HEADER TRANSFERASE/INHIBITOR 07-APR-15 4UJ1 TITLE PROTEIN KINASE A IN COMPLEX WITH AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 6-25; COMPND 11 SYNONYM: PKI-ALPHA, CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, COMPND 12 MUSCLE/BRAIN ISOFORM; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS TRANSFERASE-INHIBITOR COMPLEX, PROTEIN KINASE A EXPDTA X-RAY DIFFRACTION AUTHOR K.A.ALAM,R.A.ENGH REVDAT 4 10-JAN-24 4UJ1 1 REMARK LINK REVDAT 3 06-FEB-19 4UJ1 1 REMARK REVDAT 2 30-JAN-19 4UJ1 1 REMARK REVDAT 1 13-APR-16 4UJ1 0 JRNL AUTH B.S.LAUBER,L.A.HARDEGGER,A.K.ASRAFUL,B.A.LUND,O.DUMELE, JRNL AUTH 2 M.HARDER,B.KUHN,R.A.ENGH,F.DIEDERICH JRNL TITL ADDRESSING THE GLYCINE-RICH LOOP OF PROTEIN KINASES BY A JRNL TITL 2 MULTI-FACETTED INTERACTION NETWORK: INHIBITION OF PKA AND A JRNL TITL 3 PKB MIMIC. JRNL REF CHEMISTRY V. 22 211 2016 JRNL REFN ISSN 0947-6539 JRNL PMID 26578105 JRNL DOI 10.1002/CHEM.201503552 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 42971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1263 - 4.3589 1.00 2949 156 0.1648 0.1840 REMARK 3 2 4.3589 - 3.4604 1.00 2816 148 0.1433 0.1666 REMARK 3 3 3.4604 - 3.0231 1.00 2799 147 0.1625 0.1844 REMARK 3 4 3.0231 - 2.7468 1.00 2774 146 0.1655 0.2106 REMARK 3 5 2.7468 - 2.5500 1.00 2754 145 0.1702 0.2214 REMARK 3 6 2.5500 - 2.3996 1.00 2751 145 0.1570 0.1782 REMARK 3 7 2.3996 - 2.2795 1.00 2748 145 0.1574 0.2201 REMARK 3 8 2.2795 - 2.1803 1.00 2746 144 0.1596 0.2162 REMARK 3 9 2.1803 - 2.0963 1.00 2725 144 0.1627 0.2103 REMARK 3 10 2.0963 - 2.0240 1.00 2743 144 0.1745 0.2122 REMARK 3 11 2.0240 - 1.9607 1.00 2703 142 0.1925 0.2720 REMARK 3 12 1.9607 - 1.9047 1.00 2716 143 0.2093 0.2189 REMARK 3 13 1.9047 - 1.8545 0.99 2687 142 0.2112 0.2935 REMARK 3 14 1.8545 - 1.8093 0.97 2642 139 0.2335 0.2907 REMARK 3 15 1.8093 - 1.7682 0.83 2269 119 0.2487 0.2663 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 3047 REMARK 3 ANGLE : 1.759 4116 REMARK 3 CHIRALITY : 0.162 430 REMARK 3 PLANARITY : 0.009 522 REMARK 3 DIHEDRAL : 15.505 1143 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.4397 10.9116 -9.1977 REMARK 3 T TENSOR REMARK 3 T11: 0.2053 T22: 0.3113 REMARK 3 T33: 0.2882 T12: 0.0203 REMARK 3 T13: -0.0727 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.3970 L22: 0.3808 REMARK 3 L33: 0.4594 L12: -0.0016 REMARK 3 L13: -0.2265 L23: -0.3538 REMARK 3 S TENSOR REMARK 3 S11: 0.0627 S12: -0.0636 S13: -0.0539 REMARK 3 S21: -0.1351 S22: 0.0032 S23: 0.1420 REMARK 3 S31: -0.0029 S32: -0.4561 S33: 0.1243 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0269 19.7686 -0.0012 REMARK 3 T TENSOR REMARK 3 T11: 0.0654 T22: 0.2167 REMARK 3 T33: 0.2011 T12: 0.0245 REMARK 3 T13: 0.0218 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.1862 L22: 0.1267 REMARK 3 L33: 1.0218 L12: -0.0799 REMARK 3 L13: -0.2761 L23: -0.3232 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: -0.1616 S13: 0.1744 REMARK 3 S21: 0.1337 S22: 0.1236 S23: -0.0384 REMARK 3 S31: -0.2855 S32: -0.1749 S33: -0.0114 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3967 8.9297 -2.1578 REMARK 3 T TENSOR REMARK 3 T11: 0.0817 T22: 0.1764 REMARK 3 T33: 0.1556 T12: -0.0088 REMARK 3 T13: -0.0065 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.4919 L22: 0.7085 REMARK 3 L33: 0.7386 L12: -0.3732 REMARK 3 L13: 0.0547 L23: 0.3006 REMARK 3 S TENSOR REMARK 3 S11: -0.0320 S12: -0.0637 S13: 0.0673 REMARK 3 S21: 0.0020 S22: 0.0337 S23: 0.0909 REMARK 3 S31: 0.0192 S32: -0.2212 S33: -0.0482 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4364 -8.2199 -2.4533 REMARK 3 T TENSOR REMARK 3 T11: 0.2050 T22: 0.1164 REMARK 3 T33: 0.1176 T12: -0.0242 REMARK 3 T13: 0.0159 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.7538 L22: 1.2610 REMARK 3 L33: 1.5600 L12: -0.0793 REMARK 3 L13: 0.3094 L23: -0.4128 REMARK 3 S TENSOR REMARK 3 S11: 0.0304 S12: 0.0059 S13: -0.1380 REMARK 3 S21: -0.0710 S22: -0.0484 S23: 0.0229 REMARK 3 S31: 0.4653 S32: -0.0064 S33: 0.0175 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5317 20.2611 1.4408 REMARK 3 T