HEADER TRANSPORT PROTEIN 08-APR-15 4UJ5 TITLE CRYSTAL STRUCTURE OF HUMAN RAB11-RABIN8-FIP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-11A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GTPASE DOMAIN, RESIDUES 6-186; COMPND 5 SYNONYM: RAB-11, YL8, RAB-11, YL8, RAB11A; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RAB-3A-INTERACTING PROTEIN; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 286-476; COMPND 12 SYNONYM: RAB3A-INTERACTING PROTEIN, RABIN-3, SSX2-INTERACTING COMPND 13 PROTEIN, RAB3A-INTERACTING PROTEIN, RABIN-3, SSX2-INTERACTING COMPND 14 PROTEIN, RABIN8; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRANSPORT PROTEIN, CILIARY TARGETING COMPLEX, CILIUM, VESICU KEYWDS 2 TRANSPORT, MEMBRANE TRAFFICKING, RABIN8, RAB11, FIP3 EXPDTA X-RAY DIFFRACTION AUTHOR M.VETTER,E.LORENTZEN REVDAT 4 10-JAN-24 4UJ5 1 REMARK LINK REVDAT 3 16-SEP-15 4UJ5 1 JRNL REVDAT 2 19-AUG-15 4UJ5 1 JRNL REVDAT 1 12-AUG-15 4UJ5 0 JRNL AUTH M.VETTER,R.STEHLE,C.BASQUIN,E.LORENTZEN JRNL TITL STRUCTURE OF RAB11-FIP3-RABIN8 REVEALS SIMULTANEOUS BINDING JRNL TITL 2 OF FIP3 AND RABIN8 EFFECTORS TO RAB11. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 695 2015 JRNL REFN ISSN 1545-9993 JRNL PMID 26258637 JRNL DOI 10.1038/NSMB.3065 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.930 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 24374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6481 - 6.5535 0.91 2639 138 0.1666 0.1968 REMARK 3 2 6.5535 - 5.2045 0.94 2729 149 0.2085 0.2587 REMARK 3 3 5.2045 - 4.5474 0.92 2672 139 0.1803 0.2435 REMARK 3 4 4.5474 - 4.1320 0.91 2651 129 0.1743 0.2617 REMARK 3 5 4.1320 - 3.8360 0.90 2646 144 0.2008 0.2723 REMARK 3 6 3.8360 - 3.6099 0.93 2689 143 0.2006 0.2566 REMARK 3 7 3.6099 - 3.4292 0.94 2734 144 0.2151 0.2782 REMARK 3 8 3.4292 - 3.2800 0.95 2761 147 0.2380 0.3041 REMARK 3 9 3.2800 - 3.1538 0.95 2766 148 0.2355 0.2774 REMARK 3 10 3.1538 - 3.0450 0.96 2798 148 0.2596 0.3069 REMARK 3 11 3.0450 - 2.9498 0.93 2749 146 0.2973 0.3707 REMARK 3 12 2.9498 - 2.8655 0.90 2579 135 0.3328 0.4233 REMARK 3 13 2.8655 - 2.7901 0.89 2628 137 0.3499 0.3601 REMARK 3 14 2.7901 - 2.7220 0.91 2591 140 0.3668 0.4329 REMARK 3 15 2.7220 - 2.6601 0.92 2718 146 0.3693 0.3995 REMARK 3 16 2.6601 - 2.6035 0.88 2551 137 0.3887 0.4126 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5302 REMARK 3 ANGLE : 1.072 7223 REMARK 3 CHIRALITY : 0.039 830 REMARK 3 PLANARITY : 0.004 915 REMARK 3 DIHEDRAL : 14.065 1857 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-APR-15. REMARK 100 THE DEPOSITION ID IS D_1290063564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1YZK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.0, 0.2M LITHIUM REMARK 280 SULFATE AND 24% PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.10100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 71 REMARK 465 ARG A 72 