data_4UMD # _entry.id 4UMD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4UMD pdb_00004umd 10.2210/pdb4umd/pdb PDBE EBI-60597 ? ? WWPDB D_1290060597 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-02-11 2 'Structure model' 1 1 2015-02-25 3 'Structure model' 1 2 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4UMD _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2014-05-16 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4UM5 unspecified ;CRYSTAL STRUCTURE OF 3-DEOXY-D-MANNO-OCTULOSONATE 8- PHOSPHATE PHOSPHATASE FROM MORAXELLA CATARRHALIS IN COMPLEX WITH MAGNESIUM ION AND PHOSPHATE ION ; PDB 4UM7 unspecified ;CRYSTAL STRUCTURE OF 3-DEOXY-D-MANNO-OCTULOSONATE 8- PHOSPHATE PHOSPHATASE (KDSC) FROM MORAXELLA CATARRHALIS IN COMPLEX WITH MAGNESIUM ION ; PDB 4UME unspecified ;CRYSTAL STRUCTURE OF 3-DEOXY-D-MANNO-OCTULOSONATE 8- PHOSPHATE PHOSPHATASE FROM MORAXELLA CATARRHALIS IN COMPLEX WITH MAGNESIUM ION AND KDO MOLECULE ; PDB 4UMF unspecified ;CRYSTAL STRUCTURE OF 3-DEOXY-D-MANNO-OCTULOSONATE 8- PHOSPHATE PHOSPHATASE FROM MORAXELLA CATARRHALIS IN COMPLEX WITH MAGNESIUM ION, PHOSPHATE ION AND KDO MOLECULE ; # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dhindwal, S.' 1 'Tomar, S.' 2 'Kumar, P.' 3 # _citation.id primary _citation.title ;Ligand-Bound Structures of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Phosphatase from Moraxella Catarrhalis Reveal a Water Channel Connecting to the Active Site for the Second Step of Catalysis ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 71 _citation.page_first 239 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25664734 _citation.pdbx_database_id_DOI 10.1107/S1399004714025218 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dhindwal, S.' 1 ? primary 'Priyadarshini, P.' 2 ? primary 'Patil, D.N.' 3 ? primary 'Tapas, S.' 4 ? primary 'Kumar, P.' 5 ? primary 'Tomar, S.' 6 ? primary 'Kumar, P.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE PHOSPHATASE KDSC' 21084.877 1 3.1.3.45 ? ? ? 2 non-polymer syn 'CITRIC ACID' 192.124 1 ? ? ? ? 3 water nat water 18.015 60 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE PHOSPHATASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSENLYFQGHMNEIYQKAKHIKLFAMDVDGILSDGQIIYNSEGTETKAFYVQDGLGLQALKQSGIILAII TGRSSAMVDRRAKELGISHIIQGQDDKLTALVGLTKKLGIELSHCAYIGDDLPDLKAVREAGFGISVPNGCEQTRAVSDY ITTKTGGNGAVREVCELILKAQNNFDAFIATFQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSENLYFQGHMNEIYQKAKHIKLFAMDVDGILSDGQIIYNSEGTETKAFYVQDGLGLQALKQSGIILAII TGRSSAMVDRRAKELGISHIIQGQDDKLTALVGLTKKLGIELSHCAYIGDDLPDLKAVREAGFGISVPNGCEQTRAVSDY ITTKTGGNGAVREVCELILKAQNNFDAFIATFQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CITRIC ACID' CIT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 HIS n 1 21 MET n 1 22 ASN n 1 23 GLU n 1 24 ILE n 1 25 TYR n 1 26 GLN n 1 27 LYS n 1 28 ALA n 1 29 LYS n 1 30 HIS n 1 31 ILE n 1 32 LYS n 1 33 LEU n 1 34 PHE n 1 35 ALA n 1 36 MET n 1 37 ASP n 1 38 VAL n 1 39 ASP n 1 40 GLY n 1 41 ILE n 1 42 LEU n 1 43 SER n 1 44 ASP n 1 45 GLY n 1 46 GLN n 1 47 ILE n 1 48 ILE n 1 49 TYR n 1 50 ASN n 1 51 SER n 1 52 GLU n 1 53 GLY n 1 54 THR n 1 55 GLU n 1 56 THR n 1 57 LYS n 1 58 ALA n 1 59 PHE n 1 60 TYR n 1 61 VAL n 1 62 GLN n 1 63 ASP n 1 64 GLY n 1 65 LEU n 1 66 GLY n 1 67 LEU n 1 68 GLN n 1 69 ALA n 1 70 LEU n 1 71 LYS n 1 72 GLN n 1 73 SER n 1 74 GLY n 1 75 ILE n 1 76 ILE n 1 77 LEU n 1 78 ALA n 1 79 ILE n 1 80 ILE n 1 81 THR n 1 82 GLY n 1 83 ARG n 1 84 SER n 1 85 SER n 1 86 ALA n 1 87 MET n 1 88 VAL n 1 89 ASP n 1 90 ARG n 1 91 ARG n 1 92 ALA n 1 93 LYS n 1 94 GLU n 1 95 LEU n 1 96 GLY n 1 97 ILE n 1 98 SER n 1 99 HIS n 1 100 ILE n 1 101 ILE n 1 102 GLN n 1 103 GLY n 1 104 GLN n 1 105 ASP n 1 106 ASP n 1 107 LYS n 1 108 LEU n 1 109 THR n 1 110 ALA n 1 111 LEU n 1 112 VAL n 1 113 GLY n 1 114 LEU n 1 115 THR n 1 116 LYS n 1 117 LYS n 1 118 LEU n 1 119 GLY n 1 120 ILE n 1 121 GLU n 1 122 LEU n 1 123 SER n 1 124 HIS n 1 125 CYS n 1 126 ALA n 1 127 TYR n 1 128 ILE n 1 129 GLY n 1 130 ASP n 1 131 ASP n 1 132 LEU n 1 133 PRO n 1 134 ASP n 1 135 LEU n 1 136 LYS n 1 137 ALA n 1 138 VAL n 1 139 ARG n 1 140 GLU n 1 141 ALA n 1 142 GLY n 1 143 PHE n 1 144 GLY n 1 145 ILE n 1 146 SER n 1 147 VAL n 1 148 PRO n 1 149 ASN n 1 150 GLY n 1 151 CYS n 1 152 GLU n 1 153 GLN n 1 