data_4ULL # _entry.id 4ULL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4ULL WWPDB D_1000179445 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4ULL _pdbx_database_status.recvd_initial_deposition_date 1996-12-17 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Richardson, J.M.' 1 'Evans, P.D.' 2 'Homans, S.W.' 3 'Donohue-Rolfe, A.' 4 # _citation.id primary _citation.title 'Solution structure of the carbohydrate-binding B-subunit homopentamer of verotoxin VT-1 from E. coli.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 4 _citation.page_first 190 _citation.page_last 193 _citation.year 1997 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9164458 _citation.pdbx_database_id_DOI 10.1038/nsb0397-190 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Richardson, J.M.' 1 ? primary 'Evans, P.D.' 2 ? primary 'Homans, S.W.' 3 ? primary 'Donohue-Rolfe, A.' 4 ? # _cell.entry_id 4ULL _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ULL _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Shiga toxin 1B' _entity.formula_weight 7698.634 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR _entity_poly.pdbx_seq_one_letter_code_can TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 PRO n 1 3 ASP n 1 4 CYS n 1 5 VAL n 1 6 THR n 1 7 GLY n 1 8 LYS n 1 9 VAL n 1 10 GLU n 1 11 TYR n 1 12 THR n 1 13 LYS n 1 14 TYR n 1 15 ASN n 1 16 ASP n 1 17 ASP n 1 18 ASP n 1 19 THR n 1 20 PHE n 1 21 THR n 1 22 VAL n 1 23 LYS n 1 24 VAL n 1 25 GLY n 1 26 ASP n 1 27 LYS n 1 28 GLU n 1 29 LEU n 1 30 PHE n 1 31 THR n 1 32 ASN n 1 33 ARG n 1 34 TRP n 1 35 ASN n 1 36 LEU n 1 37 GLN n 1 38 SER n 1 39 LEU n 1 40 LEU n 1 41 LEU n 1 42 SER n 1 43 ALA n 1 44 GLN n 1 45 ILE n 1 46 THR n 1 47 GLY n 1 48 MET n 1 49 THR n 1 50 VAL n 1 51 THR n 1 52 ILE n 1 53 LYS n 1 54 THR n 1 55 ASN n 1 56 ALA n 1 57 CYS n 1 58 HIS n 1 59 ASN n 1 60 GLY n 1 61 GLY n 1 62 GLY n 1 63 PHE n 1 64 SER n 1 65 GLU n 1 66 VAL n 1 67 ILE n 1 68 PHE n 1 69 ARG n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 69 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Escherichia coli' _entity_src_nat.pdbx_ncbi_taxonomy_id 562 _entity_src_nat.genus ', Lambda-like viruses' _entity_src_nat.species , _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8G8Y6_ECOLX _struct_ref.pdbx_db_accession Q8G8Y6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR _struct_ref.pdbx_align_begin 17 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4ULL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 69 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8G8Y6 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 85 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 69 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 'ASSIGNMENT HNCO' 1 2 1 HCACO 1 3 1 HNCOCA 1 4 1 '3D TOCSY. 