HEADER TRANSFERASE 09-APR-15 4UJ9 TITLE PROTEIN KINASE A IN COMPLEX WITH AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 1-351; COMPND 5 SYNONYM: PKA C-ALPHA; COMPND 6 EC: 2.7.11.11; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: PKI-ALPHA,CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, COMPND 12 MUSCLE/BRAIN ISOFORM; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKACA, PKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS TRANSFERASE, PKA EXPDTA X-RAY DIFFRACTION AUTHOR K.A.ALAM,R.A.ENGH REVDAT 5 31-JAN-24 4UJ9 1 REMARK REVDAT 4 07-DEC-22 4UJ9 1 COMPND SOURCE REMARK DBREF REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 06-FEB-19 4UJ9 1 REMARK REVDAT 2 30-JAN-19 4UJ9 1 REMARK REVDAT 1 13-APR-16 4UJ9 0 JRNL AUTH B.S.LAUBER,L.A.HARDEGGER,A.K.ASRAFUL,B.A.LUND,O.DUMELE, JRNL AUTH 2 M.HARDER,B.KUHN,R.A.ENGH,F.DIEDERICH JRNL TITL ADDRESSING THE GLYCINE-RICH LOOP OF PROTEIN KINASES BY A JRNL TITL 2 MULTI-FACETTED INTERACTION NETWORK: INHIBITION OF PKA AND A JRNL TITL 3 PKB MIMIC. JRNL REF CHEMISTRY V. 22 211 2016 JRNL REFN ISSN 0947-6539 JRNL PMID 26578105 JRNL DOI 10.1002/CHEM.201503552 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 36787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8233 - 4.3957 0.99 2884 125 0.1529 0.1749 REMARK 3 2 4.3957 - 3.4895 1.00 2755 150 0.1299 0.1765 REMARK 3 3 3.4895 - 3.0485 1.00 2739 147 0.1473 0.2085 REMARK 3 4 3.0485 - 2.7698 1.00 2694 146 0.1582 0.2019 REMARK 3 5 2.7698 - 2.5713 1.00 2723 134 0.1635 0.2171 REMARK 3 6 2.5713 - 2.4197 1.00 2695 141 0.1560 0.1733 REMARK 3 7 2.4197 - 2.2986 1.00 2684 150 0.1566 0.1891 REMARK 3 8 2.2986 - 2.1985 1.00 2658 148 0.1602 0.1940 REMARK 3 9 2.1985 - 2.1139 1.00 2720 115 0.1806 0.2238 REMARK 3 10 2.1139 - 2.0409 1.00 2676 144 0.2017 0.2822 REMARK 3 11 2.0409 - 1.9771 1.00 2653 132 0.2587 0.2708 REMARK 3 12 1.9771 - 1.9206 1.00 2659 155 0.3039 0.3436 REMARK 3 13 1.9206 - 1.8700 0.91 2410 150 0.3047 0.3408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 3066 REMARK 3 ANGLE : 1.706 4144 REMARK 3 CHIRALITY : 0.123 435 REMARK 3 PLANARITY : 0.009 524 REMARK 3 DIHEDRAL : 15.621 1150 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2873 -2.9319 17.5312 REMARK 3 T TENSOR REMARK 3 T11: 0.3105 T22: 0.3929 REMARK 3 T33: 0.3092 T12: 0.0956 REMARK 3 T13: -0.0819 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 1.1025 L22: 1.0734 REMARK 3 L33: 0.2584 L12: 0.1478 REMARK 3 L13: -0.5298 L23: -0.0102 REMARK 3 S TENSOR REMARK 3 S11: -0.1267 S12: -0.3755 S13: -0.0665 REMARK 3 S21: 0.5725 S22: 0.0279 S23: -0.5175 REMARK 3 S31: 0.4416 S32: 0.5591 S33: 0.0317 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8835 19.8668 0.7603 REMARK 3 T TENSOR REMARK 3 T11: 0.0845 T22: 0.1805 REMARK 3 T33: 0.1748 T12: -0.0246 REMARK 3 T13: -0.0037 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.5455 L22: 0.7547 REMARK 3 L33: 0.6927 L12: 0.2387 REMARK 3 L13: -0.0366 L23: 0.3060 REMARK 3 S TENSOR REMARK 3 S11: -0.0507 S12: 0.0564 S13: 0.0948 REMARK 3 S21: -0.0633 S22: 0.0247 S23: -0.0822 REMARK 3 S31: -0.1978 S32: 0.1295 S33: -0.1459 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3817 4.3921 2.1681 REMARK 3 T TENSOR REMARK 3 T11: 0.1178 T22: 0.1667 REMARK 3 T33: 0.1433 T12: 0.0027 REMARK 3 T13: 0.0020 