TENSOR REMARK 3 T11: 0.2630 T22: 0.2769 REMARK 3 T33: 0.2664 T12: 0.0227 REMARK 3 T13: -0.0287 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.4013 L22: 0.6554 REMARK 3 L33: 0.3112 L12: -0.4851 REMARK 3 L13: -0.0950 L23: 0.0753 REMARK 3 S TENSOR REMARK 3 S11: -0.0808 S12: -0.1800 S13: 0.1724 REMARK 3 S21: 0.1734 S22: 0.0804 S23: -0.1353 REMARK 3 S31: -0.3172 S32: 0.0725 S33: -0.0053 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9417 -8.3161 16.0668 REMARK 3 T TENSOR REMARK 3 T11: 0.2188 T22: 0.2410 REMARK 3 T33: 0.1461 T12: 0.0107 REMARK 3 T13: 0.0301 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.0059 L22: 0.0282 REMARK 3 L33: 0.0192 L12: 0.0045 REMARK 3 L13: 0.0104 L23: 0.0021 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.0440 S13: -0.0487 REMARK 3 S21: 0.0369 S22: -0.1820 S23: 0.0163 REMARK 3 S31: 0.0759 S32: 0.1263 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6586 3.3718 4.1273 REMARK 3 T TENSOR REMARK 3 T11: 0.2761 T22: 0.2435 REMARK 3 T33: 0.1792 T12: -0.0031 REMARK 3 T13: -0.0114 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.2121 L22: 0.1931 REMARK 3 L33: 0.4399 L12: 0.1062 REMARK 3 L13: 0.0514 L23: 0.0547 REMARK 3 S TENSOR REMARK 3 S11: -0.1077 S12: 0.2151 S13: 0.1961 REMARK 3 S21: -0.3077 S22: -0.0351 S23: -0.1810 REMARK 3 S31: -0.3320 S32: 0.4488 S33: -0.0100 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-15. REMARK 100 THE DEPOSITION ID IS D_1290063553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42975 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 40.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.2 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3VQH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML PROTEIN, 25MM BISTRIS/MES REMARK 280 PH6.9, 50MM KCL, 1.5MM OCTANOYL-N-METHYLGLUCAMIDE, 1MM PROTEIN REMARK 280 KINASE INHIBITOR PEPTIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.17800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.11600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.70450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.11600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.17800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.70450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 GLN A 12 REMARK 465 GLU A 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 319 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2077 O HOH A 2157 2.05 REMARK 500 O HOH A 2259 O HOH A 2260 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 16 O HOH A 2034 3444 2.01 REMARK 500 O HOH A 2213 O HOH B 2015 2454 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 194 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 194 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 LEU A 227 CB - CG - CD2 ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 54 -2.80 60.53 REMARK 500 ASP A 166 44.08 -147.81 REMARK 500 THR A 183 -163.80 -123.61 REMARK 500 ASP A 184 70.56 61.68 REMARK 500 ASN A 216 -157.86 -147.63 REMARK 500 LEU A 273 47.45 -91.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2052 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A2080 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2081 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A3033 DISTANCE = 5.96 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NVX A 1351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1352 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UJ2 RELATED DB: PDB REMARK 900 PKA INHIBITOR COMPLEX REMARK 900 RELATED ID: 4UJ9 RELATED DB: PDB REMARK 900 PROTEIN KINASE A IN COMPLEX WITH AN INHIBITOR REMARK 900 RELATED ID: 4UJA RELATED DB: PDB REMARK 900 PROTEIN KINASE A IN COMPLEX WITH AN INHIBITOR REMARK 900 RELATED ID: 4UJB RELATED DB: PDB REMARK 900 PROTEIN KINASE A IN COMPLEX WITH AN INHIBITOR DBREF 4UJ1 A 0 350 UNP P17612 KAPCA_HUMAN 1 351 DBREF 4UJ1 B 5 24 UNP P61925 IPKA_HUMAN 6 25 SEQRES 1 A 351 MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN SEQRES 2 A 351 GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP SEQRES 3 A 