1H-1H DISTANCE DERIVATION; 3D-NOESY' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 318 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model UNITYPLUS _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 500.3 # _pdbx_nmr_refine.entry_id 4ULL _pdbx_nmr_refine.method 'SIMULATED ANNEALING/ MOLECULAR DYNAMICS' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 4ULL _pdbx_nmr_details.text ;THE STRUCTURE WAS DETERMINED BY TRIPLE-RESONANCE NMR SPECTROSCOPY ON UNIFORMLY 13C, 15N-LABELED VEROTOXIN-1. IONIC_STRENGTH: 200 MM PRESSURE: ATMOSPHERIC SOLVENT SYSTEM: H20 ; # _pdbx_nmr_ensemble.entry_id 4ULL _pdbx_nmr_ensemble.conformers_calculated_total_number 40 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.conformer_selection_criteria 'NO RESTRAINT VIOLATIONS ABOVE 0.7 ANGSTROM' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR ? BRUNGER 1 'structure solution' XPLOR 3.1 ? 2 # _exptl.entry_id 4ULL _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 4ULL _struct.title 'SOLUTION NMR STRUCTURE OF VEROTOXIN-1 B-SUBUNIT FROM E. COLI, 5 STRUCTURES' _struct.pdbx_descriptor 'SHIGA-LIKE TOXIN I SUBUNIT B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4ULL _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text TOXIN # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag Y _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id LEU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 36 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id THR _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 46 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id LEU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 36 _struct_conf.end_auth_comp_id THR _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 46 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 4 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 57 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 4 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 57 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.017 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 5 ? GLY A 7 ? VAL A 5 GLY A 7 A 2 VAL A 50 ? LYS A 53 ? VAL A 50 LYS A 53 A 3 GLU A 65 ? ILE A 67 ? GLU A 65 ILE A 67 B 1 THR A 21 ? VAL A 24 ? THR A 21 VAL A 24 B 2 LYS A 27 ? PHE A 30 ? LYS A 27 PHE A 30 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 5 ? O VAL A 5 N ILE A 52 ? N ILE A 52 A 2 3 O THR A 51 ? O THR A 51 N ILE A 67 ? N ILE A 67 B 1 2 O VAL A 22 ? O VAL A 22 N LEU A 29 ? N LEU A 29 # _database_PDB_matrix.entry_id 4ULL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4ULL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 ARG 33 33 33 ARG ARG A . n A 1 34 TRP 34 34 34 TRP TRP A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 MET 48 48 48 MET MET A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 CYS 57 57 