HEADER IMMUNE SYSTEM 30-MAR-15 4UIL TITLE CRYSTAL STRUCTURE OF QUININE-DEPENDENT FAB 314.1 WITH QUININE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB 314.1; COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: FAB, HEAVY CHAIN, RESIDUES 1-222; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB 314.1; COMPND 7 CHAIN: L; COMPND 8 FRAGMENT: FAB, LIGHT CHAIN, RESIDUES 1-213 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 OTHER_DETAILS: ASCITES FLUID; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 OTHER_DETAILS: ASCITES FLUID KEYWDS IMMUNE SYSTEM, FAB, QUININE-DEPENDENT, MOUSE MAB EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHU,J.ZHU,D.W.BOUGIE,R.H.ASTER,T.A.SPRINGER REVDAT 3 10-JAN-24 4UIL 1 REMARK REVDAT 2 11-NOV-15 4UIL 1 JRNL REVDAT 1 02-SEP-15 4UIL 0 JRNL AUTH J.ZHU,J.ZHU,D.W.BOUGIE,R.H.ASTER,T.A.SPRINGER JRNL TITL STRUCTURAL BASIS FOR QUININE-DEPENDENT ANTIBODY BINDING TO JRNL TITL 2 PLATELET INTEGRIN ALPHAIIB BETA3 JRNL REF BLOOD V. 126 2138 2015 JRNL REFN ISSN 0006-4971 JRNL PMID 26282540 JRNL DOI 10.1182/BLOOD-2015-04-639351 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 10478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.400 REMARK 3 FREE R VALUE TEST SET COUNT : 990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5860 - 5.4551 0.99 1614 169 0.2411 0.3099 REMARK 3 2 5.4551 - 4.3307 1.00 1498 157 0.2208 0.2734 REMARK 3 3 4.3307 - 3.7835 0.90 1331 136 0.2713 0.3702 REMARK 3 4 3.7835 - 3.4377 0.76 926 93 0.3212 0.3681 REMARK 3 5 3.4377 - 3.1914 0.97 1346 141 0.3421 0.4265 REMARK 3 6 3.1914 - 3.0032 0.98 1408 147 0.3674 0.4374 REMARK 3 7 3.0032 - 2.8529 0.97 1365 147 0.4133 0.4577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.40 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3409 REMARK 3 ANGLE : 0.744 4642 REMARK 3 CHIRALITY : 0.030 529 REMARK 3 PLANARITY : 0.006 582 REMARK 3 DIHEDRAL : 15.205 1204 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN H AND RESSEQ 1:121 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1170 11.3264 -33.7313 REMARK 3 T TENSOR REMARK 3 T11: 1.0127 T22: 1.1097 REMARK 3 T33: 0.3277 T12: -0.0022 REMARK 3 T13: 0.0238 T23: -0.1047 REMARK 3 L TENSOR REMARK 3 L11: 2.6904 L22: 4.4997 REMARK 3 L33: 3.7901 L12: -0.5395 REMARK 3 L13: 0.0429 L23: 1.2951 REMARK 3 S TENSOR REMARK 3 S11: 0.4475 S12: -0.0646 S13: -0.0382 REMARK 3 S21: -0.5593 S22: -0.2212 S23: -0.2698 REMARK 3 S31: 0.0103 S32: 0.9109 S33: -0.2996 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN H AND RESSEQ 122:222 REMARK 3 ORIGIN FOR THE GROUP (A): -2.6931 18.5245 1.7445 REMARK 3 T TENSOR REMARK 3 T11: 1.1006 T22: 1.7633 REMARK 3 T33: 0.4274 T12: -0.4612 REMARK 3 T13: 0.0989 T23: -0.2644 REMARK 3 L TENSOR REMARK 3 L11: 1.5329 L22: 2.4472 REMARK 3 L33: 3.4520 L12: -0.1357 REMARK 3 L13: -1.4781 L23: -0.5714 REMARK 3 S TENSOR REMARK 3 S11: -0.0601 S12: -0.6361 S13: -0.1261 REMARK 3 S21: 0.6238 S22: 0.2398 S23: -0.3225 REMARK 3 S31: -0.3740 S32: 0.8846 S33: -0.0156 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN L AND RESSEQ 1:108 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0793 -3.7305 -28.0982 REMARK 3 T TENSOR REMARK 3 T11: 0.9712 T22: 0.6938 REMARK 3 T33: 0.4942 T12: -0.1293 REMARK 3 T13: 0.0046 T23: -0.2041 REMARK 3 L TENSOR REMARK 3 L11: 4.7752 L22: 3.0476 REMARK 3 L33: 8.0637 L12: -0.2301 REMARK 3 L13: -0.0966 L23: 1.9033 REMARK 3 S TENSOR