HEADER ELECTRON TRANSPORT 14-MAY-14 4ULV TITLE CYTOCHROME C PRIME FROM SHEWANELLA FRIGIDIMARINA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C, CLASS II; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYTOCHROME C PRIME; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA FRIGIDIMARINA; SOURCE 3 ORGANISM_TAXID: 56812; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMMB503EH KEYWDS ELECTRON TRANSPORT, GAS SENSOR EXPDTA X-RAY DIFFRACTION AUTHOR A.A.MANOLE,D.KEKILLI,P.S.DOBBIN,M.A.HOUGH REVDAT 3 10-JAN-24 4ULV 1 REMARK LINK REVDAT 2 03-JUN-15 4ULV 1 JRNL REVDAT 1 08-APR-15 4ULV 0 JRNL AUTH A.MANOLE,D.KEKILLI,D.A.SVISTUNENKO,M.T.WILSON,P.S.DOBBIN, JRNL AUTH 2 M.A.HOUGH JRNL TITL CONFORMATIONAL CONTROL OF THE BINDING OF DIATOMIC GASES TO JRNL TITL 2 CYTOCHROME C'. JRNL REF J.BIOL.INORG.CHEM. V. 20 675 2015 JRNL REFN ISSN 0949-8257 JRNL PMID 25792378 JRNL DOI 10.1007/S00775-015-1253-7 REMARK 2 REMARK 2 RESOLUTION. 1.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 59395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3173 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4274 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 255 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1934 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.53000 REMARK 3 B22 (A**2) : 2.20000 REMARK 3 B33 (A**2) : 2.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.856 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2131 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1947 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2903 ; 2.322 ; 2.034 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4489 ; 2.818 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 290 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2606 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 480 ; 0.017 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1043 ; 2.153 ; 1.234 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1042 ; 2.153 ; 1.232 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1306 ; 2.700 ; 1.862 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1088 ; 4.043 ; 1.482 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4078 ;16.154 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 71 ;36.627 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4250 ;16.331 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4ULV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290060623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : SI MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62629 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.290 REMARK 200 RESOLUTION RANGE LOW (A) : 44.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2YLI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M AM SULFATE, 0.1M HEPES PH7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.70450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.06100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.16150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.06100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.70450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.16150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 3 OE1 REMARK 480 GLU A 4 CD OE1 OE2 REMARK 480 LYS A 65 CE NZ REMARK 480 LYS A 73 NZ REMARK 480 LYS A 108 CE NZ REMARK 480 GLU B 3 CG CD OE1 OE2 REMARK 480 GLN B 109 CD OE1 NE2 REMARK 480 LYS B 116 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2003 O HOH A 2005 1.75 REMARK 500 O HOH A 2004 O HOH A 2005 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 116 O HOH B 2115 4555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 65 CD LYS A 65 CE -0.209 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 3 OE1 - CD - OE2 ANGL. DEV. = 11.8 DEGREES REMARK 500 GLU A 3 CG - CD - OE1 ANGL. DEV. = -14.0 DEGREES REMARK 500 ASP A 77 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ASP A 77 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 LYS A 108 CD - CE - NZ ANGL. DEV. = 18.4 DEGREES REMARK 500 CYS A 118 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP B 128 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 128 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 63 47.16 -78.02 REMARK 500 ASP B 103 108.52 -57.