57 CYS CYS A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 ARG 69 69 69 ARG ARG A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-04-01 2 'Structure model' 1 1 2008-03-25 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-12-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Source and taxonomy' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity 2 4 'Structure model' entity_name_com 3 4 'Structure model' entity_src_nat 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_struct_assembly 6 4 'Structure model' pdbx_struct_oper_list 7 4 'Structure model' struct_ref 8 4 'Structure model' struct_ref_seq # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_entity.pdbx_description' 2 4 'Structure model' '_entity_src_nat.common_name' 3 4 'Structure model' '_entity_src_nat.pdbx_beg_seq_num' 4 4 'Structure model' '_entity_src_nat.pdbx_end_seq_num' 5 4 'Structure model' '_entity_src_nat.pdbx_ncbi_taxonomy_id' 6 4 'Structure model' '_entity_src_nat.pdbx_organism_scientific' 7 4 'Structure model' '_entity_src_nat.strain' 8 4 'Structure model' '_pdbx_database_status.process_site' 9 4 'Structure model' '_struct_ref.db_code' 10 4 'Structure model' '_struct_ref.pdbx_align_begin' 11 4 'Structure model' '_struct_ref.pdbx_db_accession' 12 4 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 13 4 'Structure model' '_struct_ref_seq.db_align_beg' 14 4 'Structure model' '_struct_ref_seq.db_align_end' 15 4 'Structure model' '_struct_ref_seq.pdbx_db_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ3 A LYS 13 ? ? OG1 A THR 21 ? ? 1.30 2 1 OG1 A THR 6 ? ? HZ1 A LYS 8 ? ? 1.31 3 1 HZ2 A LYS 13 ? ? OD1 A ASN 15 ? ? 1.36 4 1 O A ASP 26 ? ? HZ1 A LYS 27 ? ? 1.37 5 1 HZ3 A LYS 53 ? ? OE1 A GLU 65 ? ? 1.41 6 1 OD1 A ASP 3 ? ? HZ1 A LYS 53 ? ? 1.42 7 1 O A SER 38 ? ? HG A SER 42 ? ? 1.43 8 1 O A GLU 10 ? ? HZ3 A LYS 23 ? ? 1.44 9 1 O A LYS 53 ? ? HG1 A THR 54 ? ? 1.45 10 1 HZ2 A LYS 8 ? ? O A GLY 25 ? ? 1.46 11 1 O A ALA 43 ? ? H A GLY 47 ? ? 1.47 12 1 O A SER 42 ? ? HG1 A THR 46 ? ? 1.52 13 1 HG1 A THR 6 ? ? OD2 A ASP 26 ? ? 1.52 14 1 HE A ARG 33 ? ? OG A SER 64 ? ? 1.52 15 1 HG1 A THR 1 ? ? OD2 A ASP 3 ? ? 1.60 16 2 HZ3 A LYS 13 ? ? OG1 A THR 21 ? ? 1.31 17 2 OG1 A THR 6 ? ? HZ1 A LYS 8 ? ? 1.31 18 2 O A ASP 26 ? ? HZ1 A LYS 27 ? ? 1.35 19 2 HZ2 A LYS 13 ? ? OD1 A ASN 15 ? ? 1.36 20 2 OD1 A ASP 3 ? ? HZ1 A LYS 53 ? ? 1.41 21 2 O A SER 38 ? ? HG A SER 42 ? ? 1.42 22 2 HZ3 A LYS 53 ? ? OE1 A GLU 65 ? ? 1.42 23 2 O A GLU 10 ? ? HZ3 A LYS 23 ? ? 1.44 24 2 O A LYS 53 ? ? HG1 A THR 54 ? ? 1.44 25 2 HZ2 A LYS 8 ? ? O A GLY 25 ? ? 1.45 26 2 O A ALA 43 ? ? H A GLY 47 ? ? 1.47 27 2 O A SER 42 ? ? HG1 A THR 46 ? ? 1.51 28 2 HG1 A THR 6 ? ? OD2 A ASP 26 ? ? 1.52 29 2 HE A ARG 33 ? ? OG A SER 64 ? ? 1.53 30 2 HG1 A THR 1 ? ? OD2 A ASP 3 ? ? 1.58 31 3 HZ3 A LYS 13 ? ? OG1 A THR 21 ? ? 