154 THR n 1 155 ARG n 1 156 ALA n 1 157 VAL n 1 158 SER n 1 159 ASP n 1 160 TYR n 1 161 ILE n 1 162 THR n 1 163 THR n 1 164 LYS n 1 165 THR n 1 166 GLY n 1 167 GLY n 1 168 ASN n 1 169 GLY n 1 170 ALA n 1 171 VAL n 1 172 ARG n 1 173 GLU n 1 174 VAL n 1 175 CYS n 1 176 GLU n 1 177 LEU n 1 178 ILE n 1 179 LEU n 1 180 LYS n 1 181 ALA n 1 182 GLN n 1 183 ASN n 1 184 ASN n 1 185 PHE n 1 186 ASP n 1 187 ALA n 1 188 PHE n 1 189 ILE n 1 190 ALA n 1 191 THR n 1 192 PHE n 1 193 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MORAXELLA CATARRHALIS BC8' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 857574 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET28C _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CIT non-polymer . 'CITRIC ACID' ? 'C6 H8 O7' 192.124 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLU 13 -7 ? ? ? A . n A 1 14 ASN 14 -6 ? ? ? A . n A 1 15 LEU 15 -5 ? ? ? A . n A 1 16 TYR 16 -4 ? ? ? A . n A 1 17 PHE 17 -3 ? ? ? A . n A 1 18 GLN 18 -2 ? ? ? A . n A 1 19 GLY 19 -1 ? ? ? A . n A 1 20 HIS 20 0 ? ? ? A . n A 1 21 MET 21 1 1 MET MET A . n A 1 22 ASN 22 2 2 ASN ASN A . n A 1 23 GLU 23 3 3 GLU GLU A . n A 1 24 ILE 24 4 4 ILE ILE A . n A 1 25 TYR 25 5 5 TYR TYR A . n A 1 26 GLN 26 6 6 GLN GLN A . n A 1 27 LYS 27 7 7 LYS LYS A . n A 1 28 ALA 28 8 8 ALA ALA A . n A 1 29 LYS 29 9 9 LYS LYS A . n A 1 30 HIS 30 10 10 HIS HIS A . n A 1 31 ILE 31 11 11 ILE ILE A . n A 1 32 LYS 32 12 12 LYS LYS A . n A 1 33 LEU 33 13 13 LEU LEU A . n A 1 34 PHE 34 14 14 PHE PHE A . n A 1 35 ALA 35 15 15 ALA ALA A . n A 1 36 MET 36 16 16 MET MET A . n A 1 37 ASP 37 17 17 ASP ASP A . n A 1 38 VAL 38 18 18 VAL VAL A . n A 1 39 ASP 39 19 19 ASP ASP A . n A 1 40 GLY 40 20 20 GLY GLY A . n A 1 41 ILE 41 21 21 ILE ILE A . n A 1 42 LEU 42 22 22 LEU LEU A . n A 1 43 SER 43 23 23 SER SER A . n A 1 44 ASP 44 24 24 ASP ASP A . n A 1 45 GLY 45 25 25 GLY GLY A . n A 1 46 GLN 46 26 26 GLN GLN A . n A 1 47 ILE 47 27 27 ILE ILE A . n A 1 48 ILE 48 28 28 ILE ILE A . n A 1 49 TYR 49 29 29 TYR TYR A . n A 1 50 ASN 50 30 30 ASN ASN A . n A 1 51 SER 51 31 31 SER SER A . n A 1 52 GLU 52 32 32 GLU GLU A . n A 1 53 GLY 53 33 33 GLY GLY A . n A 1 54 THR 54 34 34 THR THR A . n A 1 55 GLU 55 35 35 GLU GLU A . n A 1 56 THR 56 36 36 THR THR A . n A 1 57 LYS 57 37 37 LYS LYS A . n A 1 58 ALA 58 38 38 ALA ALA A . n A 1 59 PHE 59 39 39 PHE PHE A . n A 1 60 TYR 60 40 40 TYR TYR A . n A 1 61 VAL 61 41 41 VAL VAL A . n A 1 62 GLN 62 42 42 GLN GLN A . n A 1 63 ASP 63 43 43 ASP ASP A . n A 1 64 GLY 64 44 44 GLY GLY A . n A 1 65 LEU 65 45 45 LEU LEU A . n A 1 66 GLY 66 46 46 GLY GLY A . n A 1 67 LEU 67 47 47 LEU LEU A . n A 1 68 GLN 68 48 48 GLN GLN A . n A 1 69 ALA 69 49 49 ALA ALA A . n A 1 70 LEU 70 50 50 LEU LEU A . n A 1 71 LYS 71 51 51 LYS LYS A . n A 1 72 GLN 72 52 52 GLN GLN A . n A 1 73 SER 73 53 53 SER SER A . n A 1 74 GLY 74 54 54 GLY GLY A . n A 1 75 ILE 75 55 55 ILE ILE A . n A 1 76 ILE 76 56 56 ILE ILE A . n A 1 77 LEU 77 57 57 LEU LEU A . n A 1 78 ALA 78 58 58 ALA ALA A . n A 1 79 ILE 79 59 59 ILE ILE A . n A 1 80 ILE 80 60 60 ILE ILE A . n A 1 81 THR 81 61 61 THR THR A . n A 1 82 GLY 82 62 62 GLY GLY A . n A 1 83 ARG 83 63 63 ARG ARG A . n A 1 84 SER 84 64 64 SER SER A . n A 1 85 SER 85 65 65 SER SER A . n A 1 86 ALA 86 66 66 ALA ALA A . n A 1 87 MET 87 67 67 MET MET A . n A 1 88 VAL 88 68 68 VAL VAL A . n A 1 89 ASP 89 69 69 ASP ASP A . n A 1 90 ARG 90 70 70 ARG ARG A . n A 1 91 ARG 91 71 71 ARG ARG A . n A 1 92 ALA 92 72 72 ALA ALA A . n A 1 93 LYS 93 73 73 LYS LYS A . n A 1 94 GLU 94 74 74 GLU GLU A . n A 1 95 LEU 95 75 75 LEU LEU A . n A 1 96 GLY 96 76 76 GLY GLY A . n A 1 97 ILE 97 77 77 ILE ILE A . n A 1 98 SER 98 78 78 SER SER A . n A 1 99 HIS 99 79 79 HIS HIS A . n A 1 100 ILE 100 80 80 ILE ILE A . n A 1 101 ILE 101 81 81 ILE ILE A . n A 1 102 GLN 102 82 82 GLN GLN A . n A 1 103 GLY 103 83 83 GLY GLY A . n A 1 104 GLN 104 84 84 GLN GLN A . n A 1 105 ASP 105 85 85 ASP ASP A . n A 1 106 ASP 106 86 86 ASP ASP A . n A 1 107 LYS 107 87 87 LYS LYS A . n A 1 108 LEU 108 88 88 LEU LEU A . n A 1 109 THR 109 89 89 THR THR A . n A 1 110 ALA 110 90 90 ALA ALA A . n A 1 111 LEU 111 91 91 LEU LEU A . n A 1 112 VAL 112 92 92 VAL VAL A . n A 1 113 GLY 113 93 93 GLY GLY A . n A 1 114 LEU 114 94 94 LEU LEU A . n A 1 115 THR 