HEADER TRANSFERASE 09-APR-15 4UJA TITLE PROTEIN KINASE A IN COMPLEX WITH AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 1-351; COMPND 5 SYNONYM: PKA C-ALPHA, PKA; COMPND 6 EC: 2.7.11.11; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEPTIDE; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.A.ALAM,R.A.ENGH REVDAT 5 16-OCT-24 4UJA 1 REMARK REVDAT 4 10-JAN-24 4UJA 1 REMARK LINK REVDAT 3 06-FEB-19 4UJA 1 REMARK REVDAT 2 30-JAN-19 4UJA 1 REMARK REVDAT 1 13-APR-16 4UJA 0 JRNL AUTH B.S.LAUBER,L.A.HARDEGGER,A.K.ASRAFUL,B.A.LUND,O.DUMELE, JRNL AUTH 2 M.HARDER,B.KUHN,R.A.ENGH,F.DIEDERICH JRNL TITL ADDRESSING THE GLYCINE-RICH LOOP OF PROTEIN KINASES BY A JRNL TITL 2 MULTI-FACETTED INTERACTION NETWORK: INHIBITION OF PKA AND A JRNL TITL 3 PKB MIMIC. JRNL REF CHEMISTRY V. 22 211 2016 JRNL REFN ISSN 0947-6539 JRNL PMID 26578105 JRNL DOI 10.1002/CHEM.201503552 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 30034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6184 - 4.2911 0.83 2534 144 0.1494 0.1883 REMARK 3 2 4.2911 - 3.4064 0.88 2554 143 0.1419 0.1523 REMARK 3 3 3.4064 - 2.9759 0.89 2565 124 0.1555 0.2097 REMARK 3 4 2.9759 - 2.7039 0.90 2602 142 0.1675 0.2483 REMARK 3 5 2.7039 - 2.5101 0.90 2558 140 0.1749 0.2170 REMARK 3 6 2.5101 - 2.3621 0.92 2622 142 0.1656 0.2066 REMARK 3 7 2.3621 - 2.2438 0.92 2610 143 0.1667 0.2196 REMARK 3 8 2.2438 - 2.1461 0.91 2579 132 0.1822 0.2402 REMARK 3 9 2.1461 - 2.0635 0.93 2628 141 0.1857 0.2290 REMARK 3 10 2.0635 - 1.9923 0.93 2623 159 0.2099 0.2541 REMARK 3 11 1.9923 - 1.9300 0.92 2616 133 0.2426 0.3076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.030 3047 REMARK 3 ANGLE : 1.249 4121 REMARK 3 CHIRALITY : 0.043 433 REMARK 3 PLANARITY : 0.008 545 REMARK 3 DIHEDRAL : 14.055 1145 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.7807 -1.2532 -17.6424 REMARK 3 T TENSOR REMARK 3 T11: 0.2927 T22: 0.3927 REMARK 3 T33: 0.2952 T12: -0.0853 REMARK 3 T13: -0.1097 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 1.2698 L22: 1.1070 REMARK 3 L33: 0.4035 L12: -0.1998 REMARK 3 L13: -0.5396 L23: 0.5172 REMARK 3 S TENSOR REMARK 3 S11: 0.0975 S12: 0.1978 S13: -0.1381 REMARK 3 S21: -0.4128 S22: -0.0099 S23: 0.5087 REMARK 3 S31: 0.3598 S32: -0.4966 S33: 0.1798 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9000 20.4097 -1.6600 REMARK 3 T TENSOR REMARK 3 T11: 0.1321 T22: 0.2239 REMARK 3 T33: 0.2283 T12: 0.0586 REMARK 3 T13: -0.0203 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.5207 L22: 0.5073 REMARK 3 L33: 0.1798 L12: 0.2621 REMARK 3 L13: -0.0284 L23: -0.2726 REMARK 3 S TENSOR REMARK 3 S11: -0.0754 S12: -0.1581 S13: 0.0984 REMARK 3 S21: 0.1323 S22: -0.0114 S23: 0.1004 REMARK 3 S31: -0.2090 S32: -0.1201 S33: -0.0315 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2394 19.5609 0.0615 REMARK 3 T TENSOR REMARK 3 T11: 0.1195 T22: 0.2245 REMARK 3 T33: 0.2254 T12: 0.0112 REMARK 3 T13: 0.0107 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.1347 L22: 0.0577 REMARK 3 L33: 0.2480 L12: -0.0074 REMARK 3 L13: 0.1257 L23: -0.0924 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: 0.0179 S13: 0.3117 REMARK 3 S21: 0.0489 S22: 0.0537 S23: 0.0954 REMARK 3 S31: -0.1928 S32: -0.1711 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8485 11.9310 -9.2196 REMARK 3 T TENSOR REMARK 3 T11: 0.1515 T22: 0.2015 REMARK 3 T33: 0.2126 T12: 0.0083 REMARK 3 T13: -0.0186 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.1020 L22: 0.6779 REMARK 3 