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.4388 L22: 0.9457 REMARK 3 L33: 0.9633 L12: 0.1503 REMARK 3 L13: -0.0153 L23: 0.2505 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: 0.0226 S13: 0.0333 REMARK 3 S21: -0.0501 S22: 0.0214 S23: -0.1455 REMARK 3 S31: 0.0594 S32: 0.1644 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8813 -3.2988 3.2946 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.1403 REMARK 3 T33: 0.1210 T12: -0.0066 REMARK 3 T13: 0.0038 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.7479 L22: 1.1552 REMARK 3 L33: 1.6944 L12: 0.0992 REMARK 3 L13: -0.0923 L23: 0.6887 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: -0.0277 S13: -0.0513 REMARK 3 S21: 0.0345 S22: -0.0683 S23: 0.1145 REMARK 3 S31: 0.1918 S32: -0.1500 S33: -0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3462 -15.5975 0.8759 REMARK 3 T TENSOR REMARK 3 T11: 0.3580 T22: 0.1606 REMARK 3 T33: 0.2136 T12: 0.0537 REMARK 3 T13: 0.0034 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.3826 L22: 1.1912 REMARK 3 L33: 1.2567 L12: -0.0279 REMARK 3 L13: 0.1086 L23: 0.2293 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: -0.0932 S13: -0.4305 REMARK 3 S21: -0.0159 S22: -0.0293 S23: -0.0948 REMARK 3 S31: 0.5943 S32: 0.0677 S33: 0.0805 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3227 20.6078 -0.8544 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.2086 REMARK 3 T33: 0.1972 T12: 0.0238 REMARK 3 T13: -0.0417 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 0.7488 L22: 1.4007 REMARK 3 L33: 0.4532 L12: 0.7713 REMARK 3 L13: -0.2011 L23: 0.1027 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: 0.0841 S13: 0.1596 REMARK 3 S21: -0.0506 S22: 0.0494 S23: 0.1235 REMARK 3 S31: -0.2026 S32: -0.0279 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9423 -8.2008 -16.1187 REMARK 3 T TENSOR REMARK 3 T11: 0.2012 T22: 0.2450 REMARK 3 T33: 0.1998 T12: -0.0188 REMARK 3 T13: 0.0082 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.0163 L22: 0.0542 REMARK 3 L33: 0.0467 L12: -0.0124 REMARK 3 L13: 0.0237 L23: 0.0067 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.2667 S13: -0.0806 REMARK 3 S21: 0.1436 S22: -0.2543 S23: -0.2664 REMARK 3 S31: 0.1804 S32: -0.0043 S33: 0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8847 3.5500 -4.2835 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 0.1909 REMARK 3 T33: 0.1643 T12: -0.0064 REMARK 3 T13: -0.0210 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.4516 L22: 0.3642 REMARK 3 L33: 0.3474 L12: -0.0621 REMARK 3 L13: 0.3246 L23: -0.1265 REMARK 3 S TENSOR REMARK 3 S11: -0.2230 S12: -0.0212 S13: 0.1171 REMARK 3 S21: 0.0853 S22: 0.0690 S23: 0.2091 REMARK 3 S31: -0.4492 S32: -0.3385 S33: -0.0439 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UJ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-15. REMARK 100 THE DEPOSITION ID IS D_1290063568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 70 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36790 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 43.