115 95 95 THR THR A . n A 1 116 LYS 116 96 96 LYS LYS A . n A 1 117 LYS 117 97 97 LYS LYS A . n A 1 118 LEU 118 98 98 LEU LEU A . n A 1 119 GLY 119 99 99 GLY GLY A . n A 1 120 ILE 120 100 100 ILE ILE A . n A 1 121 GLU 121 101 101 GLU GLU A . n A 1 122 LEU 122 102 102 LEU LEU A . n A 1 123 SER 123 103 103 SER SER A . n A 1 124 HIS 124 104 104 HIS HIS A . n A 1 125 CYS 125 105 105 CYS CYS A . n A 1 126 ALA 126 106 106 ALA ALA A . n A 1 127 TYR 127 107 107 TYR TYR A . n A 1 128 ILE 128 108 108 ILE ILE A . n A 1 129 GLY 129 109 109 GLY GLY A . n A 1 130 ASP 130 110 110 ASP ASP A . n A 1 131 ASP 131 111 111 ASP ASP A . n A 1 132 LEU 132 112 112 LEU LEU A . n A 1 133 PRO 133 113 113 PRO PRO A . n A 1 134 ASP 134 114 114 ASP ASP A . n A 1 135 LEU 135 115 115 LEU LEU A . n A 1 136 LYS 136 116 116 LYS LYS A . n A 1 137 ALA 137 117 117 ALA ALA A . n A 1 138 VAL 138 118 118 VAL VAL A . n A 1 139 ARG 139 119 119 ARG ARG A . n A 1 140 GLU 140 120 120 GLU GLU A . n A 1 141 ALA 141 121 121 ALA ALA A . n A 1 142 GLY 142 122 122 GLY GLY A . n A 1 143 PHE 143 123 123 PHE PHE A . n A 1 144 GLY 144 124 124 GLY GLY A . n A 1 145 ILE 145 125 125 ILE ILE A . n A 1 146 SER 146 126 126 SER SER A . n A 1 147 VAL 147 127 127 VAL VAL A . n A 1 148 PRO 148 128 128 PRO PRO A . n A 1 149 ASN 149 129 129 ASN ASN A . n A 1 150 GLY 150 130 130 GLY GLY A . n A 1 151 CYS 151 131 131 CYS CYS A . n A 1 152 GLU 152 132 132 GLU GLU A . n A 1 153 GLN 153 133 133 GLN GLN A . n A 1 154 THR 154 134 134 THR THR A . n A 1 155 ARG 155 135 135 ARG ARG A . n A 1 156 ALA 156 136 136 ALA ALA A . n A 1 157 VAL 157 137 137 VAL VAL A . n A 1 158 SER 158 138 138 SER SER A . n A 1 159 ASP 159 139 139 ASP ASP A . n A 1 160 TYR 160 140 140 TYR TYR A . n A 1 161 ILE 161 141 141 ILE ILE A . n A 1 162 THR 162 142 142 THR THR A . n A 1 163 THR 163 143 143 THR THR A . n A 1 164 LYS 164 144 144 LYS LYS A . n A 1 165 THR 165 145 145 THR THR A . n A 1 166 GLY 166 146 146 GLY GLY A . n A 1 167 GLY 167 147 147 GLY GLY A . n A 1 168 ASN 168 148 148 ASN ASN A . n A 1 169 GLY 169 149 149 GLY GLY A . n A 1 170 ALA 170 150 150 ALA ALA A . n A 1 171 VAL 171 151 151 VAL VAL A . n A 1 172 ARG 172 152 152 ARG ARG A . n A 1 173 GLU 173 153 153 GLU GLU A . n A 1 174 VAL 174 154 154 VAL VAL A . n A 1 175 CYS 175 155 155 CYS CYS A . n A 1 176 GLU 176 156 156 GLU GLU A . n A 1 177 LEU 177 157 157 LEU LEU A . n A 1 178 ILE 178 158 158 ILE ILE A . n A 1 179 LEU 179 159 159 LEU LEU A . n A 1 180 LYS 180 160 160 LYS LYS A . n A 1 181 ALA 181 161 161 ALA ALA A . n A 1 182 GLN 182 162 162 GLN GLN A . n A 1 183 ASN 183 163 163 ASN ASN A . n A 1 184 ASN 184 164 164 ASN ASN A . n A 1 185 PHE 185 165 165 PHE PHE A . n A 1 186 ASP 186 166 166 ASP ASP A . n A 1 187 ALA 187 167 167 ALA ALA A . n A 1 188 PHE 188 168 168 PHE PHE A . n A 1 189 ILE 189 169 169 ILE ILE A . n A 1 190 ALA 190 170 170 ALA ALA A . n A 1 191 THR 191 171 171 THR THR A . n A 1 192 PHE 192 172 172 PHE PHE A . n A 1 193 GLN 193 173 173 GLN GLN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT 1 1174 1174 CIT CIT A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.7.0032 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _cell.entry_id 4UMD _cell.length_a 86.394 _cell.length_b 86.394 _cell.length_c 40.802 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UMD _symmetry.space_group_name_H-M 'I 4' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 # _exptl.entry_id 4UMD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.81 _exptl_crystal.density_percent_sol 32.13 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '100 MM MG FORMATE,0.05 M BIS-TRIS PROPANE (PH 5.0), 16% W/V PEG 3350, 0.05 M CITRIC ACID' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2012-10-10 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR-H' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4UMD _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.29 _reflns.number_obs 6587 _reflns.number_all ? _reflns.percent_possible_obs 89.0 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.37 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.29 _reflns_shell.d_res_low 2.33 _reflns_shell.percent_possible_all 60.0 _reflns_shell.Rmerge_I_obs 0.36 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.10 _reflns_shell.pdbx_redundancy 2.