REMARK 3 S11: 0.8226 S12: -0.5539 S13: -0.9334 REMARK 3 S21: 1.5771 S22: -0.7937 S23: 0.6693 REMARK 3 S31: 1.5189 S32: -0.0813 S33: 0.0633 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN L AND RESSEQ 109:212 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1025 19.8296 -0.0301 REMARK 3 T TENSOR REMARK 3 T11: 0.9786 T22: 1.4764 REMARK 3 T33: -0.0044 T12: -0.5386 REMARK 3 T13: 0.2550 T23: -0.3826 REMARK 3 L TENSOR REMARK 3 L11: 1.3134 L22: 2.0160 REMARK 3 L33: 5.9578 L12: -0.5777 REMARK 3 L13: -0.2644 L23: 0.9027 REMARK 3 S TENSOR REMARK 3 S11: -0.0829 S12: -0.3338 S13: 0.4761 REMARK 3 S21: 0.2351 S22: -0.5365 S23: 0.2241 REMARK 3 S31: -0.4910 S32: -0.3066 S33: -0.4294 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN L REMARK 3 ORIGIN FOR THE GROUP (A): -3.0998 2.6905 -44.1949 REMARK 3 T TENSOR REMARK 3 T11: 1.4629 T22: 1.5738 REMARK 3 T33: 0.5267 T12: -0.0786 REMARK 3 T13: -0.0212 T23: 0.0764 REMARK 3 L TENSOR REMARK 3 L11: 2.5904 L22: 3.5947 REMARK 3 L33: 6.4755 L12: 0.3464 REMARK 3 L13: 2.5708 L23: 3.7088 REMARK 3 S TENSOR REMARK 3 S11: 0.4674 S12: -0.8153 S13: -0.5470 REMARK 3 S21: 0.7972 S22: 0.2189 S23: 0.4167 REMARK 3 S31: 0.2675 S32: -0.8830 S33: -0.6825 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SI CRYSTAL REMARK 200 OPTICS : DOUBLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10563 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.85000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4UIK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 150 MM AMMONIUM SULFATE, REMARK 280 AND 100 MM HEPES PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.35950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.15500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.17975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.15500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.15500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 174.53925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.15500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.15500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.17975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.15500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.15500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 174.53925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 116.35950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L2010 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA H 136A REMARK 465 ALA H 136B REMARK 465 GLN H 137 REMARK 465 ASN H 141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP L 184 O HOH L 2009 2.16 REMARK 500 OG SER H 17 O LEU H 83 2.19 REMARK 500 OH TYR H 95 O GLY L 42 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 21 141.19 -174.08 REMARK 500 SER H 31 44.52 -107.49 REMARK 500 LEU H 102 -84.69 -57.95 REMARK 500 SER H 106 -161.16 -165.91 REMARK 500 PRO H 135 -103.45 -85.95 REMARK 500 SER H 143 -72.38 58.05 REMARK 500 LEU H 147 -156.71 -118.42 REMARK 500 SER H 169 34.56 -168.17 REMARK 500 SER H 195 -73.79 -66.62 REMARK 500 THR H 196 -54.07 -19.69 REMARK 500 PRO H 221 -165.34 -72.10 REMARK 500 THR L 8 -157.46 -152.45 REMARK 500 SER L 9 -30.31 -152.23 REMARK 500 ASP L 17 98.15 -60.22 REMARK 500 GLN L 27 -166.20 -165.19 REMARK 500 TYR L 32 61.16 -103.22 REMARK 500 LEU L 47 -51.77 -122.42 REMARK 500 THR L 51 -46.39 68.22 REMARK 500 SER L 52 30.96 -155.73 