HEADER TRANSFERASE 31-MAR-15 4UIP TITLE THE COMPLEX STRUCTURE OF EXTRACELLULAR DOMAIN OF EGFR WITH REPEBODY TITLE 2 (RAC1). CAVEAT 4UIP NAG A 1614 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 26-637; COMPND 5 SYNONYM: PROTO-ONCOGENE C-ERBB-1, RECEPTOR TYROSINE-PROTEIN KINASE E COMPND 6 RBB-1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: REPEBODY (RAC1); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES, SYNTHETIC CONSTRUCT, SOURCE 10 EPTATRETUS BURGERI; SOURCE 11 ORGANISM_TAXID: 1639, 32630, 7764; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.KANG,Y.J.CHA,H.S.CHO,J.J.LEE,H.S.KIM REVDAT 5 10-JAN-24 4UIP 1 HETSYN REVDAT 4 29-JUL-20 4UIP 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 15-MAR-17 4UIP 1 SOURCE REVDAT 2 23-DEC-15 4UIP 1 TITLE COMPND REVDAT 1 25-NOV-15 4UIP 0 JRNL AUTH J.LEE,H.CHOI,M.YUN,Y.KANG,J.JUNG,Y.RYU,T.Y.KIM,Y.CHA,H.CHO, JRNL AUTH 2 J.MIN,C.CHUNG,H.KIM JRNL TITL ENZYMATIC PRENYLATION AND OXIME LIGATION FOR THE SYNTHESIS JRNL TITL 2 OF STABLE AND HOMOGENEOUS PROTEIN-DRUG CONJUGATES FOR JRNL TITL 3 TARGETED THERAPY. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 54 12020 2015 JRNL REFN ISSN 1433-7851 JRNL PMID 26315561 JRNL DOI 10.1002/ANIE.201505964 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1238 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1522 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6583 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.481 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.362 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.592 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.892 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.827 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6792 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9221 ; 1.853 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 848 ; 7.743 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;41.193 ;25.163 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1171 ;17.157 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;19.464 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1030 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5118 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4UIP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063515. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 93.