REMARK 465 TYR A 73 REMARK 465 GLN A 180 REMARK 465 MET A 181 REMARK 465 SER A 182 REMARK 465 ASP A 183 REMARK 465 ARG A 184 REMARK 465 ARG A 185 REMARK 465 GLU A 186 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 SER B 5 REMARK 465 ASP B 6 REMARK 465 LYS B 179 REMARK 465 GLN B 180 REMARK 465 MET B 181 REMARK 465 SER B 182 REMARK 465 ASP B 183 REMARK 465 ARG B 184 REMARK 465 ARG B 185 REMARK 465 GLU B 186 REMARK 465 GLY C 266 REMARK 465 ALA C 267 REMARK 465 ALA C 268 REMARK 465 SER C 269 REMARK 465 ASN C 270 REMARK 465 LYS C 271 REMARK 465 SER C 272 REMARK 465 THR C 273 REMARK 465 SER C 274 REMARK 465 SER C 275 REMARK 465 ALA C 276 REMARK 465 MET C 277 REMARK 465 SER C 278 REMARK 465 GLY C 279 REMARK 465 SER C 280 REMARK 465 HIS C 281 REMARK 465 GLN C 282 REMARK 465 ASP C 283 REMARK 465 LEU C 284 REMARK 465 SER C 285 REMARK 465 VAL C 286 REMARK 465 ILE C 287 REMARK 465 SER C 369 REMARK 465 ALA C 370 REMARK 465 VAL C 371 REMARK 465 LEU C 460 REMARK 465 GLY D 266 REMARK 465 ALA D 267 REMARK 465 ALA D 268 REMARK 465 SER D 269 REMARK 465 ASN D 270 REMARK 465 LYS D 271 REMARK 465 SER D 272 REMARK 465 THR D 273 REMARK 465 SER D 274 REMARK 465 SER D 275 REMARK 465 ALA D 276 REMARK 465 MET D 277 REMARK 465 SER D 278 REMARK 465 GLY D 279 REMARK 465 SER D 280 REMARK 465 HIS D 281 REMARK 465 GLN D 282 REMARK 465 ASP D 283 REMARK 465 LEU D 284 REMARK 465 SER D 285 REMARK 465 LEU D 360 REMARK 465 GLN D 361 REMARK 465 PRO D 362 REMARK 465 ILE D 363 REMARK 465 ARG D 364 REMARK 465 PHE D 365 REMARK 465 VAL D 366 REMARK 465 LYS D 367 REMARK 465 ALA D 368 REMARK 465 SER D 369 REMARK 465 ALA D 370 REMARK 465 VAL D 371 REMARK 465 GLU D 372 REMARK 465 CYS D 373 REMARK 465 GLY D 374 REMARK 465 GLY D 375 REMARK 465 PRO D 376 REMARK 465 LYS D 377 REMARK 465 LYS D 378 REMARK 465 CYS D 379 REMARK 465 ALA D 380 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 CG OD1 OD2 REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 TYR A 10 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 33 NE CZ NH1 NH2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 ASP A 56 CG OD1 OD2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 SER A 78 OG REMARK 470 ARG A 82 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 TYR A 173 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 176 CG1 CG2 REMARK 470 GLN A 178 CG CD OE1 NE2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 TYR B 10 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 LEU B 70 CG CD1 CD2 REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 82 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 470 ARG B 104 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 SER B 158 OG REMARK 470 ILE B 175 CG1 CG2 CD1 REMARK 470 SER B 177 OG REMARK 470 GLN B 178 CG CD OE1 NE2 REMARK 470 GLN C 288 CG CD OE1 NE2 REMARK 470 ILE C 290 CG1 CG2 CD1 REMARK 470 VAL C 291 CG1 CG2 REMARK 470 