L33: 0.7790 L12: -0.1984 REMARK 3 L13: 0.0082 L23: 0.2519 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: 0.1389 S13: 0.0660 REMARK 3 S21: -0.0864 S22: -0.0336 S23: 0.0924 REMARK 3 S31: 0.0192 S32: -0.1957 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9110 4.7125 7.2145 REMARK 3 T TENSOR REMARK 3 T11: 0.1705 T22: 0.2319 REMARK 3 T33: 0.1946 T12: 0.0084 REMARK 3 T13: 0.0161 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.0337 L22: 0.2512 REMARK 3 L33: 0.2456 L12: 0.0276 REMARK 3 L13: -0.0827 L23: 0.0345 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: -0.1106 S13: 0.0451 REMARK 3 S21: 0.0369 S22: 0.0538 S23: 0.0876 REMARK 3 S31: 0.0877 S32: -0.1390 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8608 -3.5037 -4.5181 REMARK 3 T TENSOR REMARK 3 T11: 0.1778 T22: 0.1684 REMARK 3 T33: 0.1442 T12: -0.0082 REMARK 3 T13: 0.0189 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.5059 L22: 0.7376 REMARK 3 L33: 0.5717 L12: -0.0028 REMARK 3 L13: 0.2482 L23: -0.4134 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.0687 S13: -0.0693 REMARK 3 S21: -0.1034 S22: -0.0371 S23: 0.0231 REMARK 3 S31: 0.2536 S32: -0.0559 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4344 -13.1325 3.6450 REMARK 3 T TENSOR REMARK 3 T11: 0.3006 T22: 0.1560 REMARK 3 T33: 0.2039 T12: 0.0584 REMARK 3 T13: 0.0352 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.0193 L22: 0.9047 REMARK 3 L33: 0.9978 L12: 0.1113 REMARK 3 L13: -0.1029 L23: -0.2743 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.0063 S13: -0.2473 REMARK 3 S21: -0.1360 S22: -0.0442 S23: -0.3184 REMARK 3 S31: 0.5150 S32: 0.2208 S33: 0.0298 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4187 -17.5210 -8.1374 REMARK 3 T TENSOR REMARK 3 T11: 0.5091 T22: 0.2234 REMARK 3 T33: 0.2657 T12: -0.0065 REMARK 3 T13: 0.0134 T23: -0.0820 REMARK 3 L TENSOR REMARK 3 L11: 2.4141 L22: 0.5153 REMARK 3 L33: 0.5604 L12: -0.4080 REMARK 3 L13: 0.9395 L23: -0.4535 REMARK 3 S TENSOR REMARK 3 S11: 0.0702 S12: 0.4457 S13: -0.4976 REMARK 3 S21: -0.0476 S22: 0.0169 S23: -0.0024 REMARK 3 S31: 0.7349 S32: 0.0431 S33: 0.0745 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.0392 -9.0789 3.6737 REMARK 3 T TENSOR REMARK 3 T11: 0.3065 T22: 0.2794 REMARK 3 T33: 0.2725 T12: -0.1340 REMARK 3 T13: 0.0459 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.1773 L22: 0.3466 REMARK 3 L33: 0.2919 L12: 0.0703 REMARK 3 L13: 0.2258 L23: 0.0531 REMARK 3 S TENSOR REMARK 3 S11: -0.1097 S12: 0.0209 S13: 0.0209 REMARK 3 S21: 0.2418 S22: 0.0083 S23: 0.2816 REMARK 3 S31: 0.1484 S32: -0.2803 S33: -0.0309 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4426 20.4707 1.2182 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.1927 REMARK 3 T33: 0.2369 T12: 0.0130 REMARK 3 T13: -0.0174 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.4263 L22: 0.9360 REMARK 3 L33: 0.4685 L12: -0.5693 REMARK 3 L13: 0.0139 L23: -0.1206 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: 0.0067 S13: 0.1403 REMARK 3 S21: 0.0132 S22: 0.0332 S23: -0.0388 REMARK 3 S31: -0.3020 S32: -0.0885 S33: -0.0075 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7967 -8.2609 16.0320 REMARK 3 T TENSOR REMARK 3 T11: 0.1865 T22: 0.2662 REMARK 3 T33: 0.1878 T12: 0.0231 REMARK 3 T13: 0.0337 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.0236 L22: 0.0360 REMARK 3 L33: 0.0554 L12: 0.0275 REMARK 3 L13: -0.0009 L23: 0.0128 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: 0.0111 S13: -0.2361 REMARK 3 S21: 0.1573 S22: -0.2667 S23: 0.0131 REMARK 3 S31: 0.4039 S32: 0.3380 S33: 0.0008 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7062 3.5771 4.2673 REMARK 3 T TENSOR REMARK 3 T11: 0.2531 T22: 0.2988 REMARK 3 T33: 0.2515 T12: -0.0131 REMARK 3 T13: -0.0049 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.1659 L22: 0.6180 REMARK 3 L33: 0.1082 L12: -0.0101 REMARK 3 L13: -0.1211 L23: -0.1012 REMARK 3 S TENSOR REMARK 3 S11: -0.2734 S12: -0.0203 S13: 0.3246 REMARK 3 S21: 0.0370 S22: -0.0255 S23: -0.2392 REMARK 3 S31: -0.3425 S32: 0.4626 S33: -0.0784 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UJA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-15. REMARK 100 THE DEPOSITION ID IS D_1290063559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 70 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30034 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 43.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3VQH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML PROTEIN, 25MM BISTRIS/MES REMARK 280 PH6.9, 50MM KCL, 1.5MM OCTANOYL-N-METHYLGLUCAMIDE, 1MM PROTEIN REMARK 280 KINASE INHIBITOR PEPTIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.12000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.02000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.02000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.12000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 GLN A 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2025 O HOH A 2263 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 99 109.07 -160.42 REMARK 500 ASP A 166 45.47 -143.06 REMARK 500 THR A 183 -163.62 -125.31 REMARK 500 ASP A 184 64.42 62.94 REMARK 500 ASN A 216 -154.89 -141.11 REMARK 500 LEU A 273 46.79 -88.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 PHOSPHOSERINE (SEP): PHOSPHOSERINE REMARK 600 (4S)-2-METHYL-2,4-PENTANEDIOL (MPD): MPD REMARK 600 (4S)-2-METHYL-2,4-PENTANEDIOL (DRG): DRG REMARK 600 PHOSPHOTHREONINE (TPO): PHOSPHOTHREONINE REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4L7 A 1351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 1352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1353 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UJ1 RELATED DB: PDB REMARK 900 PKA INHIBITOR COMPLEX REMARK 900 RELATED ID: 4UJ2 RELATED DB: PDB REMARK 900 PKA INHIBITOR COMPLEX REMARK 900 RELATED ID: 4UJ9 RELATED DB: PDB REMARK 900 PROTEIN KINASE A IN COMPLEX WITH AN INHIBITOR REMARK 900 RELATED ID: 4UJB RELATED DB: PDB REMARK 900 PROTEIN KINASE A IN COMPLEX WITH AN INHIBITOR DBREF 4UJA A 0 350 UNP P17612 KAPCA_HUMAN 1 351 DBREF 4UJA B 5 24 PDB 4UJA 4UJA 5 24 SEQRES 1 A 351 MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN SEQRES 2 A 351 GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP SEQRES 3 A 351 PHE LEU LYS LYS TRP GLU SER PRO ALA GLN ASN THR ALA SEQRES 4 A 351 HIS LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR SEQRES 5 A 351 GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SEQRES 6 A 351 THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN SEQRES 7 A 351 LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN SEQRES 8 A 351 GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU SEQRES 9 A 351 VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU SEQRES 10 A 351 TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU MET PHE SEQRES 11 A 351 SER HIS LEU ARG ARG ILE GLY ARG PHE SER GLU PRO HIS SEQRES 