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23060 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4J4L REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.17000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.60500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.17000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 94.60500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 614 REMARK 465 HIS A 615 REMARK 465 HIS A 616 REMARK 465 HIS A 617 REMARK 465 HIS A 618 REMARK 465 HIS A 619 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 THR B 3 REMARK 465 ILE B 4 REMARK 465 THR B 5 REMARK 465 LEU B 244 REMARK 465 GLU B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 600 SG CYS A 612 0.72 REMARK 500 SG CYS A 558 SG CYS A 567 1.00 REMARK 500 SG CYS B 198 SG CYS B 241 1.05 REMARK 500 O VAL A 505 O CYS A 511 1.16 REMARK 500 SG CYS A 287 SG CYS A 302 1.26 REMARK 500 O PRO A 130 ND2 ASN A 158 1.29 REMARK 500 OE1 GLU A 296 NZ LYS A 303 1.33 REMARK 500 CB CYS A 534 SG CYS A 547 1.67 REMARK 500 CB CYS A 600 SG CYS A 612 1.67 REMARK 500 O PRO A 607 O GLY A 608 1.79 REMARK 500 O CYS A 486 NH2 ARG A 503 1.81 REMARK 500 NH2 ARG A 523 O GLN A 541 1.88 REMARK 500 OE1 GLU A 489 OG SER A 501 1.91 REMARK 500 OE1 GLU A 293 O HOH A 2013 2.06 REMARK 500 O SER B 118 O ALA B 142 2.08 REMARK 500 C VAL A 505 O CYS A 511 2.11 REMARK 500 NH2 ARG B 67 O HOH B 2002 2.12 REMARK 500 NE2 GLN B 97 O HOH B 2003 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 3 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 CYS A 502 CB - CA - C ANGL. DEV. = 8.8 DEGREES REMARK 500 CYS A 515 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 LEU A 517 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 CYS A 547 CA - CB - SG ANGL. DEV. = 11.3 DEGREES REMARK 500 CYS A 571 CA - CB - SG ANGL. DEV. = -11.6 DEGREES REMARK 500 CYS A 596 CA - CB - SG ANGL. DEV. = -11.9 DEGREES REMARK 500 CYS A 612 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG B 164 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 PRO B 199 C - N - CD ANGL. DEV. = 18.4 DEGREES REMARK 500 PRO B 242 C - N - CD ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 11 50.99 -149.77 REMARK 500 LYS A 13 -120.46 59.15 REMARK 500 LEU A 52 41.27 -95.24 REMARK 500 ASN A 134 -15.81 82.86 REMARK 500 SER A 153 76.61 -119.87 REMARK 500 ASP A 167 121.64 -34.18 REMARK 500 THR A 187 11.56 -143.50 REMARK 500 LYS A 188 -52.59 -128.81 REMARK 500 LYS A 229 -81.56 -97.92 REMARK 500 TYR A 251 -14.13 73.17 REMARK 500 ALA A 289 -8.61 -57.53 REMARK 500 GLU A 306 -23.33 90.51 REMARK 500 ILE A 327 108.45 -57.52 REMARK 500 GLN A 411 -52.41 -123.22 REMARK 500 TYR A 447 -13.17 89.92 REMARK 500 PRO A 488 10.29 -64.56 REMARK 500 ASN A 504 -85.29 -106.57 REMARK 500 ARG A 507 -74.54 -92.07 REMARK 500 CYS A 511 -67.54 -102.26 REMARK 500 VAL A 512 -126.60 -127.17 REMARK 500 ASN A 516 85.08 -66.95 REMARK 500 ASN A 544 -168.58 -125.37 REMARK 500 ASN A 554 32.33 -94.80 REMARK 500 HIS A 560 -90.24 -119.73 REMARK 500 ASN B 74 -164.88 -108.06 REMARK 500 ASN B 96 -153.03 -115.27 REMARK 500 GLU B 119 34.02 -147.68 REMARK 500 GLN B 121 62.12 -109.30 REMARK 500 LEU B 133 54.93 -99.82 REMARK 500 ASN B 144 -159.52 -106.07 REMARK 500 ASN B 168 -161.91 -121.40 REMARK 500 ALA B 223 78.24 -158.