3 AA 5 ILE A 259 THR A 266 -1 O VAL A 260 N LEU A 49 SHEET 4 AA 5 THR A 243 TRP A 251 -1 O THR A 244 N LEU A 265 SHEET 5 AA 5 ARG A 230 GLY A 238 -1 O ARG A 230 N TRP A 251 SHEET 1 AB 2 PHE A 66 PRO A 67 0 SHEET 2 AB 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AC 2 ARG A 94 ILE A 95 0 SHEET 2 AC 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 CISPEP 1 GLU A 166 PRO A 167 0 -0.17 SITE 1 AC1 6 HIS A 241 GLY A 242 SER A 268 ARG A 284 SITE 2 AC1 6 HOH A2232 HOH A2241 SITE 1 AC2 4 THR A 96 ALA A 202 GLY A 255 HOH A2265 SITE 1 AC3 4 ASP A 229 HIS A 291 HOH A2225 HOH A2262 SITE 1 AC4 8 ASN A 136 TRP A 165 GLU A 166 HIS A 291 SITE 2 AC4 8 HIS A 292 HIS A 293 HOH A2153 HOH A2264 SITE 1 AC5 6 SER A 130 ARG A 220 LYS A 234 THR A 235 SITE 2 AC5 6 GLY A 236 THR A 237 CRYST1 70.138 50.568 69.719 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014258 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014343 0.00000