HEADER TRANSFERASE 30-MAR-15 4UII TITLE CRYSTAL STRUCTURE OF THE AZOTOBACTER VINELANDII GLOBIN-COUPLED OXYGEN TITLE 2 SENSOR IN THE AQUO-MET FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GGDEF DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GLOBIN DOMAIN, RESIDUES 1-170; COMPND 5 SYNONYM: GLOBIN-COUPLED SENSOR WITH DIGUANYLATE CYCLASE ACTIVITY; COMPND 6 EC: 2.7.7.65; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOTOBACTER VINELANDII; SOURCE 3 ORGANISM_TAXID: 354; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS TRANSFERASE, GLOBIN-COUPLED SENSOR, HEME-BASED SENSOR, OXYGEN KEYWDS 2 AFFINITY, DIGUANYLATE CYCLASE, C-DI-GMP, MODERATE ENZYME EFFICIENCY, KEYWDS 3 SENSOR CRYSTAL STRUCTURE EXPDTA X-RAY DIFFRACTION AUTHOR F.GERMANI,A.DE SCHUTTER,A.PESCE,H.BERGHMANS,M.-L.VAN HAUWAERT, AUTHOR 2 B.CUYPERS,S.BRUNO,A.MOZZARELLI,L.MOENS,S.VAN DOORSLAER,M.BOLOGNESI, AUTHOR 3 M.NARDINI,S.DEWILDE REVDAT 2 10-JAN-24 4UII 1 REMARK LINK REVDAT 1 13-APR-16 4UII 0 JRNL AUTH F.GERMANI,A.DE SCHUTTER,A.PESCE,H.BERGHMANS, JRNL AUTH 2 M.-L.VAN HAUWAERT,B.CUYPERS,S.BRUNO,A.MOZZARELLI,L.MOENS, JRNL AUTH 3 S.VAN DOORSLAER,M.BOLOGNESI,M.NARDINI,S.DEWILDE JRNL TITL AZOTOBACTER VINELANDII GLOBIN-COUPLED OXYGEN SENSOR IS A JRNL TITL 2 DIGUANYLATE CYCLASE WITH A BIPHASIC OXYGEN DISSOCIATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 6825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.4623 - 3.5609 0.95 3279 155 0.2398 0.2690 REMARK 3 2 3.5609 - 2.8270 0.96 3233 158 0.3000 0.3924 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 88.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2251 REMARK 3 ANGLE : 1.971 3069 REMARK 3 CHIRALITY : 0.126 326 REMARK 3 PLANARITY : 0.009 386 REMARK 3 DIHEDRAL : 20.782 838 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063497. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97906 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : BENDABLE FOCUSSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6845 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.830 REMARK 200 RESOLUTION RANGE LOW (A) : 30.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.05000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4UIQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33% PEG 6000, 10 MM NA-CITRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.74500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -46 REMARK 465 GLY A -45 REMARK 465 GLY A -44 REMARK 465 SER A -43 REMARK 465 HIS A -42 REMARK 465 HIS A -41 REMARK 465 HIS A -40 REMARK 465 HIS A -39 REMARK 465 HIS A -38 REMARK 465 HIS A -37 REMARK 465 GLY A -36 REMARK 465 MET A -35 REMARK 465 ALA A -34 REMARK 465 SER A -33 REMARK 465 MET A -32 REMARK 465 THR A -31 REMARK 465 GLY A -30 REMARK 465 GLY A -29 REMARK 465 GLN A -28 REMARK 465 GLN A -27 REMARK 465 MET A -26 REMARK 465 GLY A -25 REMARK 465 ARG A -24 REMARK 465 ASP A -23 REMARK 465 LEU A -22 REMARK 465 TYR A -21 REMARK 465 ASP A -20 REMARK 465 ASP A -19 REMARK 465 ASP A -18 REMARK 465 ASP A -17 REMARK 465 LYS A -16 REMARK 465 ASP A -15 REMARK 465 ARG A -14 REMARK 465 TRP A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 GLU A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 MET A -7 REMARK 465 SER A -6 REMARK 465 ASN A -5 REMARK 465 ARG A -4 REMARK 465 ALA A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLY A 3 REMARK 465 ILE A 4 REMARK 465 SER A 5 REMARK 465 