LYS C 292 CG CD CE NZ REMARK 470 LYS C 337 CG CD CE NZ REMARK 470 ILE C 363 CG1 CG2 CD1 REMARK 470 ARG C 364 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 365 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 367 CG CD CE NZ REMARK 470 LYS C 386 CG CD CE NZ REMARK 470 LYS C 389 CG CD CE NZ REMARK 470 LYS C 430 CG CD CE NZ REMARK 470 GLN C 431 CG CD OE1 NE2 REMARK 470 LYS C 457 CG CD CE NZ REMARK 470 GLU C 459 CG CD OE1 OE2 REMARK 470 GLN D 288 CG CD OE1 NE2 REMARK 470 ILE D 290 CG1 CG2 CD1 REMARK 470 VAL D 291 CG1 CG2 REMARK 470 LYS D 292 CG CD CE NZ REMARK 470 ARG D 306 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 337 CG CD CE NZ REMARK 470 GLU D 346 CG CD OE1 OE2 REMARK 470 LEU D 381 CG CD1 CD2 REMARK 470 GLN D 384 CG CD OE1 NE2 REMARK 470 SER D 385 OG REMARK 470 LYS D 386 CG CD CE NZ REMARK 470 SER D 387 OG REMARK 470 ARG D 391 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 393 CG CD CE NZ REMARK 470 ASP D 396 CG OD1 OD2 REMARK 470 SER D 397 OG REMARK 470 LYS D 430 CG CD CE NZ REMARK 470 GLN D 431 CG CD OE1 NE2 REMARK 470 GLU D 458 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 158 -4.31 74.68 REMARK 500 ASP B 9 -60.37 -109.39 REMARK 500 GLU B 71 41.92 -100.35 REMARK 500 SER B 158 -1.99 74.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D2005 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH D2006 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH D2030 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH D2031 DISTANCE = 8.17 ANGSTROMS REMARK 525 HOH D2032 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH D2033 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH D2034 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH D2035 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH D2036 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH D2037 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH D2038 DISTANCE = 6.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 25 OG REMARK 620 2 THR A 43 OG1 86.8 REMARK 620 3 GNP A 201 O3G 169.4 94.1 REMARK 620 4 GNP A 201 O2B 93.4 173.5 86.9 REMARK 620 5 HOH A2006 O 91.7 98.9 98.6 74.6 REMARK 620 6 HOH A2007 O 83.4 93.3 86.0 93.2 166.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 25 OG REMARK 620 2 THR B 43 OG1 77.6 REMARK 620 3 GNP B 201 O2B 93.8 155.1 REMARK 620 4 GNP B 201 O3G 154.3 82.4 97.7 REMARK 620 5 HOH B2006 O 73.2 81.3 73.9 88.1 REMARK 620 6 HOH B2007 O 119.3 87.6 116.7 75.3 161.