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4UMD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6019 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.23 _refine.ls_d_res_high 2.29 _refine.ls_percent_reflns_obs 90.84 _refine.ls_R_factor_obs 0.18046 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17644 _refine.ls_R_factor_R_free 0.26739 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.5 _refine.ls_number_reflns_R_free 281 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.899 _refine.B_iso_mean 36.087 _refine.aniso_B[1][1] -0.46 _refine.aniso_B[2][2] -0.46 _refine.aniso_B[3][3] 0.92 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 3N1U' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.724 _refine.pdbx_overall_ESU_R_Free 0.308 _refine.overall_SU_ML 0.241 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 20.396 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1312 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 1385 _refine_hist.d_res_high 2.29 _refine_hist.d_res_low 43.23 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.019 ? 1339 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.322 1.977 ? 1803 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.928 5.000 ? 172 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.759 25.439 ? 57 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.390 15.000 ? 244 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.765 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.083 0.200 ? 209 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 986 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.299 0.853 ? 691 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.550 1.277 ? 862 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.387 0.961 ? 648 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.290 _refine_ls_shell.d_res_low 2.349 _refine_ls_shell.number_reflns_R_work 291 _refine_ls_shell.R_factor_R_work 0.274 _refine_ls_shell.percent_reflns_obs 60.57 _refine_ls_shell.R_factor_R_free 0.686 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 7 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 4UMD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4UMD _struct.title 'Crystal structure of 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase from Moraxella catarrhalis in complex with citrate' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4UMD _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, KDSC, HAD SUPERFAMILY' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code F1X4B5_MORCA _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession F1X4B5 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4UMD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 21 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 193 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession F1X4B5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 173 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 173 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4UMD MET A 1 ? UNP F1X4B5 ? ? 'expression tag' -19 1 1 4UMD GLY A 2 ? UNP F1X4B5 ? ? 'expression tag' -18 2 1 4UMD SER A 3 ? UNP F1X4B5 ? ? 'expression tag' -17 3 1 4UMD SER A 4 ? UNP F1X4B5 ? ? 'expression tag' -16 4 1 4UMD HIS A 5 ? UNP F1X4B5 ? ? 'expression tag' -15 5 1 4UMD HIS A 6 ? UNP F1X4B5 ? ? 'expression tag' -14 6 1 4UMD HIS A 7 ? UNP F1X4B5 ? ? 'expression tag' -13 7 1 4UMD HIS A 8 ? UNP F1X4B5 ? ? 'expression tag' -12 8 1 4UMD HIS A 9 ? UNP F1X4B5 ? ? 'expression tag' -11 9 1 4UMD HIS A 10 ? UNP F1X4B5 ? ? 'expression tag' -10 10 1 4UMD SER A 11 ? UNP F1X4B5 ? ? 'expression tag' -9 11 1 4UMD SER A 12 ? UNP F1X4B5 ? ? 'expression tag' -8 12 1 4UMD GLU A 13 ? UNP F1X4B5 ? ? 'expression tag' -7 13 1 4UMD ASN A 14 ? UNP F1X4B5 ? ? 'expression tag' -6 14 1 4UMD LEU A 15 ? UNP F1X4B5 ? ? 'expression tag' -5 15 1 4UMD TYR A 16 ? UNP F1X4B5 ? ? 'expression tag' -4 16 1 4UMD PHE A 17 ? UNP F1X4B5 ? ? 'expression tag' -3 17 1 4UMD GLN A 18 ? UNP F1X4B5 ? ? 'expression tag' -2 18 1 4UMD GLY A 19 ? UNP F1X4B5 ? ? 'expression tag' -1 19 1 4UMD HIS A 20 ? UNP F1X4B5 ? ? 'expression tag' 0 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -y,x,z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 4_555 y,-x,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 21 ? LYS A 29 ? MET A 1 LYS A 9 1 ? 