1.30 32 3 OG1 A THR 6 ? ? HZ1 A LYS 8 ? ? 1.31 33 3 O A ASP 26 ? ? HZ1 A LYS 27 ? ? 1.35 34 3 HZ2 A LYS 13 ? ? OD1 A ASN 15 ? ? 1.35 35 3 HZ3 A LYS 53 ? ? OE1 A GLU 65 ? ? 1.42 36 3 O A SER 38 ? ? HG A SER 42 ? ? 1.42 37 3 OD1 A ASP 3 ? ? HZ1 A LYS 53 ? ? 1.43 38 3 O A GLU 10 ? ? HZ3 A LYS 23 ? ? 1.43 39 3 O A LYS 53 ? ? HG1 A THR 54 ? ? 1.45 40 3 HZ2 A LYS 8 ? ? O A GLY 25 ? ? 1.46 41 3 O A ALA 43 ? ? H A GLY 47 ? ? 1.47 42 3 HE A ARG 33 ? ? OG A SER 64 ? ? 1.51 43 3 O A SER 42 ? ? HG1 A THR 46 ? ? 1.51 44 3 HG1 A THR 6 ? ? OD2 A ASP 26 ? ? 1.52 45 3 HG1 A THR 1 ? ? OD2 A ASP 3 ? ? 1.59 46 4 HZ3 A LYS 13 ? ? OG1 A THR 21 ? ? 1.30 47 4 OG1 A THR 6 ? ? HZ1 A LYS 8 ? ? 1.31 48 4 HZ2 A LYS 13 ? ? OD1 A ASN 15 ? ? 1.35 49 4 O A ASP 26 ? ? HZ1 A LYS 27 ? ? 1.36 50 4 OD1 A ASP 3 ? ? HZ1 A LYS 53 ? ? 1.41 51 4 O A SER 38 ? ? HG A SER 42 ? ? 1.42 52 4 HZ3 A LYS 53 ? ? OE1 A GLU 65 ? ? 1.42 53 4 O A GLU 10 ? ? HZ3 A LYS 23 ? ? 1.44 54 4 O A LYS 53 ? ? HG1 A THR 54 ? ? 1.45 55 4 HZ2 A LYS 8 ? ? O A GLY 25 ? ? 1.46 56 4 O A ALA 43 ? ? H A GLY 47 ? ? 1.46 57 4 HG1 A THR 6 ? ? OD2 A ASP 26 ? ? 1.52 58 4 O A SER 42 ? ? HG1 A THR 46 ? ? 1.52 59 4 HE A ARG 33 ? ? OG A SER 64 ? ? 1.54 60 4 HG1 A THR 1 ? ? OD2 A ASP 3 ? ? 1.58 61 5 HZ3 A LYS 13 ? ? OG1 A THR 21 ? ? 1.30 62 5 OG1 A THR 6 ? ? HZ1 A LYS 8 ? ? 1.32 63 5 O A ASP 26 ? ? HZ1 A LYS 27 ? ? 1.36 64 5 HZ2 A LYS 13 ? ? OD1 A ASN 15 ? ? 1.36 65 5 HZ3 A LYS 53 ? ? OE1 A GLU 65 ? ? 1.41 66 5 OD1 A ASP 3 ? ? HZ1 A LYS 53 ? ? 1.42 67 5 O A SER 38 ? ? HG A SER 42 ? ? 1.43 68 5 O A LYS 53 ? ? HG1 A THR 54 ? ? 1.43 69 5 O A GLU 10 ? ? HZ3 A LYS 23 ? ? 1.44 70 5 HZ2 A LYS 8 ? ? O A GLY 25 ? ? 1.45 71 5 O A ALA 43 ? ? H A GLY 47 ? ? 1.46 72 5 HG1 A THR 6 ? ? OD2 A ASP 26 ? ? 1.51 73 5 O A SER 42 ? ? HG1 A THR 46 ? ? 1.51 74 5 HE A ARG 33 ? ? OG A SER 64 ? ? 1.52 75 5 HG1 A THR 1 ? ? OD2 A ASP 3 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 3 ? ? -88.02 -146.98 2 1 CYS A 4 ? ? -171.42 -86.86 3 1 LYS A 8 ? ? -72.69 -146.30 4 1 VAL A 9 ? ? -158.04 66.71 5 1 GLU A 10 ? ? -101.29 59.13 6 1 TYR A 11 ? ? 124.05 103.80 7 1 ASN A 15 ? ? -165.85 -40.70 8 1 ASP A 17 ? ? 171.54 -41.41 9 1 ASP A 18 ? ? -145.70 -36.64 10 1 THR A 19 ? ? -48.93 -78.18 11 1 PHE A 20 ? ? 69.74 176.28 12 1 LYS A 23 ? ? -109.13 72.04 13 1 ARG A 33 ? ? -161.69 -55.15 14 1 TRP A 34 ? ? 178.28 -26.65 15 1 ASN A 35 ? ? 179.53 69.16 16 1 MET A 48 ? ? 142.20 60.37 17 1 THR A 49 ? ? -176.90 67.55 18 1 VAL A 50 ? ? -77.52 -151.15 19 1 THR A 54 ? ? 67.76 161.74 20 1 ALA A 56 ? ? 75.07 -57.08 21 1 ASN A 59 ? ? 58.03 81.94 22 1 PHE A 63 ? ? -98.07 -82.75 23 2 ASP A 3 ? ? -88.47 -146.97 24 2 CYS A 4 ? ? -171.63 -86.45 25 2 LYS A 8 ? ? -72.83 -145.67 26 2 VAL A 9 ? ? -158.23 67.08 27 2 GLU A 10 ? ? -101.48 58.12 28 2 TYR A 11 ? ? 125.27 103.98 29 2 ASN A 15 ? ? -166.62 -40.22 30 2 ASP A 17 ? ? 