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3VQH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML PROTEIN, 25MM BISTRIS/MES REMARK 280 PH6.9, 50MM KCL, 1.5MM OCTANOYL-N-METHYLGLUCAMIDE, 1MM PROTEIN REMARK 280 KINASE INHIBITOR PEPTIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.35050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.15700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.60800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.15700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.35050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.60800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2066 O HOH A 2140 1.81 REMARK 500 O HOH A 2215 O HOH A 2379 1.88 REMARK 500 O HOH A 2308 O HOH A 2357 1.94 REMARK 500 O HOH A 2273 O HOH A 2275 1.97 REMARK 500 NZ LYS A 192 O HOH A 2286 2.03 REMARK 500 OE1 GLU A 24 O HOH A 2033 2.04 REMARK 500 O HOH A 2258 O HOH A 2283 2.07 REMARK 500 O HOH A 2048 O HOH A 2115 2.11 REMARK 500 O HOH A 2284 O HOH A 2306 2.11 REMARK 500 O HOH A 2114 O HOH A 2115 2.15 REMARK 500 O HOH A 2027 O HOH A 2192 2.17 REMARK 500 OE2 GLU A 31 O HOH A 2051 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2232 O HOH A 2337 2555 2.06 REMARK 500 O HOH A 2331 O HOH A 2376 4445 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 198 N - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 99 106.26 -161.96 REMARK 500 ASP A 166 43.95 -149.55 REMARK 500 ASP A 184 71.43 58.79 REMARK 500 ASN A 216 -154.19 -148.08 REMARK 500 LEU A 273 49.86 -86.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2081 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A2203 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A2425 DISTANCE = 6.75 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 PHOSPHOSERINE (SEP): PHOSPHORYLATION REMARK 600 PHOSPHOTHREONINE (TPO): PHOSPHORYLATION REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S3N A 1351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1353 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UJ1 RELATED DB: PDB REMARK 900 PKA INHIBITOR COMPLEX REMARK 900 RELATED ID: 4UJ2 RELATED DB: PDB REMARK 900 PKA INHIBITOR COMPLEX REMARK 900 RELATED ID: 4UJA RELATED DB: PDB REMARK 900 PROTEIN KINASE A IN COMPLEX WITH AN INHIBITOR REMARK 900 RELATED ID: 4UJB RELATED DB: PDB REMARK 900 PROTEIN KINASE A IN COMPLEX WITH AN INHIBITOR DBREF 4UJ9 A 0 350 UNP P17612 KAPCA_HUMAN 1 351 DBREF 4UJ9 B 5 24 UNP P61925 IPKA_HUMAN 6 25 SEQRES 1 A 351 MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN SEQRES 2 A 351 GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP SEQRES 3 A 351 PHE LEU LYS LYS TRP GLU SER PRO ALA GLN ASN THR ALA SEQRES 4 A 351 HIS LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR SEQRES 5 A 351 GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SEQRES 6 A 351 THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN SEQRES 7 A 351 LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN SEQRES 8 A 351 GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU SEQRES 9 A 351 VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU SEQRES 10 A 351 TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU MET PHE SEQRES 11 A 351 SER HIS LEU ARG ARG ILE GLY ARG PHE SER GLU PRO HIS SEQRES 12 A 351 ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU SEQRES 13 A 351 TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS SEQRES 14 A 351 PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN SEQRES 15 A 351 VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG SEQRES 16 A 351 THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO SEQRES 17 A 351 GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP SEQRES 18 A 351 TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA SEQRES 19 A 351 GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE SEQRES 20 A 351 TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER SEQRES 21 A 351 HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU SEQRES 22 A 351 LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS SEQRES 23 A 351 ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA SEQRES 24 A 351 THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU SEQRES 25 A 351 ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SEQRES 26 A 351 SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEQRES 27 A 351 SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE SEQRES 1 B 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 B 20 ARG ARG ASN ALA ILE HIS ASP MODRES 4UJ9 TPO A 197 THR MODIFIED RESIDUE MODRES 4UJ9 SEP A 338 SER MODIFIED RESIDUE HET TPO A 197 11 HET SEP A 338 10 HET S3N A1351 44 HET MPD A1352 22 HET MPD A1353 22 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM S3N 7-[(3S,4R)-4-[4-(TRIFLUOROMETHYL) HETNAM 2 S3N PHENYL]CARBONYLPYRROLIDIN-3-YL]-3H-QUINAZOLIN-4-ONE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 SEP C3 H8 N O6 P FORMUL 3 S3N C20 H16 F3 N3 O2 FORMUL 4 MPD 2(C6 H14 O2) FORMUL 6 HOH *455(H2 O) HELIX 1 1 SER A 10 SER A 32 1 23 HELIX 2 2 HIS A 39 ASP A 41 5 3 HELIX 3 3 LYS A 76 LEU A 82 1 7 HELIX 4 4 GLN A 84 GLN A 96 1 13 HELIX 5 5 GLU A 127 GLY A 136 1 10 HELIX 6 6 SER A 139 LEU A 160 1 22 HELIX 7 7 LYS A 168 GLU A 170 5 3 HELIX 8 8 THR A 201 LEU A 205 5 5 HELIX 9 9 ALA A 206 LEU A 211 1 6 HELIX 10 10 LYS A 217 GLY A 234 1 18 HELIX 11 11 GLN A 242 GLY A 253 1 12 HELIX 12 12 SER A 262 LEU A 273 1 12 HELIX 13 13 VAL A 288 ASN A 293 1 6 HELIX 14 14 HIS A 294 ALA A 298 5 5 HELIX 15 15 ASP A 301 GLN A 307 1 7 HELIX 16 16 THR B 5 SER B 13 1 9 SHEET 1 AA 5 PHE A 43 GLY A 52 0 SHEET 2 AA 5 GLY A 55 HIS A 62 -1 O GLY A 55 N GLY A 52 SHEET 3 AA 5 HIS A 68 ASP A 75 -1 O TYR A 69 N VAL A 60 SHEET 4 AA 5 ASN A 115 GLU A 121 -1 O LEU A 116 N LEU A 74 SHEET 5 AA 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AB 2 LEU A 162 ILE A 163 0 SHEET 2 AB 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AC 2 LEU A 172 ILE A 174 0 SHEET 2 AC 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 SHEET 1 AD 2 CYS A 199 GLY A 200 0 SHEET 2 AD 2 ILE B 22 HIS B 23 -1 O ILE B 22 N GLY A 200 LINK C TRP A 196 N TPO A 197 1555 1555 1.70 LINK C TPO A 197 N LEU A 198 1555 1555 2.14 LINK C VAL A 337 N SEP A 338 1555 1555 1.32 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 SITE 1 AC1 24 GLY A 50 THR A 51 GLY A 52 SER A 53 SITE 2 AC1 24 PHE A 54 GLY A 55 VAL A 57 ALA A 70 SITE 3 AC1 24 LYS A 72 LEU A 74 VAL A 104 MET A 120 SITE 4 AC1 24 GLU A 121 TYR A 122 VAL A 123 GLU A 127 SITE 5 AC1 24 GLU A 170 ASN A 171 LEU A 173 THR A 183 SITE 6 AC1 24 ASP A 184 HOH A2138 HOH A2217 HOH A2227 SITE 1 AC2 4 SER A 130 ARG A 134 ASN A 326 PHE A 327 SITE 1 AC3 3 VAL A 15 GLU A 155 TYR A 306 CRYST1 72.701 75.216 80.314 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012451 0.00000