9 HELX_P HELX_P2 2 TYR A 60 ? SER A 73 ? TYR A 40 SER A 53 1 ? 14 HELX_P HELX_P3 3 SER A 85 ? GLY A 96 ? SER A 65 GLY A 76 1 ? 12 HELX_P HELX_P4 4 ASP A 106 ? GLY A 119 ? ASP A 86 GLY A 99 1 ? 14 HELX_P HELX_P5 5 GLU A 121 ? SER A 123 ? GLU A 101 SER A 103 5 ? 3 HELX_P HELX_P6 6 ASP A 131 ? PRO A 133 ? ASP A 111 PRO A 113 5 ? 3 HELX_P HELX_P7 7 ASP A 134 ? ALA A 141 ? ASP A 114 ALA A 121 1 ? 8 HELX_P HELX_P8 8 CYS A 151 ? ALA A 156 ? CYS A 131 ALA A 136 1 ? 6 HELX_P HELX_P9 9 GLY A 169 ? GLN A 182 ? GLY A 149 GLN A 162 1 ? 14 HELX_P HELX_P10 10 ASN A 184 ? THR A 191 ? ASN A 164 THR A 171 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel AB 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 HIS A 99 ? ILE A 101 ? HIS A 79 ILE A 81 AA 2 ILE A 76 ? ILE A 80 ? ILE A 56 ILE A 60 AA 3 LEU A 33 ? MET A 36 ? LEU A 13 MET A 16 AA 4 CYS A 125 ? ILE A 128 ? CYS A 105 ILE A 108 AA 5 PHE A 143 ? SER A 146 ? PHE A 123 SER A 126 AA 6 TYR A 160 ? ILE A 161 ? TYR A 140 ILE A 141 AB 1 ILE A 48 ? TYR A 49 ? ILE A 28 TYR A 29 AB 2 GLU A 55 ? THR A 56 ? GLU A 35 THR A 36 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N HIS A 99 ? N HIS A 79 O LEU A 77 ? O LEU A 57 AA 2 3 N ALA A 78 ? N ALA A 58 O PHE A 34 ? O PHE A 14 AA 3 4 N ALA A 35 ? N ALA A 15 O ALA A 126 ? O ALA A 106 AA 4 5 N TYR A 127 ? N TYR A 107 O PHE A 143 ? O PHE A 123 AA 5 6 N SER A 146 ? N SER A 126 O TYR A 160 ? O TYR A 140 AB 1 2 N ILE A 48 ? N ILE A 28 O THR A 56 ? O THR A 36 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CIT _struct_site.pdbx_auth_seq_id 1174 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE CIT A 1174' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ASP A 37 ? ASP A 17 . ? 1_555 ? 2 AC1 10 VAL A 38 ? VAL A 18 . ? 1_555 ? 3 AC1 10 ASP A 39 ? ASP A 19 . ? 1_555 ? 4 AC1 10 THR A 81 ? THR A 61 . ? 1_555 ? 5 AC1 10 GLY A 82 ? GLY A 62 . ? 1_555 ? 6 AC1 10 LYS A 107 ? LYS A 87 . ? 1_555 ? 7 AC1 10 ASP A 130 ? ASP A 110 . ? 1_555 ? 8 AC1 10 ASP A 131 ? ASP A 111 . ? 1_555 ? 9 AC1 10 PRO A 133 ? PRO A 113 . ? 1_555 ? 10 AC1 10 ASP A 134 ? ASP A 114 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 115 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 115 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 115 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.91 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 14.61 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 18 ? ? -98.96 -69.32 2 1 THR A 95 ? ? -28.56 -52.49 3 1 ASN A 148 ? ? -142.52 24.25 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2003 ? C HOH . 2 1 A HOH 2022 ? C HOH . 3 1 A HOH 2023 ? C HOH . 4 1 A HOH 2060 ? C HOH . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -4.9340 -16.7780 1.2330 0.1054 0.0909 0.4470 0.0203 0.0150 0.0091 4.3719 1.9550 1.7203 1.6030 1.6425 0.6058 -0.0744 0.2893 -0.0657 -0.1024 0.0321 0.1256 0.0400 0.0876 0.0422 'X-RAY DIFFRACTION' 2 ? refined -10.6010 -18.2000 7.6980 0.1727 0.1827 0.5904 0.0177 0.0028 0.0178 0.5567 1.1305 3.5227 0.5990 -0.0276 1.0270 0.0914 -0.1532 0.0245 0.1475 -0.0907 0.1515 -0.0523 -0.2110 -0.0007 'X-RAY DIFFRACTION' 3 ? refined -1.7990 -29.6840 2.0570 0.2280 0.1065 0.6127 -0.0030 -0.0047 0.0172 4.7898 0.3298 1.9581 1.0128 -0.5842 0.2592 -0.0909 0.0143 -0.7303 0.0940 -0.0051 -0.1350 0.1251 0.0166 0.0959 'X-RAY DIFFRACTION' 4 ? refined -10.7160 -18.5250 -7.1790 0.2122 0.2205 0.5330 0.0351 -0.0163 -0.0089 5.3363 0.0919 0.3148 0.3136 0.2362 0.0439 0.1062 0.5159 0.1161 -0.0794 -0.0627 0.0431 -0.0372 0.0003 -0.0435 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 40 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 41 ? ? A 80 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 81 ? ? A 120 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 121 ? ? A 173 ? ? ? ? # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2060 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 8.50 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -19 ? A MET 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLU -7 ? A GLU 13 14 1 Y 1 A ASN -6 ? A ASN 14 15 1 Y 1 A LEU -5 ? A LEU 15 16 1 Y 1 A TYR -4 ? A TYR 16 17 1 Y 1 A PHE -3 ? A PHE 17 18 1 Y 1 A GLN -2 ? A GLN 18 19 1 Y 1 A GLY -1 ? A