HEADER NUCLEAR RECEPTOR 19-MAY-14 4UMM TITLE THE CRYO-EM STRUCTURE OF THE PALINDROMIC DNA-BOUND USP-ECR NUCLEAR TITLE 2 RECEPTOR REVEALS AN ASYMMETRIC ORGANIZATION WITH ALLOSTERIC DOMAIN TITLE 3 POSITIONING COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECR-USP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*CP*AP*AP*GP*GP*GP*TP*TP*CP*AP*AP*TP*GP*CP COMPND 7 *AP*CP*TP*TP*GP*TP)-3'; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 5'-D(*DGP*AP*CP*AP*AP*GP*TP*GP*CP*AP*TP*TP*GP*DAP COMPND 12 *AP*CP*CP*CP*TP*T)-3'; COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: ECDYSONE RECEPTOR; COMPND 17 CHAIN: E; COMPND 18 SYNONYM: 20-HYDROXY-ECDYSONE RECEPTOR, 20E RECEPTOR, ECRH, COMPND 19 ECDYSTEROID RECEPTOR, HVECR, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP H COMPND 20 MEMBER 1; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: GENE REGULATION PROTEIN; COMPND 24 CHAIN: F; COMPND 25 SYNONYM: ECR-USP; COMPND 26 ENGINEERED: YES; COMPND 27 MOL_ID: 6; COMPND 28 MOLECULE: ECDYSONE RECEPTOR; COMPND 29 CHAIN: G; COMPND 30 SYNONYM: 20-HYDROXY-ECDYSONE RECEPTOR, 20E RECEPTOR, ECRH, COMPND 31 ECDYSTEROID RECEPTOR, HVECR, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP H COMPND 32 MEMBER 1; COMPND 33 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELIOTHIS VIRESCENS; SOURCE 3 ORGANISM_COMMON: TOBACCO BUDWORM; SOURCE 4 ORGANISM_TAXID: 7102; SOURCE 5 ORGAN: NUCLEOUS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: HELIOTHIS VIRESCENS; SOURCE 18 ORGANISM_TAXID: 7102; SOURCE 19 ORGAN: NUCLEOUS; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 MOL_ID: 5; SOURCE 23 ORGANISM_SCIENTIFIC: HELIOTHIS VIRESCENS; SOURCE 24 ORGANISM_COMMON: TOBACCO BUDWORM; SOURCE 25 ORGANISM_TAXID: 7102; SOURCE 26 ORGAN: NUCLEOUS; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 28 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 29 MOL_ID: 6; SOURCE 30 ORGANISM_SCIENTIFIC: HELIOTHIS VIRESCENS; SOURCE 31 ORGANISM_COMMON: TOBACCO BUDWORM; SOURCE 32 ORGANISM_TAXID: 7102; SOURCE 33 ORGAN: NUCLEOUS; SOURCE 34 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 35 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION, ECDYSONE, USP-ECR, DNA RESPONSE KEYWDS 2 ELEMENT, ALLOSTERY, CRYO ELECTRON MICROSCOPY EXPDTA ELECTRON MICROSCOPY AUTHOR M.MALETTA,I.ORLOV,D.MORAS,I.M.L.BILLAS,B.P.KLAHOLZ REVDAT 3 03-OCT-18 4UMM 1 REMARK REVDAT 2 02-JUL-14 4UMM 1 JRNL REMARK REVDAT 1 25-JUN-14 4UMM 0 JRNL AUTH M.MALETTA,I.ORLOV,D.MORAS,I.M.L.BILLAS,B.P.KLAHOLZ JRNL TITL THE PALINDROMIC DNA-BOUND USP-ECR NUCLEAR RECEPTOR ADOPTS AN JRNL TITL 2 ASYMMETRIC ORGANIZATION WITH ALLOSTERIC DOMAIN POSITIONING. JRNL REF NAT.COMMUN. V. 5 4139 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 24942373 JRNL DOI 10.1038/NCOMMS5139 REMARK 2 REMARK 2 RESOLUTION. 11.