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 274 TYR A 275 -145.74 REMARK 500 ASP A 290 SER A 291 -149.64 REMARK 500 VAL A 512 ASP A 513 -36.72 REMARK 500 GLU A 521 PRO A 522 142.02 REMARK 500 LEU A 609 GLU A 610 42.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3009 DISTANCE = 9.02 ANGSTROMS REMARK 525 HOH A3011 DISTANCE = 6.43 ANGSTROMS DBREF 4UIP A 2 613 UNP P00533 EGFR_HUMAN 26 637 DBREF 4UIP B 2 66 UNP E0ACT6 E0ACT6_LISMN 33 97 DBREF 4UIP B 67 151 PDB 4UIP 4UIP 67 151 DBREF 4UIP B 152 243 UNP Q4G1L3 Q4G1L3_EPTBU 141 232 SEQADV 4UIP HIS A 614 UNP P00533 EXPRESSION TAG SEQADV 4UIP HIS A 615 UNP P00533 EXPRESSION TAG SEQADV 4UIP HIS A 616 UNP P00533 EXPRESSION TAG SEQADV 4UIP HIS A 617 UNP P00533 EXPRESSION TAG SEQADV 4UIP HIS A 618 UNP P00533 EXPRESSION TAG SEQADV 4UIP HIS A 619 UNP P00533 EXPRESSION TAG SEQADV 4UIP MET B 1 UNP E0ACT6 EXPRESSION TAG SEQADV 4UIP ALA B 25 UNP E0ACT6 ASP 56 CONFLICT SEQADV 4UIP LEU B 244 UNP Q4G1L3 EXPRESSION TAG SEQADV 4UIP GLU B 245 UNP Q4G1L3 EXPRESSION TAG SEQADV 4UIP HIS B 246 UNP Q4G1L3 EXPRESSION TAG SEQADV 4UIP HIS B 247 UNP Q4G1L3 EXPRESSION TAG SEQADV 4UIP HIS B 248 UNP Q4G1L3 EXPRESSION TAG SEQADV 4UIP HIS B 249 UNP Q4G1L3 EXPRESSION TAG SEQADV 4UIP HIS B 250 UNP Q4G1L3 EXPRESSION TAG SEQADV 4UIP HIS B 251 UNP Q4G1L3 EXPRESSION TAG SEQRES 1 A 618 GLU GLU LYS LYS VAL CYS GLN GLY THR SER ASN LYS LEU SEQRES 2 A 618 THR GLN LEU GLY THR PHE GLU ASP HIS PHE LEU SER LEU SEQRES 3 A 618 GLN ARG MET PHE ASN ASN CYS GLU VAL VAL LEU GLY ASN SEQRES 4 A 618 LEU GLU ILE THR TYR VAL GLN ARG ASN TYR ASP LEU SER SEQRES 5 A 618 PHE LEU LYS THR ILE GLN GLU VAL ALA GLY TYR VAL LEU SEQRES 6 A 618 ILE ALA LEU ASN THR VAL GLU ARG ILE PRO LEU GLU ASN SEQRES 7 A 618 LEU GLN ILE ILE ARG GLY ASN MET TYR TYR GLU ASN SER SEQRES 8 A 618 TYR ALA LEU ALA VAL LEU SER ASN TYR ASP ALA ASN LYS SEQRES 9 A 618 THR GLY LEU LYS GLU LEU PRO MET ARG ASN LEU GLN GLU SEQRES 10 A 618 ILE LEU HIS GLY ALA VAL ARG PHE SER ASN ASN PRO ALA SEQRES 11 A 618 LEU CYS ASN VAL GLU SER ILE GLN TRP ARG ASP ILE VAL SEQRES 12 A 618 SER SER ASP PHE LEU SER ASN MET SER MET ASP PHE GLN SEQRES 13 A 618 ASN HIS LEU GLY SER CYS GLN LYS CYS ASP PRO SER CYS SEQRES 14 A 618 PRO ASN GLY SER CYS TRP GLY ALA GLY GLU GLU ASN CYS SEQRES 15 A 618 GLN LYS LEU THR LYS ILE ILE CYS ALA GLN GLN CYS SER SEQRES 16 A 618 GLY ARG CYS ARG GLY LYS SER PRO SER ASP CYS CYS HIS SEQRES 17 A 618 ASN GLN CYS ALA ALA GLY CYS THR GLY PRO ARG GLU SER SEQRES 18 A 618 ASP CYS