GLY 19 20 1 Y 1 A HIS 0 ? A HIS 20 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CIT C1 C N N 74 CIT O1 O N N 75 CIT O2 O N N 76 CIT C2 C N N 77 CIT C3 C N N 78 CIT O7 O N N 79 CIT C4 C N N 80 CIT C5 C N N 81 CIT O3 O N N 82 CIT O4 O N N 83 CIT C6 C N N 84 CIT O5 O N N 85 CIT O6 O N N 86 CIT HO2 H N N 87 CIT H21 H N N 88 CIT H22 H N N 89 CIT HO7 H N N 90 CIT H41 H N N 91 CIT H42 H N N 92 CIT HO4 H N N 93 CIT HO6 H N N 94 CYS N N N N 95 CYS CA C N R 96 CYS C C N N 97 CYS O O N N 98 CYS CB C N N 99 CYS SG S N N 100 CYS OXT O N N 101 CYS H H N N 102 CYS H2 H N N 103 CYS HA H N N 104 CYS HB2 H N N 105 CYS HB3 H N N 106 CYS HG H N N 107 CYS HXT H N N 108 GLN N N N N 109 GLN CA C N S 110 GLN C C N N 111 GLN O O N N 112 GLN CB C N N 113 GLN CG C N N 114 GLN CD C N N 115 GLN OE1 O N N 116 GLN NE2 N N N 117 GLN OXT O N N 118 GLN H H N N 119 GLN H2 H N N 120 GLN HA H N N 121 GLN HB2 H N N 122 GLN HB3 H N N 123 GLN HG2 H N N 124 GLN HG3 H N N 125 GLN HE21 H N N 126 GLN HE22 H N N 127 GLN HXT H N N 128 GLU N N N N 129 GLU CA C N S 130 GLU C C N N 131 GLU O O N N 132 GLU CB C N N 133 GLU CG C N N 134 GLU CD C N N 135 GLU OE1 O N N 136 GLU OE2 O N N 137 GLU OXT O N N 138 GLU H H N N 139 GLU H2 H N N 140 GLU HA H N N 141 GLU HB2 H N N 142 GLU HB3 H N N 143 GLU HG2 H N N 144 GLU HG3 H N N 145 GLU HE2 H N N 146 GLU HXT H N N 147 GLY N N N N 148 GLY CA C N N 149 GLY C C N N 150 GLY O O N N 151 GLY OXT O N N 152 GLY H H N N 153 GLY H2 H N N 154 GLY HA2 H N N 155 GLY HA3 H N N 156 GLY HXT H N N 157 HIS N N N N 158 HIS CA C N S 159 HIS C C N N 160 HIS O O N N 161 HIS CB C N N 162 HIS CG C Y N 163 HIS ND1 N Y N 164 HIS CD2 C Y N 165 HIS CE1 C Y N 166 HIS NE2 N Y N 167 HIS OXT O N N 168 HIS H H N N 169 HIS H2 H N N 170 HIS HA H N N 171 HIS HB2 H N N 172 HIS HB3 H N N 173 HIS HD1 H N N 174 HIS HD2 H N N 175 HIS HE1 H N N 176 HIS HE2 H N N 177 HIS HXT H N N 178 HOH O O N N 179 HOH H1 H N N 180 HOH H2 H N N 181 ILE N N N N 182 ILE CA C N S 183 ILE C C N N 184 ILE O O N N 185 ILE CB C N S 186 ILE CG1 C N N 187 ILE CG2 C N N 188 ILE CD1 C N N 189 ILE OXT O N N 190 ILE H H N N 191 ILE H2 H N N 192 ILE HA H N N 193 ILE HB H N N 194 ILE HG12 H N N 195 ILE HG13 H N N 196 ILE HG21 H N N 197 ILE HG22 H N N 198 ILE HG23 H N N 199 ILE HD11 H N N 200 ILE HD12 H N N 201 ILE HD13 H N N 202 ILE HXT H N N 203 LEU N N N N 204 LEU CA C N S 205 LEU C C N N 206 LEU O O N N 207 LEU CB C N N 208 LEU CG C N N 209 LEU CD1 C N N 210 LEU CD2 C N N 211 LEU OXT O N N 212 LEU H H N N 213 LEU H2 H N N 214 LEU HA H N N 215 LEU HB2 H N N 216 LEU HB3 H N N 217 LEU HG H N N 218 LEU HD11 H N N 219 LEU HD12 H N N 220 LEU HD13 H N N 221 LEU HD21 H N N 222 LEU HD22 H N N 223 LEU HD23 H N N 224 LEU HXT H N N 225 LYS N N N N 226 LYS CA C N S 227 LYS C C N N 228 LYS O O N N 229 LYS CB C N N 230 LYS CG C N N 231 LYS CD C N N 232 LYS CE C N N 233 LYS NZ N N N 234 LYS OXT O N N 235 LYS H H N N 236 LYS H2 H N N 237 LYS HA H N N 238 LYS HB2 H N N 239 LYS HB3 H N N 240 LYS HG2 H N N 241 LYS HG3 H N N 242 LYS HD2 H N N 243 LYS HD3 H N N 244 LYS HE2 H N N 245 LYS HE3 H N N 246 LYS HZ1 H N N 247 LYS HZ2 H N N 248 LYS HZ3 H N N 249 LYS HXT H N N 250 MET N N N N 251 MET CA C N S 252 MET C C N N 253 MET O O N N 254 MET CB C N N 255 MET CG C N N 256 MET SD S N N 257 MET CE C N N 258 MET OXT O N N 259 MET H H N N 260 MET H2 H N N 261 MET HA H N N 262 MET HB2 H N N 263 MET HB3 H N N 264 MET HG2 H N N 265 MET HG3 H N N 266 MET HE1 H N N 267 MET HE2 H N N 268 MET HE3 H N N 269 MET HXT H N N 270 PHE N N N N 271 PHE CA C N S 272 PHE C C N N 273 PHE O O N N 274 PHE CB C N N 275 PHE CG C Y N 276 PHE CD1 C Y N 277 PHE CD2 C Y N 278 PHE CE1 C Y N 279 PHE CE2 C Y N 280 PHE CZ C Y N 281 PHE OXT O N N 282 PHE H H N N 283 PHE H2 H N N 284 PHE HA H N N 285 PHE HB2 H N N 286 PHE HB3 H N N 287 PHE HD1 H N N 288 PHE HD2 H N N 289 PHE HE1 H N N 290 PHE HE2 H N N 291 PHE HZ H N N 292 PHE HXT H N N 293 PRO N N N N 294 PRO CA C N S 295 PRO C C N N 296 PRO O O N N 297 PRO CB C N N 298 PRO CG C N N 299 PRO CD C N N 300 PRO OXT O N N 301 PRO H H N N 302 PRO HA H N N 303 PRO HB2 H N N 304 PRO HB3 H N N 305 PRO HG2 H N N 306 PRO HG3 H N N 307 PRO HD2 H N N 308 PRO HD3 H N N 309 PRO HXT H N N 310 SER N N N N 311 SER CA C N S 312 SER C C N N 313 SER O O N N 314 SER CB C N N 315 SER OG O N N 316 