351 PHE LEU LYS LYS TRP GLU SER PRO ALA GLN ASN THR ALA SEQRES 4 A 351 HIS LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR SEQRES 5 A 351 GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SEQRES 6 A 351 THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN SEQRES 7 A 351 LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN SEQRES 8 A 351 GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU SEQRES 9 A 351 VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU SEQRES 10 A 351 TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU MET PHE SEQRES 11 A 351 SER HIS LEU ARG ARG ILE GLY ARG PHE SER GLU PRO HIS SEQRES 12 A 351 ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU SEQRES 13 A 351 TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS SEQRES 14 A 351 PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN SEQRES 15 A 351 VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG SEQRES 16 A 351 THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO SEQRES 17 A 351 GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP SEQRES 18 A 351 TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA SEQRES 19 A 351 GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE SEQRES 20 A 351 TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER SEQRES 21 A 351 HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU SEQRES 22 A 351 LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS SEQRES 23 A 351 ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA SEQRES 24 A 351 THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU SEQRES 25 A 351 ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SEQRES 26 A 351 SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEQRES 27 A 351 SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE SEQRES 1 B 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 B 20 ARG ARG ASN ALA ILE HIS ASP MODRES 4UJ1 TPO A 197 THR PHOSPHOTHREONINE MODRES 4UJ1 SEP A 338 SER PHOSPHOSERINE HET TPO A 197 11 HET SEP A 338 10 HET NVX A1351 25 HET MPD A1352 8 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM NVX 7-[(3S,4R)-4-(3-CHLOROPHENYL)CARBONYLPYRROLIDIN-3-YL]- HETNAM 2 NVX 3H-QUINAZOLIN-4-ONE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 SEP C3 H8 N O6 P FORMUL 3 NVX C19 H16 CL N3 O2 FORMUL 4 MPD C6 H14 O2 FORMUL 5 HOH *357(H2 O) HELIX 1 1 SER A 14 SER A 32 1 19 HELIX 2 2 HIS A 39 ASP A 41 5 3 HELIX 3 3 LYS A 76 LEU A 82 1 7 HELIX 4 4 GLN A 84 GLN A 96 1 13 HELIX 5 5 GLU A 127 GLY A 136 1 10 HELIX 6 6 SER A 139 LEU A 160 1 22 HELIX 7 7 LYS A 168 GLU A 170 5 3 HELIX 8 8 THR A 201 LEU A 205 5 5 HELIX 9 9 ALA A 206 LEU A 211 1 6 HELIX 10 10 LYS A 217 GLY A 234 1 18 HELIX 11 11 GLN A 242 SER A 252 1 11 HELIX 12 12 SER A 262 LEU A 273 1 12 HELIX 13 13 VAL A 288 ASN A 293 1 6 HELIX 14 14 HIS A 294 ALA A 298 5 5 HELIX 15 15 ASP A 301 GLN A 307 1 7 HELIX 16 16 THR B 5 ALA B 12 1 8 SHEET 1 AA 5 PHE A 43 GLY A 52 0 SHEET 2 AA 5 GLY A 55 HIS A 62 -1 O GLY A 55 N GLY A 52 SHEET 3 AA 5 HIS A 68 ASP A 75 -1 O TYR A 69 N VAL A 60 SHEET 4 AA 5 ASN A 115 GLU A 121 -1 O LEU A 116 N LEU A 74 SHEET 5 AA 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AB 2 LEU A 162 ILE A 163 0 SHEET 2 AB 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AC 2 LEU A 172 ILE A 174 0 SHEET 2 AC 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 SHEET 1 AD 2 CYS A 199 GLY A 200 0 SHEET 2 AD 2 ILE B 22 HIS B 23 -1 O ILE B 22 N GLY A 200 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.32 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.34 SITE 1 AC1 16 GLY A 50 GLY A 55 ARG A 56 VAL A 57 SITE 2 AC1 16 ALA A 70 LYS A 72 GLU A 121 TYR A 122 SITE 3 AC1 16 VAL A 123 GLU A 127 GLU A 170 ASN A 171 SITE 4 AC1 16 LEU A 173 THR A 183 ASP A 184 HOH A2066 SITE 1 AC2 6 SER A 130 HIS A 131 ARG A 134 ASN A 326 SITE 2 AC2 6 PHE A 327 ASP A 328 CRYST1 72.356 75.409 80.232 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013821 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013261 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012464 0.00000