REMARK 500 SER L 63 -148.55 -164.58 REMARK 500 SER L 67 115.49 -173.06 REMARK 500 ASN L 77 116.26 -162.56 REMARK 500 ALA L 84 -179.11 -172.87 REMARK 500 ASN L 138 81.14 58.43 REMARK 500 TYR L 140 -150.22 -109.97 REMARK 500 PRO L 141 113.12 -20.36 REMARK 500 LYS L 142 -30.06 -37.57 REMARK 500 ASP L 143 83.68 -61.91 REMARK 500 ASP L 151 28.65 49.04 REMARK 500 ASN L 157 99.11 -66.12 REMARK 500 GLU L 187 44.88 -89.07 REMARK 500 ARG L 188 -7.86 -150.50 REMARK 500 THR L 200 106.62 -57.42 REMARK 500 SER L 201 135.78 69.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR L 140 PRO L 141 -134.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QI9 H 1223 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UIK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF QUININE-DEPENDENT FAB 314.1 REMARK 900 RELATED ID: 4UIM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF QUININE-DEPENDENT FAB 314.3 REMARK 900 RELATED ID: 4UIN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF QUININE-DEPENDENT FAB 314.3 WITH QUININE DBREF 4UIL H 1 222 PDB 4UIL 4UIL 1 222 DBREF 4UIL L 1 213 PDB 4UIL 4UIL 1 213 SEQRES 1 H 222 ALA VAL GLN LEU GLN GLU SER GLY THR VAL LEU ALA ARG SEQRES 2 H 222 PRO GLY ALA SER VAL LYS MET SER CYS LYS ALA SER GLY SEQRES 3 H 222 TYR THR PHE THR SER TYR TRP MET HIS TRP VAL LYS GLN SEQRES 4 H 222 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY ALA ILE TYR SEQRES 5 H 222 PRO GLY ASN SER ASP THR SER TYR ASN GLN LYS PHE LYS SEQRES 6 H 222 GLY LYS ALA LYS LEU THR ALA VAL THR SER THR SER THR SEQRES 7 H 222 ALA TYR MET GLU LEU SER SER LEU THR ASN GLU ASP SER SEQRES 8 H 222 ALA VAL TYR TYR CYS THR ARG GLU ARG GLY LEU TYR TYR SEQRES 9 H 222 GLY SER SER SER PHE ASP TYR TRP GLY GLN GLY THR THR SEQRES 10 H 222 LEU THR VAL SER SER ALA GLU THR THR PRO PRO SER VAL SEQRES 11 H 222 TYR PRO LEU ALA PRO GLY ALA ALA GLN THR ASN SER SER SEQRES 12 H 222 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 H 222 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 H 222 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP SEQRES 15 H 222 LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SER SEQRES 16 H 222 THR TRP PRO SER GLN THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 H 222 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 18 H 222 ARG SEQRES 1 L 213 ASP ILE VAL MET THR GLN THR THR SER SER LEU SER ALA SEQRES 2 L 213 SER LEU GLY ASP ARG VAL THR ILE SER CYS ARG ALA SER SEQRES 3 L 213 GLN ASP ILE SER ASN TYR LEU SER TRP TYR GLN GLN LYS SEQRES 4 L 213 PRO ASP GLY THR VAL LYS VAL LEU ILE TYR TYR THR SER SEQRES 5 L 213 LYS LEU HIS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 213 GLY SER GLY THR ASP TYR SER LEU THR ILE SER ASN LEU SEQRES 7 L 213 GLU GLN GLU ASP ILE ALA THR TYR PHE CYS GLN GLN GLY SEQRES 8 L 213 ASN THR LEU PRO PRO THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 213 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 213 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 213 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 213 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 213 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 213 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 213 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 213 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 213 PHE ASN ARG ASN GLU HET QI9 H1223 49 HETNAM QI9 QUININE