SER OXT O N N 317 SER H H N N 318 SER H2 H N N 319 SER HA H N N 320 SER HB2 H N N 321 SER HB3 H N N 322 SER HG H N N 323 SER HXT H N N 324 THR N N N N 325 THR CA C N S 326 THR C C N N 327 THR O O N N 328 THR CB C N R 329 THR OG1 O N N 330 THR CG2 C N N 331 THR OXT O N N 332 THR H H N N 333 THR H2 H N N 334 THR HA H N N 335 THR HB H N N 336 THR HG1 H N N 337 THR HG21 H N N 338 THR HG22 H N N 339 THR HG23 H N N 340 THR HXT H N N 341 TYR N N N N 342 TYR CA C N S 343 TYR C C N N 344 TYR O O N N 345 TYR CB C N N 346 TYR CG C Y N 347 TYR CD1 C Y N 348 TYR CD2 C Y N 349 TYR CE1 C Y N 350 TYR CE2 C Y N 351 TYR CZ C Y N 352 TYR OH O N N 353 TYR OXT O N N 354 TYR H H N N 355 TYR H2 H N N 356 TYR HA H N N 357 TYR HB2 H N N 358 TYR HB3 H N N 359 TYR HD1 H N N 360 TYR HD2 H N N 361 TYR HE1 H N N 362 TYR HE2 H N N 363 TYR HH H N N 364 TYR HXT H N N 365 VAL N N N N 366 VAL CA C N S 367 VAL C C N N 368 VAL O O N N 369 VAL CB C N N 370 VAL CG1 C N N 371 VAL CG2 C N N 372 VAL OXT O N N 373 VAL H H N N 374 VAL H2 H N N 375 VAL HA H N N 376 VAL HB H N N 377 VAL HG11 H N N 378 VAL HG12 H N N 379 VAL HG13 H N N 380 VAL HG21 H N N 381 VAL HG22 H N N 382 VAL HG23 H N N 383 VAL HXT H N N 384 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CIT C1 O1 doub N N 70 CIT C1 O2 sing N N 71 CIT C1 C2 sing N N 72 CIT O2 HO2 sing N N 73 CIT C2 C3 sing N N 74 CIT C2 H21 sing N N 75 CIT C2 H22 sing N N 76 CIT C3 O7 sing N N 77 CIT C3 C4 sing N N 78 CIT C3 C6 sing N N 79 CIT O7 HO7 sing N N 80 CIT C4 C5 sing N N 81 CIT C4 H41 sing N N 82 CIT C4 H42 sing N N 83 CIT C5 O3 doub N N 84 CIT C5 O4 sing N N 85 CIT O4 HO4 sing N N 86 CIT C6 O5 doub N N 87 CIT C6 O6 sing N N 88 CIT O6 HO6 sing N N 89 CYS N CA sing N N 90 CYS N H sing N N 91 CYS N H2 sing N N 92 CYS CA C sing N N 93 CYS CA CB sing N N 94 CYS CA HA sing N N 95 CYS C O doub N N 96 CYS C OXT sing N N 97 CYS CB SG sing N N 98 CYS CB HB2 sing N N 99 CYS CB HB3 sing N N 100 CYS SG HG sing N N 101 CYS OXT HXT sing N N 102 GLN N CA sing N N 103 GLN N H sing N N 104 GLN N H2 sing N N 105 GLN CA C sing N N 106 GLN CA CB sing N N 107 GLN CA HA sing N N 108 GLN C O doub N N 109 GLN C OXT sing N N 110 GLN CB CG sing N N 111 GLN CB HB2 sing N N 112 GLN CB HB3 sing N N 113 GLN CG CD sing N N 114 GLN CG HG2 sing N N 115 GLN CG HG3 sing N N 116 GLN CD OE1 doub N N 117 GLN CD NE2 sing N N 118 GLN NE2 HE21 sing N N 119 GLN NE2 HE22 sing N N 120 GLN OXT HXT sing N N 121 GLU N CA sing N N 122 GLU N H sing N N 123 GLU N H2 sing N N 124 GLU CA C sing N N 125 GLU CA CB sing N N 126 GLU CA HA sing N N 127 GLU C O doub N N 128 GLU C OXT sing N N 129 GLU CB CG sing N N 130 GLU CB HB2 sing N N 131 GLU CB HB3 sing N N 132 GLU CG CD sing N N 133 GLU CG HG2 sing N N 134 GLU CG HG3 sing N N 135 GLU CD OE1 doub N N 136 GLU CD OE2 sing N N 137 GLU OE2 HE2 sing N N 138 GLU OXT HXT sing N N 139 GLY N CA sing N N 140 GLY N H sing N N 141 GLY N H2 sing N N 142 GLY CA C sing N N 143 GLY CA HA2 sing N N 144 GLY CA HA3 sing N N 145 GLY C O doub N N 146 GLY C OXT sing N N 147 GLY OXT HXT sing N N 148 HIS N CA sing N N 149 HIS N H sing N N 150 HIS N H2 sing N N 151 HIS CA C sing N N 152 HIS CA CB sing N N 153 HIS CA HA sing N N 154 HIS C O doub N N 155 HIS C OXT sing N N 156 HIS CB CG sing N N 157 HIS CB HB2 sing N N 158 HIS CB HB3 sing N N 159 HIS CG ND1 sing Y N 160 HIS CG CD2 doub Y N 161 HIS ND1 CE1 doub Y N 162 HIS ND1 HD1 sing N N 163 HIS CD2 NE2 sing Y N 164 HIS CD2 HD2 sing N N 165 HIS CE1 NE2 sing Y N 166 HIS CE1 HE1 sing N N 167 HIS NE2 HE2 sing N N 168 HIS OXT HXT sing N N 169 HOH O H1 sing N N 170 HOH O H2 sing N N 171 ILE N CA sing N N 172 ILE N H sing N N 173 ILE N H2 sing N N 174 ILE CA C sing N N 175 ILE CA CB sing N N 176 ILE CA HA sing N N 177 ILE C O doub N N 178 ILE C OXT sing N N 179 ILE CB CG1 sing N N 180 ILE CB CG2 sing N N 181 ILE CB HB sing N N 182 ILE CG1 CD1 sing N N 183 ILE CG1 HG12 sing N N 184 ILE CG1 HG13 sing N N 185 ILE CG2 HG21 sing N N 186 ILE CG2 HG22 sing N N 187 ILE CG2 HG23 sing N N 188 ILE CD1 HD11 sing N N 189 ILE CD1 HD12 sing N N 190 ILE CD1 HD13 sing N N 191 ILE OXT HXT sing N N 192 LEU N CA sing N N 193 LEU N H sing N N 194 LEU N H2 sing N N 195 LEU CA C sing N N 196 LEU CA CB sing N N 197 LEU CA HA sing N N 198 LEU C O doub N N 199 LEU C OXT sing N N 200 LEU CB CG