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UJ3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN RAB11-RABIN8-FIP3 REMARK 900 RELATED ID: 4UJ4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN RAB11-RABIN8-FIP3 REMARK 999 REMARK 999 SEQUENCE REMARK 999 Q70L POINT MUTATION DBREF 4UJ5 A 6 186 UNP P62491 RB11A_HUMAN 6 186 DBREF 4UJ5 B 6 186 UNP P62491 RB11A_HUMAN 6 186 DBREF 4UJ5 C 270 460 UNP Q96QF0 RAB3I_HUMAN 286 476 DBREF 4UJ5 D 270 460 UNP Q96QF0 RAB3I_HUMAN 286 476 SEQADV 4UJ5 GLY A 2 UNP P62491 EXPRESSION TAG SEQADV 4UJ5 ALA A 3 UNP P62491 EXPRESSION TAG SEQADV 4UJ5 ALA A 4 UNP P62491 EXPRESSION TAG SEQADV 4UJ5 SER A 5 UNP P62491 EXPRESSION TAG SEQADV 4UJ5 LEU A 70 UNP P62491 GLN 70 ENGINEERED MUTATION SEQADV 4UJ5 GLY B 2 UNP P62491 EXPRESSION TAG SEQADV 4UJ5 ALA B 3 UNP P62491 EXPRESSION TAG SEQADV 4UJ5 ALA B 4 UNP P62491 EXPRESSION TAG SEQADV 4UJ5 SER B 5 UNP P62491 EXPRESSION TAG SEQADV 4UJ5 LEU B 70 UNP P62491 GLN 70 ENGINEERED MUTATION SEQADV 4UJ5 GLY C 266 UNP Q96QF0 EXPRESSION TAG SEQADV 4UJ5 ALA C 267 UNP Q96QF0 EXPRESSION TAG SEQADV 4UJ5 ALA C 268 UNP Q96QF0 EXPRESSION TAG SEQADV 4UJ5 SER C 269 UNP Q96QF0 EXPRESSION TAG SEQADV 4UJ5 GLY D 266 UNP Q96QF0 EXPRESSION TAG SEQADV 4UJ5 ALA D 267 UNP Q96QF0 EXPRESSION TAG SEQADV 4UJ5 ALA D 268 UNP Q96QF0 EXPRESSION TAG SEQADV 4UJ5 SER D 269 UNP Q96QF0 EXPRESSION TAG SEQRES 1 A 185 GLY ALA ALA SER ASP GLU TYR ASP TYR LEU PHE LYS VAL SEQRES 2 A 185 VAL LEU ILE GLY ASP SER GLY VAL GLY LYS SER ASN LEU SEQRES 3 A 185 LEU SER ARG PHE THR ARG ASN GLU PHE ASN LEU GLU SER SEQRES 4 A 185 LYS SER THR ILE GLY VAL GLU PHE ALA THR ARG SER ILE SEQRES 5 A 185 GLN VAL ASP GLY LYS THR ILE LYS ALA GLN ILE TRP ASP SEQRES 6 A 185 THR ALA GLY LEU GLU ARG TYR ARG ALA ILE THR SER ALA SEQRES 7 A 185 TYR TYR ARG GLY ALA VAL GLY ALA LEU LEU VAL TYR ASP SEQRES 8 A 185 ILE ALA LYS HIS LEU THR TYR GLU ASN VAL GLU ARG TRP SEQRES 9 A 185 LEU LYS GLU LEU ARG ASP HIS ALA ASP SER ASN ILE VAL SEQRES 10 A 185 ILE MET LEU VAL GLY ASN LYS SER ASP LEU ARG HIS LEU SEQRES 11 A 185 ARG ALA VAL PRO THR ASP GLU ALA ARG ALA PHE ALA GLU SEQRES 12 A 185 LYS ASN GLY LEU SER PHE ILE GLU THR SER ALA LEU ASP SEQRES 13 A 185 SER THR ASN VAL GLU ALA ALA PHE GLN THR ILE LEU THR SEQRES 14 A 185 GLU ILE TYR ARG ILE VAL SER GLN LYS GLN MET SER ASP SEQRES 15 A 185 ARG ARG GLU SEQRES 1 B 185 GLY ALA ALA SER ASP GLU TYR ASP TYR LEU PHE LYS VAL SEQRES 2 B 185 VAL LEU ILE GLY ASP SER GLY VAL GLY LYS SER ASN LEU SEQRES 3 B 185 LEU SER ARG PHE THR ARG ASN GLU PHE ASN LEU GLU SER SEQRES 4 B 185 LYS SER THR ILE GLY VAL GLU PHE ALA THR ARG SER ILE SEQRES 5 B 185 GLN VAL ASP GLY LYS THR ILE LYS ALA GLN ILE TRP ASP SEQRES 6 B 185 THR ALA GLY LEU GLU ARG TYR ARG ALA ILE THR SER ALA SEQRES 7 B 185 TYR TYR ARG GLY ALA VAL GLY ALA LEU LEU VAL TYR ASP SEQRES 8 B 185 ILE ALA LYS HIS LEU THR TYR GLU ASN VAL GLU ARG TRP SEQRES 9 B 185 LEU LYS GLU LEU ARG ASP HIS ALA ASP SER ASN ILE VAL SEQRES 10 B 185 ILE MET LEU VAL GLY ASN LYS SER ASP LEU ARG HIS LEU SEQRES 11 B 185 ARG ALA VAL PRO THR ASP GLU ALA ARG ALA PHE ALA GLU SEQRES 12 B 185 LYS ASN GLY LEU SER PHE ILE GLU THR SER ALA LEU ASP SEQRES 13 B 185 SER THR ASN VAL GLU ALA ALA PHE GLN THR ILE LEU THR SEQRES 14 B 185 GLU ILE TYR ARG ILE VAL SER GLN LYS GLN MET SER ASP SEQRES 15 B 185 ARG ARG