171.22 -41.04 31 2 ASP A 18 ? ? -145.96 -37.04 32 2 THR A 19 ? ? -48.48 -78.29 33 2 PHE A 20 ? ? 69.77 176.39 34 2 LYS A 23 ? ? -108.42 72.91 35 2 ARG A 33 ? ? -161.79 -55.29 36 2 TRP A 34 ? ? 178.09 -25.86 37 2 ASN A 35 ? ? 178.58 68.34 38 2 MET A 48 ? ? 141.93 60.24 39 2 THR A 49 ? ? -177.00 67.01 40 2 VAL A 50 ? ? -77.57 -151.93 41 2 THR A 54 ? ? 67.70 161.74 42 2 ALA A 56 ? ? 75.16 -56.92 43 2 ASN A 59 ? ? 58.13 81.81 44 2 PHE A 63 ? ? -97.94 -82.02 45 3 ASP A 3 ? ? -88.10 -147.66 46 3 CYS A 4 ? ? -170.77 -86.64 47 3 LYS A 8 ? ? -72.84 -145.92 48 3 VAL A 9 ? ? -158.17 67.19 49 3 GLU A 10 ? ? -101.21 58.55 50 3 TYR A 11 ? ? 124.88 103.36 51 3 ASN A 15 ? ? -165.58 -40.70 52 3 ASP A 17 ? ? 171.51 -40.83 53 3 ASP A 18 ? ? -145.87 -36.79 54 3 THR A 19 ? ? -49.08 -78.05 55 3 PHE A 20 ? ? 69.61 176.46 56 3 LYS A 23 ? ? -108.09 72.85 57 3 ARG A 33 ? ? -161.90 -55.11 58 3 TRP A 34 ? ? 178.25 -26.00 59 3 ASN A 35 ? ? 179.00 68.90 60 3 MET A 48 ? ? 142.11 60.76 61 3 THR A 49 ? ? -177.58 67.57 62 3 VAL A 50 ? ? -78.36 -151.19 63 3 THR A 54 ? ? 67.55 161.63 64 3 ALA A 56 ? ? 75.28 -56.61 65 3 ASN A 59 ? ? 57.82 81.91 66 3 PHE A 63 ? ? -98.42 -83.27 67 4 ASP A 3 ? ? -88.19 -146.68 68 4 CYS A 4 ? ? -171.60 -86.95 69 4 LYS A 8 ? ? -72.44 -145.52 70 4 VAL A 9 ? ? -158.63 66.45 71 4 GLU A 10 ? ? -100.95 58.60 72 4 TYR A 11 ? ? 124.88 103.51 73 4 ASN A 15 ? ? -166.27 -40.66 74 4 ASP A 17 ? ? 171.80 -41.18 75 4 ASP A 18 ? ? -145.61 -36.86 76 4 THR A 19 ? ? -48.55 -78.42 77 4 PHE A 20 ? ? 69.98 176.30 78 4 LYS A 23 ? ? -109.45 72.43 79 4 ARG A 33 ? ? -161.63 -55.63 80 4 TRP A 34 ? ? 178.43 -26.23 81 4 ASN A 35 ? ? 179.01 68.71 82 4 MET A 48 ? ? 142.31 60.87 83 4 THR A 49 ? ? -177.48 66.94 84 4 VAL A 50 ? ? -77.58 -151.41 85 4 THR A 54 ? ? 68.08 162.30 86 4 ALA A 56 ? ? 75.10 -56.54 87 4 ASN A 59 ? ? 57.83 81.79 88 4 PHE A 63 ? ? -98.18 -82.42 89 5 ASP A 3 ? ? -88.55 -147.41 90 5 CYS A 4 ? ? -170.93 -86.82 91 5 LYS A 8 ? ? -72.75 -146.07 92 5 VAL A 9 ? ? -158.07 66.89 93 5 GLU A 10 ? ? -101.24 58.68 94 5 TYR A 11 ? ? 124.63 104.34 95 5 ASN A 15 ? ? -166.16 -40.53 96 5 ASP A 17 ? ? 171.47 -40.75 97 5 ASP A 18 ? ? -146.25 -37.02 98 5 THR A 19 ? ? -48.59 -78.32 99 5 PHE A 20 ? ? 69.89 175.85 100 5 LYS A 23 ? ? -108.96 72.58 101 5 ARG A 33 ? ? -160.97 -55.50 102 5 TRP A 34 ? ? 178.36 -26.18 103 5 ASN A 35 ? ? 178.99 69.01 104 5 MET A 48 ? ? 142.00 60.52 105 5 THR A 49 ? ? -177.35 67.44 106 5 VAL A 50 ? ? -78.07 -151.00 107 5 THR A 54 ? ? 68.22 162.45 108 5 ALA A 56 ? ? 74.19 -56.85 109 5 ASN A 59 ? ? 58.03 82.06 110 5 PHE A 63 ? ? -98.47 -82.05 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 69 ? ? 0.251 'SIDE CHAIN' 2 2 ARG A 69 ? ? 0.252 'SIDE CHAIN' 3 3 ARG A 69 ? ? 0.253 'SIDE CHAIN' 4 4 ARG A 69 ? ? 0.247 'SIDE CHAIN' 5 5 ARG A 69 ? ? 0.251 'SIDE CHAIN' #