LEU VAL CYS ARG LYS PHE ARG ASP GLU ALA THR SEQRES 19 A 618 CYS LYS ASP THR CYS PRO PRO LEU MET LEU TYR ASN PRO SEQRES 20 A 618 THR THR TYR GLN MET ASP VAL ASN PRO GLU GLY LYS TYR SEQRES 21 A 618 SER PHE GLY ALA THR CYS VAL LYS LYS CYS PRO ARG ASN SEQRES 22 A 618 TYR VAL VAL THR ASP HIS GLY SER CYS VAL ARG ALA CYS SEQRES 23 A 618 GLY ALA ASP SER TYR GLU MET GLU GLU ASP GLY VAL ARG SEQRES 24 A 618 LYS CYS LYS LYS CYS GLU GLY PRO CYS ARG LYS VAL CYS SEQRES 25 A 618 ASN GLY ILE GLY ILE GLY GLU PHE LYS ASP SER LEU SER SEQRES 26 A 618 ILE ASN ALA THR ASN ILE LYS HIS PHE LYS ASN CYS THR SEQRES 27 A 618 SER ILE SER GLY ASP LEU HIS ILE LEU PRO VAL ALA PHE SEQRES 28 A 618 ARG GLY ASP SER PHE THR HIS THR PRO PRO LEU ASP PRO SEQRES 29 A 618 GLN GLU LEU ASP ILE LEU LYS THR VAL LYS GLU ILE THR SEQRES 30 A 618 GLY PHE LEU LEU ILE GLN ALA TRP PRO GLU ASN ARG THR SEQRES 31 A 618 ASP LEU HIS ALA PHE GLU ASN LEU GLU ILE ILE ARG GLY SEQRES 32 A 618 ARG THR LYS GLN HIS GLY GLN PHE SER LEU ALA VAL VAL SEQRES 33 A 618 SER LEU ASN ILE THR SER LEU GLY LEU ARG SER LEU LYS SEQRES 34 A 618 GLU ILE SER ASP GLY ASP VAL ILE ILE SER GLY ASN LYS SEQRES 35 A 618 ASN LEU CYS TYR ALA ASN THR ILE ASN TRP LYS LYS LEU SEQRES 36 A 618 PHE GLY THR SER GLY GLN LYS THR LYS ILE ILE SER ASN SEQRES 37 A 618 ARG GLY GLU ASN SER CYS LYS ALA THR GLY GLN VAL CYS SEQRES 38 A 618 HIS ALA LEU CYS SER PRO GLU GLY CYS TRP GLY PRO GLU SEQRES 39 A 618 PRO ARG ASP CYS VAL SER CYS ARG ASN VAL SER ARG GLY SEQRES 40 A 618 ARG GLU CYS VAL ASP LYS CYS ASN LEU LEU GLU GLY GLU SEQRES 41 A 618 PRO ARG GLU PHE VAL GLU ASN SER GLU CYS ILE GLN CYS SEQRES 42 A 618 HIS PRO GLU CYS LEU PRO GLN ALA MET ASN ILE THR CYS SEQRES 43 A 618 THR GLY ARG GLY PRO ASP ASN CYS ILE GLN CYS ALA HIS SEQRES 44 A 618 TYR ILE ASP GLY PRO HIS CYS VAL LYS THR CYS PRO ALA SEQRES 45 A 618 GLY VAL MET GLY GLU ASN ASN THR LEU VAL TRP LYS TYR SEQRES 46 A 618 ALA ASP ALA GLY HIS VAL CYS HIS LEU CYS HIS PRO ASN SEQRES 47 A 618 CYS THR TYR GLY CYS THR GLY PRO GLY LEU GLU GLY CYS SEQRES 48 A 618 PRO HIS HIS HIS HIS HIS HIS SEQRES 1 B 251 MET GLU THR ILE THR VAL SER THR PRO ILE LYS GLN ILE SEQRES 2 B 251 PHE PRO ASP ASP ALA PHE ALA GLU THR ILE LYS ALA ASN SEQRES 3 B 251 LEU LYS LYS LYS SER VAL THR ASP ALA VAL THR GLN ASN SEQRES 4 B 251 GLU LEU ASN SER ILE ASP GLN ILE ILE ALA ASN ASN SER SEQRES 5 B 251 ASP ILE LYS SER VAL GLN GLY ILE GLN TYR LEU PRO ASN SEQRES 6 B 251 VAL ARG TYR LEU ALA LEU GLY GLY ASN LYS LEU HIS ASP SEQRES 7 B 251 ILE SER ALA LEU LYS GLU LEU THR ASN LEU THR TYR LEU SEQRES 8 B 251 MET LEU HIS TYR ASN GLN LEU GLN ILE LEU PRO ASN GLY SEQRES 9 B 251 VAL PHE ASP LYS LEU THR ASN LEU LYS GLU LEU TYR LEU SEQRES 10 B 251 SER GLU ASN GLN LEU GLN SER