sing N N 201 LEU CB HB2 sing N N 202 LEU CB HB3 sing N N 203 LEU CG CD1 sing N N 204 LEU CG CD2 sing N N 205 LEU CG HG sing N N 206 LEU CD1 HD11 sing N N 207 LEU CD1 HD12 sing N N 208 LEU CD1 HD13 sing N N 209 LEU CD2 HD21 sing N N 210 LEU CD2 HD22 sing N N 211 LEU CD2 HD23 sing N N 212 LEU OXT HXT sing N N 213 LYS N CA sing N N 214 LYS N H sing N N 215 LYS N H2 sing N N 216 LYS CA C sing N N 217 LYS CA CB sing N N 218 LYS CA HA sing N N 219 LYS C O doub N N 220 LYS C OXT sing N N 221 LYS CB CG sing N N 222 LYS CB HB2 sing N N 223 LYS CB HB3 sing N N 224 LYS CG CD sing N N 225 LYS CG HG2 sing N N 226 LYS CG HG3 sing N N 227 LYS CD CE sing N N 228 LYS CD HD2 sing N N 229 LYS CD HD3 sing N N 230 LYS CE NZ sing N N 231 LYS CE HE2 sing N N 232 LYS CE HE3 sing N N 233 LYS NZ HZ1 sing N N 234 LYS NZ HZ2 sing N N 235 LYS NZ HZ3 sing N N 236 LYS OXT HXT sing N N 237 MET N CA sing N N 238 MET N H sing N N 239 MET N H2 sing N N 240 MET CA C sing N N 241 MET CA CB sing N N 242 MET CA HA sing N N 243 MET C O doub N N 244 MET C OXT sing N N 245 MET CB CG sing N N 246 MET CB HB2 sing N N 247 MET CB HB3 sing N N 248 MET CG SD sing N N 249 MET CG HG2 sing N N 250 MET CG HG3 sing N N 251 MET SD CE sing N N 252 MET CE HE1 sing N N 253 MET CE HE2 sing N N 254 MET CE HE3 sing N N 255 MET OXT HXT sing N N 256 PHE N CA sing N N 257 PHE N H sing N N 258 PHE N H2 sing N N 259 PHE CA C sing N N 260 PHE CA CB sing N N 261 PHE CA HA sing N N 262 PHE C O doub N N 263 PHE C OXT sing N N 264 PHE CB CG sing N N 265 PHE CB HB2 sing N N 266 PHE CB HB3 sing N N 267 PHE CG CD1 doub Y N 268 PHE CG CD2 sing Y N 269 PHE CD1 CE1 sing Y N 270 PHE CD1 HD1 sing N N 271 PHE CD2 CE2 doub Y N 272 PHE CD2 HD2 sing N N 273 PHE CE1 CZ doub Y N 274 PHE CE1 HE1 sing N N 275 PHE CE2 CZ sing Y N 276 PHE CE2 HE2 sing N N 277 PHE CZ HZ sing N N 278 PHE OXT HXT sing N N 279 PRO N CA sing N N 280 PRO N CD sing N N 281 PRO N H sing N N 282 PRO CA C sing N N 283 PRO CA CB sing N N 284 PRO CA HA sing N N 285 PRO C O doub N N 286 PRO C OXT sing N N 287 PRO CB CG sing N N 288 PRO CB HB2 sing N N 289 PRO CB HB3 sing N N 290 PRO CG CD sing N N 291 PRO CG HG2 sing N N 292 PRO CG HG3 sing N N 293 PRO CD HD2 sing N N 294 PRO CD HD3 sing N N 295 PRO OXT HXT sing N N 296 SER N CA sing N N 297 SER N H sing N N 298 SER N H2 sing N N 299 SER CA C sing N N 300 SER CA CB sing N N 301 SER CA HA sing N N 302 SER C O doub N N 303 SER C OXT sing N N 304 SER CB OG sing N N 305 SER CB HB2 sing N N 306 SER CB HB3 sing N N 307 SER OG HG sing N N 308 SER OXT HXT sing N N 309 THR N CA sing N N 310 THR N H sing N N 311 THR N H2 sing N N 312 THR CA C sing N N 313 THR CA CB sing N N 314 THR CA HA sing N N 315 THR C O doub N N 316 THR C OXT sing N N 317 THR CB OG1 sing N N 318 THR CB CG2 sing N N 319 THR CB HB sing N N 320 THR OG1 HG1 sing N N 321 THR CG2 HG21 sing N N 322 THR CG2 HG22 sing N N 323 THR CG2 HG23 sing N N 324 THR OXT HXT sing N N 325 TYR N CA sing N N 326 TYR N H sing N N 327 TYR N H2 sing N N 328 TYR CA C sing N N 329 TYR CA CB sing N N 330 TYR CA HA sing N N 331 TYR C O doub N N 332 TYR C OXT sing N N 333 TYR CB CG sing N N 334 TYR CB HB2 sing N N 335 TYR CB HB3 sing N N 336 TYR CG CD1 doub Y N 337 TYR CG CD2 sing Y N 338 TYR CD1 CE1 sing Y N 339 TYR CD1 HD1 sing N N 340 TYR CD2 CE2 doub Y N 341 TYR CD2 HD2 sing N N 342 TYR CE1 CZ doub Y N 343 TYR CE1 HE1 sing N N 344 TYR CE2 CZ sing Y N 345 TYR CE2 HE2 sing N N 346 TYR CZ OH sing N N 347 TYR OH HH sing N N 348 TYR OXT HXT sing N N 349 VAL N CA sing N N 350 VAL N H sing N N 351 VAL N H2 sing N N 352 VAL CA C sing N N 353 VAL CA CB sing N N 354 VAL CA HA sing N N 355 VAL C O doub N N 356 VAL C OXT sing N N 357 VAL CB CG1 sing N N 358 VAL CB CG2 sing N N 359 VAL CB HB sing N N 360 VAL CG1 HG11 sing N N 361 VAL CG1 HG12 sing N N 362 VAL CG1 HG13 sing N N 363 VAL CG2 HG21 sing N N 364 VAL CG2 HG22 sing N N 365 VAL CG2 HG23 sing N N 366 VAL OXT HXT sing N N 367 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3N1U _pdbx_initial_refinement_model.details 'PDB ENTRY 3N1U' # _atom_sites.entry_id 4UMD _atom_sites.fract_transf_matrix[1][1] 0.011575 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011575 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024509 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_