GLU SEQRES 1 C 195 GLY ALA ALA SER ASN LYS SER THR SER SER ALA MET SER SEQRES 2 C 195 GLY SER HIS GLN ASP LEU SER VAL ILE GLN PRO ILE VAL SEQRES 3 C 195 LYS ASP CYS LYS GLU ALA ASP LEU SER LEU TYR ASN GLU SEQRES 4 C 195 PHE ARG LEU TRP LYS ASP GLU PRO THR MET ASP ARG THR SEQRES 5 C 195 CYS PRO PHE LEU ASP LYS ILE TYR GLN GLU ASP ILE PHE SEQRES 6 C 195 PRO CYS LEU THR PHE SER LYS SER GLU LEU ALA SER ALA SEQRES 7 C 195 VAL LEU GLU ALA VAL GLU ASN ASN THR LEU SER ILE GLU SEQRES 8 C 195 PRO VAL GLY LEU GLN PRO ILE ARG PHE VAL LYS ALA SER SEQRES 9 C 195 ALA VAL GLU CYS GLY GLY PRO LYS LYS CYS ALA LEU THR SEQRES 10 C 195 GLY GLN SER LYS SER CYS LYS HIS ARG ILE LYS LEU GLY SEQRES 11 C 195 ASP SER SER ASN TYR TYR TYR ILE SER PRO PHE CYS ARG SEQRES 12 C 195 TYR ARG ILE THR SER VAL CYS ASN PHE PHE THR TYR ILE SEQRES 13 C 195 ARG TYR ILE GLN GLN GLY LEU VAL LYS GLN GLN ASP VAL SEQRES 14 C 195 ASP GLN MET PHE TRP GLU VAL MET GLN LEU ARG LYS GLU SEQRES 15 C 195 MET SER LEU ALA LYS LEU GLY TYR PHE LYS GLU GLU LEU SEQRES 1 D 195 GLY ALA ALA SER ASN LYS SER THR SER SER ALA MET SER SEQRES 2 D 195 GLY SER HIS GLN ASP LEU SER VAL ILE GLN PRO ILE VAL SEQRES 3 D 195 LYS ASP CYS LYS GLU ALA ASP LEU SER LEU TYR ASN GLU SEQRES 4 D 195 PHE ARG LEU TRP LYS ASP GLU PRO THR MET ASP ARG THR SEQRES 5 D 195 CYS PRO PHE LEU ASP LYS ILE TYR GLN GLU ASP ILE PHE SEQRES 6 D 195 PRO CYS LEU THR PHE SER LYS SER GLU LEU ALA SER ALA SEQRES 7 D 195 VAL LEU GLU ALA VAL GLU ASN ASN THR LEU SER ILE GLU SEQRES 8 D 195 PRO VAL GLY LEU GLN PRO ILE ARG PHE VAL LYS ALA SER SEQRES 9 D 195 ALA VAL GLU CYS GLY GLY PRO LYS LYS CYS ALA LEU THR SEQRES 10 D 195 GLY GLN SER LYS SER CYS LYS HIS ARG ILE LYS LEU GLY SEQRES 11 D 195 ASP SER SER ASN TYR TYR TYR ILE SER PRO PHE CYS ARG SEQRES 12 D 195 TYR ARG ILE THR SER VAL CYS ASN PHE PHE THR TYR ILE SEQRES 13 D 195 ARG TYR ILE GLN GLN GLY LEU VAL LYS GLN GLN ASP VAL SEQRES 14 D 195 ASP GLN MET PHE TRP GLU VAL MET GLN LEU ARG LYS GLU SEQRES 15 D 195 MET SER LEU ALA LYS LEU GLY TYR PHE LYS GLU GLU LEU HET GNP A 201 32 HET MG A 202 1 HET SO4 A 203 5 HET GNP B 201 32 HET MG B 202 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 5 GNP 2(C10 H17 N6 O13 P3) FORMUL 6 MG 2(MG 2+) FORMUL 7 SO4 O4 S 2- FORMUL 10 HOH *159(H2 O) HELIX 1 1 GLY A 23 ARG A 33 1 11 HELIX 2 2 THR A 77 ARG A 82 1 6 HELIX 3 3 LYS A 95 ASN A 101 1 7 HELIX 4 4 ASN A 101 HIS A 112 1 12 HELIX 5 5 PRO A 135 ASN A 146 1 12 HELIX 6 6 ASN A 160 GLN A 178 1 19 HELIX 7 7 GLY B 23 ARG B 33 1 11 HELIX 8 8 LYS B 95 ASN B 101 1 7 HELIX 9 9 ASN B 101 HIS B 112 1 12 HELIX 10 10 PRO B 135 ASN B 146 1 12 HELIX 11 11 ASN B 160 ILE B 175 1 16 HELIX 12 12 ASP C 298 ASP C 310 1 13 HELIX 13 13 CYS C 318 ASP C 328 1 11 HELIX 14 14 ASP C 328 LEU C 333 1 6 HELIX 15 15 LYS C 337 ASN C 350 1 14 HELIX 16 16 SER C 404 GLN C 426 1 23 HELIX 17 17 ASP C 433 LEU C 453 1 21 HELIX 18 18 ASP D 298 ASP