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : IMAGIC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1R1K REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--RIGID BODY REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 11.60 REMARK 3 NUMBER OF PARTICLES : 50000 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD REMARK 3 -2631. (DEPOSITION ID: 12447). REMARK 4 REMARK 4 4UMM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290060653. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : BRUNO P. KLAHOLZ REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.10 REMARK 245 SAMPLE SUPPORT DETAILS : CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : VITRIFICATION 1 -- CRYOGEN- REMARK 245 ETHANE, HUMIDITY- 90, REMARK 245 TEMPERATURE- 120, INSTRUMENT- REMARK 245 FEI VITROBOT MARK IV, METHOD- 2 REMARK 245 SECONDS, FORCE 4, REMARK 245 SAMPLE BUFFER : 10 MM TRIS PH 7.5, 100 MM NACL, REMARK 245 10 MM MGCL2, 10 MM TCEP REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 20-NOV-09 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 245 DETECTOR TYPE : FEI EAGLE (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 20.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 59000 REMARK 245 CALIBRATED MAGNIFICATION : 64244 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 100 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA F 203 REMARK 465 ALA F 204 REMARK 465 GLU F 305 REMARK 465 ARG F 306 REMARK 465 ASP F 307 REMARK 465 GLY F 308 REMARK 465 VAL F 309 REMARK 465 ASP F 310 REMARK 465 GLY F 311 REMARK 465 THR F 312 REMARK 465 GLY F 313 REMARK 465 ASN F 314 REMARK 465 ASN F 456 REMARK 465 HIS F 457 REMARK 465 ALA F 458 REMARK 465 PRO F 459 REMARK 465 PRO F 460 REMARK 465 ILE F 461 REMARK 465 ASP F 462 REMARK 465 THR F 463 REMARK 465 ASN F 464 REMARK 465 MET F 465 REMARK 465 MET F 466 REMARK 465 GLY G 267 REMARK 465 SER G 268 REMARK 465 HIS G 269 REMARK 465 MET G 270 REMARK 465 ALA G 271 REMARK 465 SER G 272 REMARK 465 MET G 273 REMARK 465 THR G 274 REMARK 465 GLY G 275 REMARK 465 GLY G 276 REMARK 465 GLN G 277 REMARK 465 GLN G 278 REMARK 465 MET G 279 REMARK 465 GLY G 280 REMARK 465 ARG G 281 REMARK 465 ASP G 282 REMARK 465 PRO G 283 REMARK 465 LEU G 284 REMARK 465 LYS G 285 REMARK 465 ASN G 286 REMARK 465 GLN G 324 REMARK 465 SER G 325 REMARK 465 ASP G 326 REMARK 465 GLU G 327 REMARK 465 ASP G 328 REMARK 465 ASP G 329 REMARK 465 GLU G 330 REMARK 465 ASP G 530 REMARK 465 VAL G 531 REMARK 465 ALA G 532 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC C 1 O5' REMARK 470 DG D 1 O5' REMARK 470 GLU F 304 CG CD OE1 OE2 REMARK 470 ARG F 315 CG CD NE CZ NH1 NH2 REMARK 470 GLN G 321 CG CD OE1 NE2 REMARK 470 THR G 322 CB OG1 CG2 REMARK 470 TRP G 323 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 470 TRP G 323 CZ2 CZ3 CH2 REMARK 470 ARG G 337 CG CD NE CZ NH1 NH2 REMARK 470 LYS G 517 CG CD CE NZ REMARK 470 VAL G 528 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA PRO F 268 C SER F 409 0.51 REMARK 500 CA PRO F 268 N