LEU A 48 REMARK 465 GLN A 49 REMARK 465 ASP A 50 REMARK 465 GLU A 51 REMARK 465 GLN A 52 REMARK 465 ALA A 53 REMARK 465 MET A 54 REMARK 465 LEU A 55 REMARK 465 PHE A 56 REMARK 465 LEU A 57 REMARK 465 THR A 58 REMARK 465 HIS A 59 REMARK 465 GLU A 60 REMARK 465 GLN A 61 REMARK 465 VAL A 62 REMARK 465 LYS A 63 REMARK 465 SER A 64 REMARK 465 ARG A 65 REMARK 465 LEU A 66 REMARK 465 HIS A 67 REMARK 465 PHE A 158 REMARK 465 SER A 159 REMARK 465 ASP A 160 REMARK 465 ALA A 161 REMARK 465 TYR A 162 REMARK 465 ASP A 163 REMARK 465 ARG A 164 REMARK 465 ASN A 165 REMARK 465 SER A 166 REMARK 465 ARG A 167 REMARK 465 SER A 168 REMARK 465 GLU A 169 REMARK 465 GLU A 170 REMARK 465 MET B -46 REMARK 465 GLY B -45 REMARK 465 GLY B -44 REMARK 465 SER B -43 REMARK 465 HIS B -42 REMARK 465 HIS B -41 REMARK 465 HIS B -40 REMARK 465 HIS B -39 REMARK 465 HIS B -38 REMARK 465 HIS B -37 REMARK 465 GLY B -36 REMARK 465 MET B -35 REMARK 465 ALA B -34 REMARK 465 SER B -33 REMARK 465 MET B -32 REMARK 465 THR B -31 REMARK 465 GLY B -30 REMARK 465 GLY B -29 REMARK 465 GLN B -28 REMARK 465 GLN B -27 REMARK 465 MET B -26 REMARK 465 GLY B -25 REMARK 465 ARG B -24 REMARK 465 ASP B -23 REMARK 465 LEU B -22 REMARK 465 TYR B -21 REMARK 465 ASP B -20 REMARK 465 ASP B -19 REMARK 465 ASP B -18 REMARK 465 ASP B -17 REMARK 465 LYS B -16 REMARK 465 ASP B -15 REMARK 465 ARG B -14 REMARK 465 TRP B -13 REMARK 465 GLY B -12 REMARK 465 SER B -11 REMARK 465 GLU B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 MET B -7 REMARK 465 SER B -6 REMARK 465 ASN B -5 REMARK 465 ARG B -4 REMARK 465 ALA B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLY B 3 REMARK 465 ILE B 4 REMARK 465 SER B 5 REMARK 465 PRO B 6 REMARK 465 GLN B 46 REMARK 465 MET B 47 REMARK 465 LEU B 48 REMARK 465 GLN B 49 REMARK 465 ASP B 50 REMARK 465 GLU B 51 REMARK 465 GLN B 52 REMARK 465 ALA B 53 REMARK 465 MET B 54 REMARK 465 LEU B 55 REMARK 465 PHE B 56 REMARK 465 LEU B 57 REMARK 465 THR B 58 REMARK 465 HIS B 59 REMARK 465 GLU B 60 REMARK 465 GLN B 61 REMARK 465 VAL B 62 REMARK 465 LYS B 63 REMARK 465 SER B 64 REMARK 465 ARG B 65 REMARK 465 LEU B 66 REMARK 465 HIS B 67 REMARK 465 GLY B 68 REMARK 465 THR B 69 REMARK 465 ALA B 157 REMARK 465 PHE B 158 REMARK 465 SER B 159 REMARK 465 ASP B 160 REMARK 465 ALA B 161 REMARK 465 TYR B 162 REMARK 465 ASP B 163 REMARK 465 ARG B 164 REMARK 465 ASN B 165 REMARK 465 SER B 166 REMARK 465 ARG B 167 REMARK 465 SER B 168 REMARK 465 GLU B 169 REMARK 465 GLU B 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 152 NH1 ARG B 116 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 45 CB - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 GLU A 45 N - CA - C ANGL. DEV. = 33.7 DEGREES REMARK 500 SER A 79 N - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 SER A 81 CB - CA - C ANGL. DEV. = -22.2 DEGREES REMARK 500 ALA A 92 CB - CA - C ANGL. DEV. = -9.8 DEGREES REMARK 500 PRO B 23 CB - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 HIS B 35 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 TYR B 42 CB - CA - C ANGL. DEV. = -20.5 DEGREES REMARK 500 SER B 79 CB - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 SER B 79 N - CA - C ANGL. DEV. = -36.8 DEGREES REMARK 500 MET B 80 N - CA - CB ANGL. DEV. = -20.1 DEGREES REMARK 500 ASP B 84 CB - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 ASP B 84 O - C - N ANGL. DEV. = -11.0 DEGREES REMARK 500 ALA B 85 C - N - CA ANGL. DEV. = 17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 19 22.25 -79.47 REMARK 500 GLU A 38 -25.04 -142.86 REMARK 500 PRO A 40 75.88 -66.01 REMARK 500 PHE A 43 22.49 -155.68 REMARK 500 LYS A 105 68.35 67.10 REMARK 500 GLN A 128 38.38 -88.51 REMARK 500 ARG A 156 -20.33 -144.66 REMARK 500 GLN B 9 1.33 -63.63 REMARK 500 GLN B 19 33.47 -94.66 REMARK 500 HIS B 35 23.86 49.68 REMARK 500 PRO B 40 107.21 -51.71 REMARK 500 PHE B 43 60.97 -161.27 REMARK 500 SER B 81 -151.73 -124.44 REMARK 500 GLN B 128 49.25 -79.00 REMARK 500 PRO B 130 54.02 -94.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR B 42 PHE B 43 -147.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP B 84 -18.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2002 DISTANCE = 6.27 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 101 NE2 REMARK 620 2 HEM A 200 NA 88.6 REMARK 620 3 HEM A 200 NB 84.4 91.4 REMARK 620 4 HEM A 200 NC 76.4 164.5 90.6 REMARK 620 5 HEM A 200 ND 82.4 86.8 166.7 87.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 101 NE2 REMARK 620 2 HEM B 200 NA 89.9 REMARK 620 3 HEM B 200 NB 72.8 92.4 REMARK 620 4 HEM B 200 NC 75.7 165.0 87.2 REMARK 620 5 HEM B 200 ND 93.3 86.3 166.0 90.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UIQ RELATED DB: PDB REMARK 900 ISOLATED GLOBIN DOMAIN OF THE BORDETELLA PERTUSSIS GLOBIN-COUPLED REMARK 900 SENSOR WITH A HEME AT THE DIMER INTERFACE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE GLOBIN DOMAIN CORRESPONDS TO RESIDUES 1-170 OF THE REMARK 999 WHOLE MOLECULE. HIS TAG AND RESIDUES FROM THE PLASMID ARE REMARK 999 ALSO PRESENT AT THE N-TERMINAL. DBREF 4UII A 1 170 UNP M9YE33 M9YE33_AZOVI 1 170 DBREF 4UII B 1 170 UNP M9YE33 M9YE33_AZOVI 1 170 SEQADV 4UII MET A -46 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY A -45 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY A -44 UNP M9YE33 EXPRESSION TAG SEQADV 4UII SER A -43 UNP M9YE33 EXPRESSION TAG SEQADV 4UII HIS A -42 UNP M9YE33 EXPRESSION TAG SEQADV 4UII HIS A -41 UNP M9YE33 EXPRESSION TAG SEQADV 4UII HIS A -40 UNP M9YE33 EXPRESSION TAG SEQADV 4UII HIS A -39 UNP M9YE33 EXPRESSION TAG SEQADV 4UII HIS A -38 UNP M9YE33 EXPRESSION TAG SEQADV 4UII HIS A -37 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY A -36 UNP M9YE33 EXPRESSION TAG SEQADV 4UII MET A -35 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ALA A -34 UNP M9YE33 EXPRESSION TAG SEQADV 4UII SER A -33 UNP M9YE33 EXPRESSION TAG SEQADV 4UII MET A -32 UNP M9YE33 EXPRESSION TAG SEQADV 4UII THR A -31 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY A -30 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY A -29 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLN A -28 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLN A -27 UNP M9YE33 EXPRESSION TAG SEQADV 4UII MET A -26 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY A -25 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ARG A -24 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ASP A -23 UNP M9YE33 EXPRESSION TAG SEQADV 4UII LEU A -22 UNP M9YE33 EXPRESSION TAG SEQADV 4UII TYR A -21 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ASP A -20 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ASP A -19 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ASP A -18 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ASP A -17 UNP M9YE33 EXPRESSION TAG SEQADV 4UII LYS A -16 