D 310 1 13 HELIX 19 19 CYS D 318 ASP D 328 1 11 HELIX 20 20 ASP D 328 LEU D 333 1 6 HELIX 21 21 LYS D 337 ASN D 350 1 14 HELIX 22 22 SER D 404 GLN D 426 1 23 HELIX 23 23 ASP D 433 LEU D 453 1 21 SHEET 1 AA 6 VAL A 46 VAL A 55 0 SHEET 2 AA 6 LYS A 58 THR A 67 -1 O LYS A 58 N VAL A 55 SHEET 3 AA 6 TYR A 10 GLY A 18 1 O TYR A 10 N LYS A 61 SHEET 4 AA 6 GLY A 86 ASP A 92 1 O GLY A 86 N VAL A 15 SHEET 5 AA 6 VAL A 118 ASN A 124 1 O VAL A 118 N ALA A 87 SHEET 6 AA 6 SER A 149 GLU A 152 1 O SER A 149 N LEU A 121 SHEET 1 BA 6 VAL B 46 VAL B 55 0 SHEET 2 BA 6 LYS B 58 THR B 67 -1 O LYS B 58 N VAL B 55 SHEET 3 BA 6 TYR B 10 ILE B 17 1 O TYR B 10 N LYS B 61 SHEET 4 BA 6 GLY B 86 ASP B 92 1 O GLY B 86 N VAL B 15 SHEET 5 BA 6 VAL B 118 ASN B 124 1 O VAL B 118 N ALA B 87 SHEET 6 BA 6 SER B 149 GLU B 152 1 O SER B 149 N LEU B 121 SHEET 1 CA 3 SER C 354 PRO C 357 0 SHEET 2 CA 3 HIS C 390 LYS C 393 -1 O ARG C 391 N GLU C 356 SHEET 3 CA 3 TYR C 400 ILE C 403 -1 O TYR C 401 N ILE C 392 SHEET 1 DA 3 SER D 354 PRO D 357 0 SHEET 2 DA 3 HIS D 390 LYS D 393 -1 O ARG D 391 N GLU D 356 SHEET 3 DA 3 TYR D 400 ILE D 403 -1 O TYR D 401 N ILE D 392 LINK OG SER A 25 MG MG A 202 1555 1555 2.14 LINK OG1 THR A 43 MG MG A 202 1555 1555 2.04 LINK O3G GNP A 201 MG MG A 202 1555 1555 1.95 LINK O2B GNP A 201 MG MG A 202 1555 1555 1.95 LINK MG MG A 202 O HOH A2006 1555 1555 2.28 LINK MG MG A 202 O HOH A2007 1555 1555 2.24 LINK OG SER B 25 MG MG B 202 1555 1555 1.94 LINK OG1 THR B 43 MG MG B 202 1555 1555 2.58 LINK O2B GNP B 201 MG MG B 202 1555 1555 2.50 LINK O3G GNP B 201 MG MG B 202 1555 1555 2.52 LINK MG MG B 202 O HOH B2006 1555 1555 2.27 LINK MG MG B 202 O HOH B2007 1555 1555 2.04 CISPEP 1 VAL A 122 GLY A 123 0 9.59 CISPEP 2 ASP C 396 SER C 397 0 14.75 SITE 1 AC1 27 SER A 20 GLY A 21 VAL A 22 GLY A 23 SITE 2 AC1 27 LYS A 24 SER A 25 ASN A 26 PHE A 36 SITE 3 AC1 27 ASN A 37 LEU A 38 SER A 40 SER A 42 SITE 4 AC1 27 THR A 43 ALA A 68 GLY A 69 ASN A 124 SITE 5 AC1 27 LYS A 125 ASP A 127 LEU A 128 SER A 154 SITE 6 AC1 27 ALA A 155 LEU A 156 MG A 202 HOH A2006 SITE 7 AC1 27 HOH A2007 HOH A2027 TYR C 423 SITE 1 AC2 6 SER A 25 THR A 43 ASP A 66 GNP A 201 SITE 2 AC2 6 HOH A2006 HOH A2007 SITE 1 AC3 4 ASP A 92 ALA A 94 LYS A 95 LYS A 125 SITE 1 AC4 27 SER B 20 GLY B 21 VAL B 22 GLY B 23 SITE 2 AC4 27 LYS B 24 SER B 25 ASN B 26 PHE B 36 SITE 3 AC4 27 ASN B 37 LEU B 38 SER B 40 SER B 42 SITE 4 AC4 27 THR B 43 THR B 67 ALA B 68 GLY B 69 SITE 5 AC4 27 ASN B 124 LYS B 125 ASP B 127 LEU B 128 SITE 6 AC4 27 SER B 154 ALA B 155 LEU B 156 MG B 202 SITE 7 AC4 27 HOH B2006 HOH B2007 TYR D 423 SITE 1 AC5 5 SER B 25 THR B 43 GNP B 201 HOH B2006 SITE 2 AC5 5 HOH B2007 CRYST1 51.683 108.202 75.736 90.00 102.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019349 0.000000 0.004407 0.00000 SCALE2 0.000000 0.009242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013542 0.00000