GLU F 410 1.22 REMARK 500 CA PRO F 268 CA SER F 409 1.49 REMARK 500 CA PRO F 268 O SER F 409 1.60 REMARK 500 O SER G 478 N SER G 480 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA D 4 O3' DA D 4 C3' -0.071 REMARK 500 DT D 11 C5 DT D 11 C7 0.041 REMARK 500 PRO F 268 N PRO F 268 CA 28.171 REMARK 500 PRO F 268 CA PRO F 268 CB 26.996 REMARK 500 PRO F 268 CA PRO F 268 C 28.699 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 4 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 DG C 5 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DT C 8 C5 - C4 - O4 ANGL. DEV. = -4.8 DEGREES REMARK 500 DC C 9 OP1 - P - OP2 ANGL. DEV. = 11.7 DEGREES REMARK 500 DT C 18 O4' - C1' - N1 ANGL. DEV. = -6.2 DEGREES REMARK 500 DT C 18 N3 - C2 - O2 ANGL. DEV. = -4.6 DEGREES REMARK 500 DG D 1 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DA D 4 C3' - O3' - P ANGL. DEV. = 8.6 DEGREES REMARK 500 DA D 5 C3' - O3' - P ANGL. DEV. = 7.2 DEGREES REMARK 500 DG D 6 O5' - P - OP2 ANGL. DEV. = -6.3 DEGREES REMARK 500 DG D 6 N3 - C2 - N2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DT D 7 N3 - C4 - O4 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA D 10 N1 - C6 - N6 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT D 11 OP1 - P - OP2 ANGL. DEV. = 9.8 DEGREES REMARK 500 DT D 12 N3 - C2 - O2 ANGL. DEV. = -4.0 DEGREES REMARK 500 DG D 13 O3' - P - OP2 ANGL. DEV. = 7.4 DEGREES REMARK 500 DA D 14 O4' - C1' - N9 ANGL. DEV. = -4.9 DEGREES REMARK 500 DA D 15 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC D 16 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DC D 18 O4' - C1' - N1 ANGL. DEV. = -7.7 DEGREES REMARK 500 DT D 19 C4 - C5 - C7 ANGL. DEV. = 4.6 DEGREES REMARK 500 PRO F 268 CA - N - CD ANGL. DEV. = -73.9 DEGREES REMARK 500 PRO F 268 CB - CA - C ANGL. DEV. = 108.4 DEGREES REMARK 500 PRO F 268 N - CA - CB ANGL. DEV. = -98.6 DEGREES REMARK 500 PRO F 268 CA - CB - CG ANGL. DEV. = -29.1 DEGREES REMARK 500 PRO F 268 N - CA - C ANGL. DEV. = 107.5 DEGREES REMARK 500 PRO F 268 CA - C - O ANGL. DEV. = -73.7 DEGREES REMARK 500 PRO F 268 CA - C - N ANGL. DEV. = 51.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 151 -121.52 -132.47 REMARK 500 ASP A 158 -166.34 -128.42 REMARK 500 ASN E 160 30.20 75.90 REMARK 500 PHE E 185 -125.49 -116.17 REMARK 500 ALA E 188 39.18 -165.83 REMARK 500 LYS E 226 -79.19 -51.85 REMARK 500 ASP F 222 77.82 -108.02 REMARK 500 PRO F 223 62.79 -59.30 REMARK 500 ASN F 237 41.92 -109.12 REMARK 500 PRO F 239 153.39 -42.30 REMARK 500 PRO F 268 -168.93 109.27 REMARK 500 HIS F 269 -24.58 93.78 REMARK 500 LEU F 273 158.15 -45.85 REMARK 500 GLU F 300 -72.22 -55.21 REMARK 500 PHE F 301 9.06 -54.12 REMARK 500 THR F 316 -43.41 -152.80 REMARK 500 SER F 350 -65.64 -94.21 REMARK 500 LEU F 352 -68.22 -105.66 REMARK 500 ARG F 407 32.33 -159.59 REMARK 500 SER F 408 -12.82 -43.74 REMARK 500 HIS F 439 21.61 49.68 REMARK 500 ALA F 442 45.48 -84.59 REMARK 500 ASP F 443 -79.87 -19.45 REMARK 500 ARG F 451 -75.11 -51.43 REMARK 500 PRO G 289 -136.23 -94.30 REMARK 500 THR G 291 -167.91 -62.15 REMARK 500 SER G 312 152.88 -41.89 REMARK 500 THR G 322 123.70 152.15 REMARK 500 ARG G 409 -80.41 -62.14 REMARK 500 LYS G 410 -53.74 -25.21 REMARK 500 ALA G 414 -19.03 -49.78 REMARK 500 MET G 431 74.67 55.49 REMARK 500 HIS G 436 -72.97 -46.51 REMARK 500 GLN G 454 54.21 -109.07 REMARK 500 ALA G 479 56.96 -54.59 REMARK 500 VAL G 485 -37.57 -35.37 REMARK 500 SER G 510 9.72 -60.09 REMARK 500 ASN G 515 77.58 46.16 REMARK 500 LYS G 517 103.93 -50.22 REMARK 500 PRO G 519 132.44 -33.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE F 267 PRO F 268 49.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO F 268 -142.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P1A G 1530 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPH F 1456 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-2631 RELATED DB: EMDB DBREF 4UMM A 110 187 PDB 4UMM 4UMM 110 187 DBREF 4UMM C 1 20 PDB 4UMM 4UMM 1 20 DBREF 4UMM D 1 20 PDB 4UMM 4UMM 1 20 DBREF 4UMM E 141 227 UNP O18473 ECR_HELVI 157 243 DBREF 4UMM F 203 466 UNP Q7SIF6 Q7SIF6_HELVI 1 264 DBREF 4UMM G 284 532 UNP O18473 ECR_HELVI 305 550 SEQADV 4UMM MET E 193 UNP O18473 ILE 209 CONFLICT SEQADV 4UMM GLY G 267 UNP O18473 EXPRESSION TAG SEQADV 4UMM SER G 268 UNP O18473 EXPRESSION TAG SEQADV 4UMM HIS G 269 UNP O18473 EXPRESSION TAG SEQADV 4UMM MET G 270 UNP O18473 EXPRESSION TAG SEQADV 4UMM ALA G 271 UNP O18473 EXPRESSION TAG SEQADV 4UMM SER G 272 UNP O18473 EXPRESSION TAG SEQADV 4UMM MET G 273 UNP O18473 EXPRESSION TAG SEQADV 4UMM THR G 274 UNP O18473 EXPRESSION TAG SEQADV 4UMM GLY G 275 UNP O18473 EXPRESSION TAG SEQADV 4UMM GLY G 276 UNP O18473 EXPRESSION TAG SEQADV 4UMM GLN G 277 UNP O18473 EXPRESSION TAG SEQADV 4UMM GLN G 278 UNP O18473 EXPRESSION TAG SEQADV 4UMM MET G 279 UNP O18473 EXPRESSION TAG SEQADV 4UMM GLY G 280 UNP O18473 EXPRESSION TAG SEQADV 4UMM ARG G 281 UNP O18473 EXPRESSION TAG SEQADV 4UMM ASP G 282 UNP O18473 EXPRESSION TAG SEQADV 4UMM PRO G 283 UNP O18473 EXPRESSION TAG SEQADV 4UMM THR G 322 UNP O18473 INSERTION SEQADV 4UMM TRP G 323 UNP O18473 INSERTION SEQADV 4UMM GLN G 324 UNP O18473 INSERTION SEQADV 4UMM CYS G 483 UNP O18473 GLY 501 CONFLICT SEQADV 4UMM LYS G 489 UNP O18473 GLU 507 CONFLICT SEQRES 1 A 78 LYS HIS LEU CYS SER ILE CYS GLY ASP ARG ALA SER GLY SEQRES 2 A 78 LYS HIS TYR GLY VAL TYR SER CYS GLU GLY CYS LYS GLY SEQRES 3 A 78 PHE PHE LYS ARG THR VAL ARG LYS ASP LEU THR TYR ALA SEQRES 4 A 78 CYS ARG GLU GLU ARG ASN CYS ILE ILE ASP LYS ARG GLN SEQRES 5 A 78 ARG ASN ARG CYS GLN TYR CYS ARG TYR GLN LYS CYS LEU SEQRES 6 A 78 ALA CYS GLY MET LYS ARG GLU ALA VAL GLN GLU GLU ARG SEQRES 1 C 20 DC DA DA DG DG DG DT DT DC DA DA DT DG SEQRES 2 C 20 DC DA DC DT DT DG DT SEQRES 1 D 20 DG DA DC DA DA DG DT DG DC DA DT DT DG SEQRES 2 D 20 DA DA DC DC DC DT DT