LEU PRO ASP GLY VAL PHE SEQRES 11 B 251 ASP LYS LEU THR ASN LEU THR GLU LEU ASP LEU ALA ARG SEQRES 12 B 251 ASN GLN LEU GLN SER LEU PRO LYS GLY VAL PHE ASP LYS SEQRES 13 B 251 LEU THR GLN LEU LYS ASP LEU ARG LEU TYR GLN ASN GLN SEQRES 14 B 251 LEU LYS SER VAL PRO ASP GLY VAL PHE ASP ARG LEU THR SEQRES 15 B 251 SER LEU GLN TYR ILE TRP LEU HIS ASP ASN PRO TRP ASP SEQRES 16 B 251 CYS THR CYS PRO GLY ILE ARG TYR LEU SER GLU TRP ILE SEQRES 17 B 251 ASN LYS HIS SER GLY VAL VAL ARG ASN SER ALA GLY SER SEQRES 18 B 251 VAL ALA PRO ASP SER ALA LYS CYS SER GLY SER GLY LYS SEQRES 19 B 251 PRO VAL ARG SER ILE ILE CYS PRO THR LEU GLU HIS HIS SEQRES 20 B 251 HIS HIS HIS HIS MODRES 4UIP ASN A 328 ASN GLYCOSYLATION SITE MODRES 4UIP ASN A 420 ASN GLYCOSYLATION SITE MODRES 4UIP ASN A 504 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG A1614 14 HET NAG A1615 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 6 HOH *41(H2 O) HELIX 1 1 THR A 19 PHE A 31 1 13 HELIX 2 2 LEU A 52 ILE A 58 5 7 HELIX 3 3 PHE A 148 MET A 152 5 5 HELIX 4 4 CYS A 170 SER A 174 5 5 HELIX 5 5 GLY A 179 ASN A 182 5 4 HELIX 6 6 ILE A 318 LYS A 322 5 5 HELIX 7 7 ILE A 332 LYS A 336 5 5 HELIX 8 8 PRO A 349 GLY A 354 1 6 HELIX 9 9 ASP A 364 VAL A 374 5 11 HELIX 10 10 TYR A 447 ILE A 451 5 5 HELIX 11 11 ASN A 452 LEU A 456 5 5 HELIX 12 12 GLY A 471 THR A 478 1 8 HELIX 13 13 GLU A 578 ASN A 580 5 3 HELIX 14 14 ILE B 10 PHE B 14 1 5 HELIX 15 15 ASP B 16 LEU B 27 1 12 HELIX 16 16 THR B 37 ASN B 42 1 6 HELIX 17 17 GLY B 59 LEU B 63 5 5 HELIX 18 18 ILE B 79 LYS B 83 5 5 HELIX 19 19 ILE B 201 HIS B 211 1 11 HELIX 20 20 ALA B 223 ALA B 227 5 5 HELIX 21 21 VAL B 236 ILE B 239 5 4 SHEET 1 AA 5 VAL A 6 CYS A 7 0 SHEET 2 AA 5 VAL A 36 VAL A 37 1 O VAL A 36 N CYS A 7 SHEET 3 AA 5 GLU A 60 VAL A 61 1 O GLU A 60 N VAL A 37 SHEET 4 AA 5 ILE A 82 ILE A 83 1 O ILE A 82 N VAL A 61 SHEET 5 AA 5 GLU A 118 ILE A 119 1 O GLU A 118 N ILE A 83 SHEET 1 AB 5 LEU A 41 THR A 44 0 SHEET 2 AB 5 VAL A 65 ALA A 68 1 O LEU A 66 N ILE A 43 SHEET 3 AB 5 TYR A 93 LEU A 98 1 O ALA A 94 N VAL A 65 SHEET 4 AB 5 ALA A 123 SER A 127 1 O ALA A 123 N ALA A 94 SHEET 5 AB 5 SER A 153 MET A 154 1 O SER A 153 N PHE A 126 SHEET 1 AC 2 PHE A 230 ARG A 231 0 SHEET 2 AC 2 CYS A 236 LYS A 237 -1 O LYS A 237 N PHE A 230 SHEET 1 AD 2 MET A 244 TYR A 246 0 SHEET 2 AD 2 MET A 253 VAL A 255 -1 O ASP A 254 N LEU A 245 SHEET 1 AE 2 TYR A 261 PHE A 263 0 SHEET 2 AE 2 THR A 266 VAL A 268 -1 O THR A 266 N PHE A 263 SHEET 1 AF 2 VAL A 276 VAL A 277 0 SHEET 2 AF 2 CYS A 283 VAL A 284 -1 O VAL A 284 N VAL A 276 SHEET 1 AG 2 SER A 291 GLU A 296 0 SHEET 2 AG 2 VAL A 299 LYS A 304 -1 O VAL A 299 N GLU A 296 SHEET 1 AH 5 VAL A 312 ASN A 314 0 SHEET 2 AH 5 SER A 340 SER A 