HETSYN QI9 (3ALPHA,8ALPHA,9R)-6'-METHOXYCINCHONAN-9-OL FORMUL 3 QI9 C20 H24 N2 O2 FORMUL 4 HOH *32(H2 O) HELIX 1 1 THR H 28 TYR H 32 5 5 HELIX 2 2 THR H 87 SER H 91 5 5 HELIX 3 3 SER H 195 GLN H 200 1 6 HELIX 4 4 GLU L 79 ILE L 83 5 5 HELIX 5 5 SER L 121 THR L 126 1 6 HELIX 6 6 LYS L 183 GLU L 187 1 5 SHEET 1 HA 4 GLN H 3 GLU H 6 0 SHEET 2 HA 4 CYS H 22 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 HA 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 HA 4 ALA H 68 VAL H 73 -1 O LYS H 69 N GLU H 82 SHEET 1 HB 4 GLN H 3 GLU H 6 0 SHEET 2 HB 4 CYS H 22 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 HB 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 HB 4 VAL H 18 LYS H 19 1 O VAL H 18 N LEU H 83 SHEET 1 HC 2 ALA H 68 VAL H 73 0 SHEET 2 HC 2 THR H 78 LEU H 83 -1 O THR H 78 N VAL H 73 SHEET 1 HD 4 VAL H 10 ALA H 12 0 SHEET 2 HD 4 THR H 116 VAL H 120 -1 O THR H 117 N VAL H 10 SHEET 3 HD 4 ALA H 92 GLU H 99 -1 O ALA H 92 N LEU H 118 SHEET 4 HD 4 PHE H 109 TRP H 112 -1 N ASP H 110 O ARG H 98 SHEET 1 HE 6 VAL H 10 ALA H 12 0 SHEET 2 HE 6 THR H 116 VAL H 120 -1 O THR H 117 N VAL H 10 SHEET 3 HE 6 ALA H 92 GLU H 99 -1 O ALA H 92 N LEU H 118 SHEET 4 HE 6 MET H 34 GLN H 39 -1 O HIS H 35 N THR H 97 SHEET 5 HE 6 LEU H 45 ILE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 HE 6 THR H 58 TYR H 60 -1 O SER H 59 N ALA H 50 SHEET 1 HF 2 PHE H 109 TRP H 112 0 SHEET 2 HF 2 ALA H 92 GLU H 99 -1 O ARG H 98 N ASP H 110 SHEET 1 HG 4 TYR H 131 LEU H 133 0 SHEET 2 HG 4 MET H 144 LEU H 150 -1 O GLY H 148 N LEU H 133 SHEET 3 HG 4 SER H 187 PRO H 193 -1 O SER H 188 N CYS H 149 SHEET 4 HG 4 HIS H 173 THR H 174 -1 O HIS H 173 N SER H 189 SHEET 1 HH 3 THR H 160 THR H 162 0 SHEET 2 HH 3 THR H 203 HIS H 208 -1 O ASN H 205 N THR H 162 SHEET 3 HH 3 THR H 213 LYS H 218 -1 O THR H 213 N HIS H 208 SHEET 1 HI 2 VAL H 178 LEU H 179 0 SHEET 2 HI 2 TYR H 184 THR H 185 -1 O THR H 185 N VAL H 178 SHEET 1 LA 3 THR L 5 GLN L 6 0 SHEET 2 LA 3 VAL L 19 ARG L 24 -1 O ARG L 24 N THR L 5 SHEET 3 LA 3 ASP L 70 ILE L 75 -1 O TYR L 71 N CYS L 23 SHEET 1 LB 5 LYS L 53 LEU L 54 0 SHEET 2 LB 5 VAL L 44 TYR L 49 -1 O TYR L 49 N LYS L 53 SHEET 3 LB 5 LEU L 33 GLN L 38 -1 O TRP L 35 N LEU L 47 SHEET 4 LB 5 THR L 85 GLN L 90 -1 O THR L 85 N GLN L 38 SHEET 5 LB 5 THR L 102 LYS L 103 -1 O THR L 102 N TYR L 86 SHEET 1 LC 4 THR L 114 PHE L 118 0 SHEET 2 LC 4 GLY L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 LC 4 TYR L 173 THR L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 LC 4 VAL L 159 TRP L 163 -1 O LEU L 160 N THR L 178 SHEET 1 LD 4 GLU L 154 ARG L 155 0 SHEET 2 LD 4 ASN L 145 LYS L 149 -1 O TRP L 148 N ARG L 155 SHEET 3 LD 4 SER L 191 THR L 197 -1 O GLU L 195 N LYS L 147 SHEET 4 LD 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 2 CYS H 149 CYS H 204 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 CISPEP 1 PHE H 155 PRO H 156 0 -5.23 CISPEP 2 GLU H 157 PRO H 158 0 -1.16 CISPEP 3 TRP H 197 PRO H 198 0 3.05 CISPEP 4 LEU L 94 PRO L 95 0 -4.50 SITE 1 AC1 13 TRP H 33 HIS H 35 SER H 59 GLU H 99 SITE 2 AC1 13 TYR H 104 SER H 106 PHE H 109 GLN L 90 SITE 3 AC1 13 GLY L 91 ASN L 92 THR L 93 LEU L 94 SITE 4 AC1 13 PRO L 96 CRYST1 62.310 62.310 232.719 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016049 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016049 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004297 0.00000