SEQRES 1 E 87 ARG GLN GLN GLU GLU LEU CYS LEU VAL CYS GLY ASP ARG SEQRES 2 E 87 ALA SER GLY TYR HIS TYR ASN ALA LEU THR CYS GLU GLY SEQRES 3 E 87 CYS LYS GLY PHE PHE ARG ARG SER VAL THR LYS ASN ALA SEQRES 4 E 87 VAL TYR ILE CYS LYS PHE GLY HIS ALA CYS GLU MET ASP SEQRES 5 E 87 MET TYR MET ARG ARG LYS CYS GLN GLU CYS ARG LEU LYS SEQRES 6 E 87 LYS CYS LEU ALA VAL GLY MET ARG PRO GLU CYS VAL VAL SEQRES 7 E 87 PRO GLU ASN GLN CYS ALA MET LYS ARG SEQRES 1 F 264 ALA ALA VAL GLN GLU LEU SER ILE GLU ARG LEU LEU GLU SEQRES 2 F 264 MET GLU SER LEU VAL ALA ASP PRO SER GLU GLU PHE GLN SEQRES 3 F 264 PHE LEU ARG VAL GLY PRO ASP SER ASN VAL PRO PRO LYS SEQRES 4 F 264 PHE ARG ALA PRO VAL SER SER LEU CYS GLN ILE GLY ASN SEQRES 5 F 264 LYS GLN ILE ALA ALA LEU VAL VAL TRP ALA ARG ASP ILE SEQRES 6 F 264 PRO HIS PHE SER GLN LEU GLU MET GLU ASP GLN ILE LEU SEQRES 7 F 264 LEU ILE LYS GLY SER TRP ASN GLU LEU LEU LEU PHE ALA SEQRES 8 F 264 ILE ALA TRP ARG SER MET GLU PHE LEU THR GLU GLU ARG SEQRES 9 F 264 ASP GLY VAL ASP GLY THR GLY ASN ARG THR THR SER PRO SEQRES 10 F 264 PRO GLN LEU MET CYS LEU MET PRO GLY MET THR LEU HIS SEQRES 11 F 264 ARG ASN SER ALA LEU GLN ALA GLY VAL GLY GLN ILE PHE SEQRES 12 F 264 ASP ARG VAL LEU SER GLU LEU SER LEU LYS MET ARG THR SEQRES 13 F 264 LEU ARG VAL ASP GLN ALA GLU TYR VAL ALA LEU LYS ALA SEQRES 14 F 264 ILE ILE LEU LEU ASN PRO ASP VAL LYS GLY LEU LYS ASN SEQRES 15 F 264 ARG GLN GLU VAL GLU VAL LEU ARG GLU LYS MET PHE LEU SEQRES 16 F 264 CYS LEU ASP GLU TYR CYS ARG ARG SER ARG SER SER GLU SEQRES 17 F 264 GLU GLY ARG PHE ALA ALA LEU LEU LEU ARG LEU PRO ALA SEQRES 18 F 264 LEU ARG SER ILE SER LEU LYS SER PHE GLU HIS LEU PHE SEQRES 19 F 264 PHE PHE HIS LEU VAL ALA ASP THR SER ILE ALA GLY TYR SEQRES 20 F 264 ILE ARG ASP ALA LEU ARG ASN HIS ALA PRO PRO ILE ASP SEQRES 21 F 264 THR ASN MET MET SEQRES 1 G 266 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 G 266 GLY ARG ASP PRO LEU LYS ASN VAL PRO PRO LEU THR ALA SEQRES 3 G 266 ASN GLN LYS SER LEU ILE ALA ARG LEU VAL TRP TYR GLN SEQRES 4 G 266 GLU GLY TYR GLU GLN PRO SER GLU GLU ASP LEU LYS ARG SEQRES 5 G 266 VAL THR GLN THR TRP GLN SER ASP GLU ASP ASP GLU ASP SEQRES 6 G 266 SER ASP MET PRO PHE ARG GLN ILE THR GLU MET THR ILE SEQRES 7 G 266 LEU THR VAL GLN LEU ILE VAL GLU PHE ALA LYS GLY LEU SEQRES 8 G 266 PRO GLY PHE ALA LYS ILE SER GLN SER ASP GLN ILE THR SEQRES 9 G 266 LEU LEU LYS ALA CYS SER SER GLU VAL MET MET LEU ARG SEQRES 10 G 266 VAL ALA ARG ARG TYR ASP ALA ALA THR ASP SER VAL LEU SEQRES 11 G 266 PHE ALA ASN ASN GLN ALA TYR THR ARG ASP ASN TYR ARG SEQRES 12 G 266 LYS ALA GLY MET ALA TYR VAL ILE GLU ASP LEU LEU HIS SEQRES 13 G 266 PHE CYS ARG CYS MET TYR SER MET MET MET ASP ASN VAL SEQRES 14 G 266 HIS TYR ALA LEU LEU THR ALA ILE VAL ILE PHE SER ASP SEQRES 15 G 266 ARG PRO GLY LEU GLU GLN PRO LEU LEU VAL GLU GLU ILE SEQRES 16 G 266 GLN ARG TYR TYR LEU ASN THR LEU ARG VAL TYR ILE LEU SEQRES 