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ASP A -15 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ARG A -14 UNP M9YE33 EXPRESSION TAG SEQADV 4UII TRP A -13 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY A -12 UNP M9YE33 EXPRESSION TAG SEQADV 4UII SER A -11 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLU A -10 UNP M9YE33 EXPRESSION TAG SEQADV 4UII LEU A -9 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLU A -8 UNP M9YE33 EXPRESSION TAG SEQADV 4UII MET A -7 UNP M9YE33 EXPRESSION TAG SEQADV 4UII SER A -6 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ASN A -5 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ARG A -4 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ALA A -3 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY A -2 UNP M9YE33 EXPRESSION TAG SEQADV 4UII SER A -1 UNP M9YE33 EXPRESSION TAG SEQADV 4UII SER A 0 UNP M9YE33 EXPRESSION TAG SEQADV 4UII MET B -46 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY B -45 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY B -44 UNP M9YE33 EXPRESSION TAG SEQADV 4UII SER B -43 UNP M9YE33 EXPRESSION TAG SEQADV 4UII HIS B -42 UNP M9YE33 EXPRESSION TAG SEQADV 4UII HIS B -41 UNP M9YE33 EXPRESSION TAG SEQADV 4UII HIS B -40 UNP M9YE33 EXPRESSION TAG SEQADV 4UII HIS B -39 UNP M9YE33 EXPRESSION TAG SEQADV 4UII HIS B -38 UNP M9YE33 EXPRESSION TAG SEQADV 4UII HIS B -37 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY B -36 UNP M9YE33 EXPRESSION TAG SEQADV 4UII MET B -35 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ALA B -34 UNP M9YE33 EXPRESSION TAG SEQADV 4UII SER B -33 UNP M9YE33 EXPRESSION TAG SEQADV 4UII MET B -32 UNP M9YE33 EXPRESSION TAG SEQADV 4UII THR B -31 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY B -30 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY B -29 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLN B -28 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLN B -27 UNP M9YE33 EXPRESSION TAG SEQADV 4UII MET B -26 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY B -25 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ARG B -24 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ASP B -23 UNP M9YE33 EXPRESSION TAG SEQADV 4UII LEU B -22 UNP M9YE33 EXPRESSION TAG SEQADV 4UII TYR B -21 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ASP B -20 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ASP B -19 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ASP B -18 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ASP B -17 UNP M9YE33 EXPRESSION TAG SEQADV 4UII LYS B -16 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ASP B -15 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ARG B -14 UNP M9YE33 EXPRESSION TAG SEQADV 4UII TRP B -13 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY B -12 UNP M9YE33 EXPRESSION TAG SEQADV 4UII SER B -11 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLU B -10 UNP M9YE33 EXPRESSION TAG SEQADV 4UII LEU B -9 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLU B -8 UNP M9YE33 EXPRESSION TAG SEQADV 4UII MET B -7 UNP M9YE33 EXPRESSION TAG SEQADV 4UII SER B -6 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ASN B -5 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ARG B -4 UNP M9YE33 EXPRESSION TAG SEQADV 4UII ALA B -3 UNP M9YE33 EXPRESSION TAG SEQADV 4UII GLY B -2 UNP M9YE33 EXPRESSION TAG SEQADV 4UII SER B -1 UNP M9YE33 EXPRESSION TAG SEQADV 4UII SER B 0 UNP M9YE33 EXPRESSION TAG SEQRES 1 A 217 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 217 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR SEQRES 3 A 217 ASP ASP ASP ASP LYS ASP ARG TRP GLY SER GLU LEU GLU SEQRES 4 A 217 MET SER ASN ARG ALA GLY SER SER MET PRO GLY ILE SER SEQRES 5 A 217 PRO GLU GLN GLN ALA ALA GLU TRP LYS LEU LEU LEU GLY SEQRES 6 A 217 GLN PHE PRO ALA PRO VAL VAL ALA GLN ILE ARG GLU LEU SEQRES 7 A 217 ALA THR THR HIS GLN SER GLU LEU PRO GLY TYR PHE TYR SEQRES 8 A 217 GLU GLN MET LEU GLN ASP GLU GLN ALA MET LEU PHE LEU SEQRES 9 A 217 THR HIS GLU GLN VAL LYS SER ARG LEU HIS GLY THR LEU SEQRES 10 A 217 ARG GLN TRP ILE VAL SER VAL PHE SER MET SER ASP ASP SEQRES 11 A 217 ASP ALA ALA LEU GLN ALA LEU ILE ALA GLN GLN LYS GLN SEQRES 12 A 217 ILE GLY GLU ILE HIS ALA ARG ILE LYS ILE PRO ILE HIS SEQRES 13 A 217 LEU VAL LEU ARG GLY ALA ARG HIS LEU ARG GLU ARG LEU SEQRES 14 A 217 PHE VAL LEU LEU ARG GLN ARG PRO LEU ASP PRO GLU HIS SEQRES 15 A 217 LYS LEU PHE GLY GLN ARG LEU ILE SER GLU THR VAL ASP SEQRES 16 A 217 LEU ALA MET GLU ILE MET SER ARG ALA PHE SER ASP ALA SEQRES 17 A 217 TYR ASP ARG ASN SER ARG SER GLU GLU SEQRES 1 B 217 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 B 217 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR SEQRES 3 B 217 ASP ASP ASP ASP LYS ASP ARG TRP GLY SER GLU LEU GLU SEQRES 4 B 217 MET SER ASN ARG ALA GLY SER SER MET PRO GLY ILE SER SEQRES 5 B 217 PRO GLU GLN GLN ALA ALA GLU TRP LYS LEU LEU LEU GLY SEQRES 6 B 217 GLN PHE PRO ALA PRO VAL VAL ALA GLN ILE ARG GLU LEU SEQRES 7 B 217 ALA THR THR HIS GLN SER GLU LEU PRO GLY TYR PHE TYR SEQRES 8 B 217 GLU GLN MET LEU GLN ASP GLU GLN ALA MET LEU PHE LEU SEQRES 9 B 217 THR HIS GLU GLN VAL LYS SER ARG LEU HIS GLY THR LEU SEQRES 10 B 217 ARG GLN TRP ILE VAL SER VAL PHE SER MET SER ASP ASP SEQRES 11 B 217 ASP ALA ALA LEU GLN ALA LEU ILE ALA GLN GLN LYS GLN SEQRES 12 B 217 ILE GLY GLU ILE HIS ALA ARG ILE LYS ILE PRO ILE HIS SEQRES 13 B 217 LEU VAL LEU ARG GLY ALA ARG HIS LEU ARG GLU ARG LEU SEQRES 14 B 217 PHE VAL LEU LEU ARG GLN ARG PRO LEU ASP PRO GLU HIS SEQRES 15 B 217 LYS LEU PHE GLY GLN ARG LEU ILE SER GLU THR VAL ASP SEQRES 16 B 217 LEU ALA MET GLU ILE MET SER ARG ALA PHE SER ASP ALA SEQRES 17 B 217 TYR ASP ARG ASN SER ARG SER GLU GLU HET HEM A 200 43 HET HEM B 200 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *4(H2 O) HELIX 1 1 GLU A 7 LEU A 17 1 11 HELIX 2 2 GLY A 18 PHE A 20 5 3 HELIX 3 3 PRO A 21 HIS A 35 1 15 HELIX 4 4 GLY A 68 PHE A 78 1 11 HELIX 5 5 ASP A 83 ILE A 104 1 22 HELIX 6 6 PRO A 107 GLN A 128 1 22 HELIX 7 7 ASP A 132 SER A 155 1 24 HELIX 8 8 GLN B 8 GLY B 18 1 11 HELIX 9 9 PRO B 21 THR B 34 1 14 HELIX 10 10 LEU B 70 SER B 79 1 10 HELIX 11 11 LEU B 87 ILE B 104 1 18 HELIX 12 12 PRO B 107 GLN B 128 1 22 HELIX 13 13 ASP B 132 SER B 155 1 24 LINK NE2 HIS A 101 FE HEM A 200 1555 1555 2.39 LINK NE2 HIS B 101 FE HEM B 200 1555 1555 2.50 SITE 1 AC1 9 TRP A 73 ILE A 97 HIS A 101 ILE A 104 SITE 2 AC1 9 ILE A 106 LEU A 110 VAL A 111 MET A 151 SITE 3 AC1 9 HOH A2002 SITE 1 AC2 7 TRP B 73 ILE B 97 ILE B 100 HIS B 101 SITE 2 AC2 7 LEU B 110 VAL B 111 ALA B 115 CRYST1 47.890 49.490 62.770 90.00 91.81 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020881 0.000000 0.000660 0.00000 SCALE2 0.000000 0.020206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015939 0.00000