342 1 O SER A 340 N CYS A 313 SHEET 3 AH 5 GLU A 376 ILE A 377 1 O GLU A 376 N ILE A 341 SHEET 4 AH 5 ILE A 401 ILE A 402 1 O ILE A 401 N ILE A 377 SHEET 5 AH 5 GLU A 431 ILE A 432 1 O GLU A 431 N ILE A 402 SHEET 1 AI 5 LEU A 345 ILE A 347 0 SHEET 2 AI 5 LEU A 381 ILE A 383 1 O LEU A 382 N ILE A 347 SHEET 3 AI 5 PHE A 412 VAL A 417 1 O SER A 413 N LEU A 381 SHEET 4 AI 5 ASP A 436 SER A 440 1 O ASP A 436 N SER A 413 SHEET 5 AI 5 THR A 464 ILE A 467 1 O LYS A 465 N ILE A 439 SHEET 1 AJ 2 GLU A 524 GLU A 527 0 SHEET 2 AJ 2 GLU A 530 GLN A 533 -1 O GLU A 530 N GLU A 527 SHEET 1 AK 2 TYR A 561 ASP A 563 0 SHEET 2 AK 2 HIS A 566 VAL A 568 -1 O HIS A 566 N ASP A 563 SHEET 1 AL 3 ALA A 573 MET A 576 0 SHEET 2 AL 3 LEU A 582 ALA A 587 -1 O VAL A 583 N GLY A 574 SHEET 3 AL 3 CYS A 593 LEU A 595 -1 O HIS A 594 N TYR A 586 SHEET 1 BA 2 THR B 8 PRO B 9 0 SHEET 2 BA 2 ALA B 35 VAL B 36 -1 O VAL B 36 N THR B 8 SHEET 1 BB 8 GLN B 46 ILE B 48 0 SHEET 2 BB 8 TYR B 68 ALA B 70 1 O TYR B 68 N ILE B 47 SHEET 3 BB 8 TYR B 90 MET B 92 1 O TYR B 90 N LEU B 69 SHEET 4 BB 8 GLU B 114 TYR B 116 1 O GLU B 114 N LEU B 91 SHEET 5 BB 8 GLU B 138 ASP B 140 1 O GLU B 138 N LEU B 115 SHEET 6 BB 8 ASP B 162 ARG B 164 1 O ASP B 162 N LEU B 139 SHEET 7 BB 8 TYR B 186 TRP B 188 1 O TYR B 186 N LEU B 163 SHEET 8 BB 8 VAL B 215 ARG B 216 1 N ARG B 216 O ILE B 187 SSBOND 1 CYS A 7 CYS A 34 1555 1555 2.00 SSBOND 2 CYS A 166 CYS A 175 1555 1555 2.06 SSBOND 3 CYS A 170 CYS A 183 1555 1555 2.06 SSBOND 4 CYS A 191 CYS A 199 1555 1555 2.05 SSBOND 5 CYS A 195 CYS A 207 1555 1555 2.05 SSBOND 6 CYS A 208 CYS A 216 1555 1555 1.97 SSBOND 7 CYS A 212 CYS A 224 1555 1555 2.06 SSBOND 8 CYS A 227 CYS A 236 1555 1555 2.07 SSBOND 9 CYS A 240 CYS A 267 1555 1555 2.07 SSBOND 10 CYS A 271 CYS A 283 1555 1555 1.48 SSBOND 11 CYS A 305 CYS A 309 1555 1555 2.09 SSBOND 12 CYS A 313 CYS A 338 1555 1555 2.02 SSBOND 13 CYS A 446 CYS A 475 1555 1555 2.11 SSBOND 14 CYS A 482 CYS A 491 1555 1555 2.06 SSBOND 15 CYS A 486 CYS A 499 1555 1555 2.03 SSBOND 16 CYS A 502 CYS A 511 1555 1555 1.89 SSBOND 17 CYS A 515 CYS A 531 1555 1555 2.01 SSBOND 18 CYS A 534 CYS A 547 1555 1555 2.28 SSBOND 19 CYS A 538 CYS A 555 1555 1555 1.91 SSBOND 20 CYS A 571 CYS A 593 1555 1555 1.94 SSBOND 21 CYS A 596 CYS A 604 1555 1555 1.95 SSBOND 22 CYS B 196 CYS B 229 1555 1555 1.99 LINK ND2 ASN A 328 C1 NAG C 1 1555 1555 1.39 LINK ND2 ASN A 420 C1 NAG A1614 1555 1555 1.43 LINK ND2 ASN A 504 C1 NAG A1615 1555 1555 1.49 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 CISPEP 1 CYS B 198 PRO B 199 0 9.27 CRYST1 66.790 88.340 189.210 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011320 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005285 0.00000