12 A 351 ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU SEQRES 13 A 351 TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS SEQRES 14 A 351 PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN SEQRES 15 A 351 VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG SEQRES 16 A 351 THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO SEQRES 17 A 351 GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP SEQRES 18 A 351 TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA SEQRES 19 A 351 GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE SEQRES 20 A 351 TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER SEQRES 21 A 351 HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU SEQRES 22 A 351 LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS SEQRES 23 A 351 ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA SEQRES 24 A 351 THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU SEQRES 25 A 351 ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SEQRES 26 A 351 SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEQRES 27 A 351 SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE SEQRES 1 B 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 B 20 ARG ARG ASN ALA ILE HIS ASP MODRES 4UJA TPO A 197 THR PHOSPHOTHREONINE MODRES 4UJA SEP A 338 SER PHOSPHOSERINE HET TPO A 197 11 HET SEP A 338 10 HET 4L7 A1351 38 HET BR A1352 1 HET MPD A1353 22 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM 4L7 7-{(3S,4R)-4-[(5-BROMOTHIOPHEN-2-YL) HETNAM 2 4L7 CARBONYL]PYRROLIDIN-3-YL}QUINAZOLIN-4(3H)-ONE HETNAM BR BROMIDE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 SEP C3 H8 N O6 P FORMUL 3 4L7 C17 H14 BR N3 O2 S FORMUL 4 BR BR 1- FORMUL 5 MPD C6 H14 O2 FORMUL 6 HOH *294(H2 O) HELIX 1 1 GLU A 13 SER A 32 1 20 HELIX 2 2 HIS A 39 ASP A 41 5 3 HELIX 3 3 LYS A 76 LEU A 82 1 7 HELIX 4 4 GLN A 84 GLN A 96 1 13 HELIX 5 5 GLU A 127 GLY A 136 1 10 HELIX 6 6 SER A 139 LEU A 160 1 22 HELIX 7 7 LYS A 168 GLU A 170 5 3 HELIX 8 8 THR A 201 LEU A 205 5 5 HELIX 9 9 ALA A 206 LEU A 211 1 6 HELIX 10 10 LYS A 217 GLY A 234 1 18 HELIX 11 11 GLN A 242 GLY A 253 1 12 HELIX 12 12 SER A 262 LEU A 273 1 12 HELIX 13 13 ASP A 276 ARG A 280 5 5 HELIX 14 14 VAL A 288 ASN A 293 1 6 HELIX 15 15 HIS A 294 ALA A 298 5 5 HELIX 16 16 ASP A 301 GLN A 307 1 7 HELIX 17 17 THR B 5 ALA B 12 1 8 SHEET 1 AA 5 PHE A 43 THR A 51 0 SHEET 2 AA 5 GLY A 55 HIS A 62 -1 O VAL A 57 N LEU A 49 SHEET 3 AA 5 HIS A 68 ASP A 75 -1 O TYR A 69 N VAL A 60 SHEET 4 AA 5 ASN A 115 GLU A 121 -1 O LEU A 116 N LEU A 74 SHEET 5 AA 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AB 2 LEU A 162 ILE A 163 0 SHEET 2 AB 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AC 2 LEU A 172 ILE A 174 0 SHEET 2 AC 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.32 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 SITE 1 AC1 19 GLY A 50 THR A 51 GLY A 52 GLY A 55 SITE 2 AC1 19 ARG A 56 VAL A 57 ALA A 70 LYS A 72 SITE 3 AC1 19 LEU A 74 GLU A 121 TYR A 122 VAL A 123 SITE 4 AC1 19 GLU A 127 GLU A 170 ASN A 171 LEU A 173 SITE 5 AC1 19 THR A 183 ASP A 184 BR A1352 SITE 1 AC2 5 GLY A 52 SER A 53 PHE A 54 4L7 A1351 SITE 2 AC2 5 HOH A2061 SITE 1 AC3 5 ARG A 134 SER A 325 ASN A 326 PHE A 327 SITE 2 AC3 5 ASP A 328 CRYST1 72.240 74.920 80.040 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013843 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013348 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012494 0.00000