17 G 266 ASN GLN ASN SER ALA SER PRO ARG CYS ALA VAL ILE PHE SEQRES 18 G 266 GLY LYS ILE LEU GLY ILE LEU THR GLU ILE ARG THR LEU SEQRES 19 G 266 GLY MET GLN ASN SER ASN MET CYS ILE SER LEU LYS LEU SEQRES 20 G 266 LYS ASN ARG LYS LEU PRO PRO PHE LEU GLU GLU ILE TRP SEQRES 21 G 266 ASP VAL ALA ASP VAL ALA HET EPH F1456 49 HET P1A G1530 33 HETNAM EPH L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL- HETNAM 2 EPH PHOSPHATIDYLETHANOLAMINE HETNAM P1A 2,3,14,20,22-PENTAHYDROXYCHOLEST-7-EN-6-ONE HETSYN P1A PONASTERONE A, 25-DEOXYECDYSTERONE, 25-DEOXY-20- HETSYN 2 P1A HYDROXYECDYSONE, FORMUL 7 EPH C39 H68 N O8 P FORMUL 8 P1A C27 H44 O6 FORMUL 9 HOH *8(H2 O) HELIX 1 1 CYS A 130 ASP A 144 1 15 HELIX 2 2 GLN A 161 ARG A 164 5 4 HELIX 3 3 CYS A 165 GLY A 177 1 13 HELIX 4 4 LYS A 179 VAL A 183 5 5 HELIX 5 5 CYS E 164 LYS E 177 1 14 HELIX 6 6 TYR E 194 CYS E 199 1 6 HELIX 7 7 CYS E 199 VAL E 210 1 12 HELIX 8 8 ARG E 213 VAL E 217 5 5 HELIX 9 9 ASN E 221 ARG E 227 1 7 HELIX 10 10 SER F 209 SER F 218 1 10 HELIX 11 11 PRO F 239 LYS F 241 5 3 HELIX 12 12 PHE F 242 ARG F 265 1 24 HELIX 13 13 HIS F 269 LEU F 273 5 5 HELIX 14 14 GLU F 274 GLY F 284 1 11 HELIX 15 15 SER F 285 MET F 299 1 15 HELIX 16 16 ARG F 333 ALA F 339 1 7 HELIX 17 17 VAL F 341 LEU F 352 1 12 HELIX 18 18 LEU F 352 ARG F 360 1 9 HELIX 19 19 ASP F 362 LEU F 375 1 14 HELIX 20 20 ASN F 384 SER F 408 1 25 HELIX 21 21 GLY F 412 LEU F 419 1 8 HELIX 22 22 LEU F 419 PHE F 438 1 20 HELIX 23 23 ALA F 442 THR F 444 5 3 HELIX 24 24 SER F 445 LEU F 454 1 10 HELIX 25 25 THR G 291 GLU G 309 1 19 HELIX 26 26 SER G 312 THR G 320 1 9 HELIX 27 27 ASP G 333 GLY G 356 1 24 HELIX 28 28 GLY G 359 ILE G 363 5 5 HELIX 29 29 SER G 364 ARG G 387 1 24 HELIX 30 30 THR G 404 ALA G 411 1 8 HELIX 31 31 MET G 413 SER G 429 1 17 HELIX 32 32 ASP G 433 PHE G 446 1 14 HELIX 33 33 GLN G 454 ASN G 477 1 24 HELIX 34 34 PRO G 481 LEU G 513 1 33 HELIX 35 35 PRO G 519 TRP G 526 1 8 SHEET 1 AA 2 LYS A 123 HIS A 124 0 SHEET 2 AA 2 VAL A 127 TYR A 128 -1 O VAL A 127 N HIS A 124 SHEET 1 EA 2 GLY E 156 HIS E 158 0 SHEET 2 EA 2 ALA E 161 THR E 163 -1 O ALA E 161 N HIS E 158 SHEET 1 FA 2 LEU F 322 CYS F 324 0 SHEET 2 FA 2 THR F 330 HIS F 332 -1 O LEU F 331 N MET F 323 SHEET 1 GA 3 TYR G 388 ASP G 389 0 SHEET 2 GA 3 SER G 394 PHE G 397 -1 O SER G 394 N ASP G 389 SHEET 3 GA 3 GLN G 401 TYR G 403 -1 O GLN G 401 N PHE G 397 CISPEP 1 PRO F 268 HIS F 269 0 23.32 SITE 1 AC1 17 GLU G 309 GLN G 310 ILE G 339 MET G 342 SITE 2 AC1 17 THR G 343 THR G 346 ARG G 383 VAL G 384 SITE 3 AC1 17 ARG G 387 LEU G 396 PHE G 397 ALA G 398 SITE 4 AC1 17 TYR G 408 MET G 413 VAL G 416 LEU G 420 SITE 5 AC1 17 ASN G 504 SITE 1 AC2 15 LEU F 230 VAL F 238 PRO F 239 PHE F 242 SITE 2 AC2 15 LEU F 249 ASN F 287 LEU F 290 MET F 323 SITE 3 AC2 15 LEU F 331 GLN F 338 ALA F 339 SER F 431 SITE 4 AC2 15 HIS F 434 PHE F 438 LEU F 440 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000