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 129 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 122 NE2 REMARK 620 2 HEC A 129 NA 97.6 REMARK 620 3 HEC A 129 NB 96.5 91.0 REMARK 620 4 HEC A 129 NC 94.5 167.9 88.4 REMARK 620 5 HEC A 129 ND 96.7 88.1 166.8 89.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 129 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 122 NE2 REMARK 620 2 HEC B 129 NA 95.8 REMARK 620 3 HEC B 129 NB 96.4 91.5 REMARK 620 4 HEC B 129 NC 93.1 170.7 90.0 REMARK 620 5 HEC B 129 ND 95.9 88.3 167.7 88.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 130 DBREF 4ULV A 1 128 UNP Q07Z15 Q07Z15_SHEFN 22 149 DBREF 4ULV B 1 128 UNP Q07Z15 Q07Z15_SHEFN 22 149 SEQRES 1 A 128 ASN PHE GLU GLU PRO ALA ASP ALA ILE GLU TYR ARG GLN SEQRES 2 A 128 ALA ALA PHE GLY LEU ILE ALA TYR ASN PHE GLY ASP MET SEQRES 3 A 128 GLY ALA MET LEU LYS GLY LYS LYS PRO PHE ASP ALA ALA SEQRES 4 A 128 VAL PHE SER THR ARG ALA ASP ASN VAL ALA ALA LEU SER SEQRES 5 A 128 LYS ILE PRO HIS GLU GLY PHE ILE ALA GLY SER ASP LYS SEQRES 6 A 128 GLY ASP THR GLU ALA LEU ALA LYS ILE TRP GLN ASP LYS SEQRES 7 A 128 ALA ASP PHE ASP SER LYS MET THR ALA PHE GLN ASP ASN SEQRES 8 A 128 ALA ALA ALA LEU ALA VAL ALA ALA LYS SER SER ASP GLN SEQRES 9 A 128 ASN ASN ILE LYS GLN ALA PHE ALA ASN THR GLY LYS SER SEQRES 10 A 128 CYS LYS GLY CYS HIS ASP VAL TYR LYS LYS ASP SEQRES 1 B 128 ASN PHE GLU GLU PRO ALA ASP ALA ILE GLU TYR ARG GLN SEQRES 2 B 128 ALA ALA PHE GLY LEU ILE ALA TYR ASN PHE GLY ASP MET SEQRES 3 B 128 GLY ALA MET LEU LYS GLY LYS LYS PRO PHE ASP ALA ALA SEQRES 4 B 128 VAL PHE SER THR ARG ALA ASP ASN VAL ALA ALA LEU SER SEQRES 5 B 128 LYS ILE PRO HIS GLU GLY PHE ILE ALA GLY SER ASP LYS SEQRES 6 B 128 GLY ASP THR GLU ALA LEU ALA LYS ILE TRP GLN ASP LYS SEQRES 7 B 128 ALA ASP PHE ASP SER LYS MET THR ALA PHE GLN ASP ASN SEQRES 8 B 128 ALA ALA ALA LEU ALA VAL ALA ALA LYS SER SER ASP GLN SEQRES 9 B 128 ASN ASN ILE LYS GLN ALA PHE ALA ASN THR GLY LYS SER SEQRES 10 B 128 CYS LYS GLY CYS HIS ASP VAL TYR LYS LYS ASP HET HEC A 129 43 HET GOL A 130 6 HET GOL A 131 6 HET SO4 A 132 5 HET SO4 A 133 5 HET HEC B 129 43 HET GOL B 130 6 HETNAM HEC HEME C HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 6 SO4 2(O4 S 2-) FORMUL 10 HOH *295(H2 O) HELIX 1 1 GLU A 4 LYS A 31 1 28 HELIX 2 2 ASP A 37 SER A 52 1 16 HELIX 3 3 LYS A 53 PHE A 59 5 7 HELIX 4 4 ALA A 72 ASP A 77 1 6 HELIX 5 5 ASP A 77 ALA A 99 1 23 HELIX 6 6 ASP A 103 LYS A 126 1 24 HELIX 7 7 GLU B 4 LYS B 31 1 28 HELIX 8 8 ASP B 37 SER B 52 1 16 HELIX 9 9 LYS B 53 PHE B 59 5 7 HELIX 10 10 ALA B 72 ASP B 77 1 6 HELIX 11 11 ASP B 77 ALA B 99 1 23 HELIX 12 12 ASP B 103 LYS B 126 1 24 LINK SG CYS A 118 CAB HEC A 129 1555 1555 1.96 LINK SG CYS A 121 CAC HEC A 129 1555 1555 1.90 LINK SG CYS B 118 CAB HEC B 129 1555 1555 1.90 LINK SG CYS B 121 CAC HEC B 129 1555 1555 1.92 LINK NE2 HIS A 122 FE HEC A 129 1555 1555 2.17 LINK NE2 HIS B 122 FE HEC B 129 1555 1555 2.18 SITE 1 AC1 17 ARG A 12 GLN A 13 PHE A 16 ALA A 20 SITE 2 AC1 17 PHE A 59 THR A 68 GLU A 69 MET A 85 SITE 3 AC1 17 PHE A 88 SER A 117 CYS A 118 CYS A 121 SITE 4 AC1 17 HIS A 122 LYS A 126 HOH A2025 HOH A2144 SITE 5 AC1 17 HOH A2145 SITE 1 AC2 12 HIS A 56 GLU A 57 PHE A 59 ILE A 60 SITE 2 AC2 12 LYS A 78 LYS A 100 SER A 101 SER A 102 SITE 3 AC2 12 SO4 A 133 HOH A2075 HOH A2092 HOH A2115 SITE 1 AC3 8 THR A 43 SER A 83 THR A 86 ALA A 87 SITE 2 AC3 8 HOH A2058 HOH A2106 LYS B 53 GLN B 89 SITE 1 AC4 5 LYS A 31 LYS A 33 ASP A 67 HOH A2043 SITE 2 AC4 5 HOH A2082 SITE 1 AC5 7 ILE A 60 ALA A 61 SER A 101 SER A 102 SITE 2 AC5 7 GOL A 130 HOH A2078 HOH A2149 SITE 1 AC6 17 ARG B 12 GLN B 13 PHE B 16 ALA B 20 SITE 2 AC6 17 PHE B 59 THR B 68 GLU B 69 PHE B 81 SITE 3 AC6 17 MET B 85 PHE B 88 SER B 117 CYS B 118 SITE 4 AC6 17 CYS B 121 HIS B 122 LYS B 126 HOH B2020 SITE 5 AC6 17 HOH B2146 SITE 1 AC7 8 PHE A 36 ASP A 37 ALA A 38 GLU A 57 SITE 2 AC7 8 HOH A2073 HOH A2074 THR B 43 HOH B2147 CRYST1 55.409 58.323 76.122 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018048 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013137 0.00000