HEADER TRANSFERASE 30-MAY-14 4UNQ TITLE MTB TMK IN COMPLEX WITH COMPOUND 36 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-210; COMPND 5 SYNONYM: THYMIDINE MONOPHOSPHATE KINASE, DTMP KINASE, TMPK; COMPND 6 EC: 2.7.4.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSFER (ATP TMP PHOSPHOTRANSFERASE), KINASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.READ,S.HUSSEIN,H.GINGELL,J.TUCKER REVDAT 3 10-JAN-24 4UNQ 1 REMARK LINK REVDAT 2 04-APR-18 4UNQ 1 REMARK REVDAT 1 24-JUN-15 4UNQ 0 JRNL AUTH M.NAIK,A.RAICHURKAR,B.S.BANDODKAR,B.V.VARUN,S.BHAT, JRNL AUTH 2 R.KALKHAMBKAR,K.MURUGAN,R.MENON,J.BHAT,B.PAUL,H.IYER, JRNL AUTH 3 S.HUSSEIN,J.A.TUCKER,M.VOGTHERR,K.J.EMBREY,H.MCMIKEN, JRNL AUTH 4 S.PRASAD,A.GILL,B.G.UGARKAR,J.VENKATRAMAN,J.READ,M.PANDA JRNL TITL STRUCTURE GUIDED LEAD GENERATION FOR M. TUBERCULOSIS JRNL TITL 2 THYMIDYLATE KINASE (MTB TMK): DISCOVERY OF 3-CYANOPYRIDONE JRNL TITL 3 AND 1,6-NAPHTHYRIDIN-2-ONE AS POTENT INHIBITORS. JRNL REF J.MED.CHEM. V. 58 753 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25486447 JRNL DOI 10.1021/JM5012947 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 18996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 987 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1400 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2736 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.72000 REMARK 3 B22 (A**2) : 6.72000 REMARK 3 B33 (A**2) : -13.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.459 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2854 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1827 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3890 ; 1.347 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4410 ; 0.902 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 5.335 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;30.982 ;22.456 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 403 ;15.475 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;22.003 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3338 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 631 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1852 ; 0.712 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 778 ; 0.153 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2891 ; 1.307 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1002 ; 2.140 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 999 ; 3.478 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.846 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H-K, K, -L REMARK 3 TWIN FRACTION : 0.154 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 209 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5370 37.0049 -13.4882 REMARK 3 T TENSOR REMARK 3 T11: 0.0289 T22: 0.0414 REMARK 3 T33: 0.1361 T12: 0.0094 REMARK 3 T13: 0.0364 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.6477 L22: 2.1592 REMARK 3 L33: 2.1274 L12: -0.1748 REMARK 3 L13: 0.1344 L23: -0.8175 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: -0.0479 S13: -0.0870 REMARK 3 S21: 0.0041 S22: -0.0437 S23: -0.0252 REMARK 3 S31: -0.0272 S32: -0.0059 S33: 0.0783 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 209 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1479 13.3112 13.7866 REMARK 3 T TENSOR REMARK 3 T11: 0.0471 T22: 0.0482 REMARK 3 T33: 0.1705 T12: -0.0145 REMARK 3 T13: -0.0603 T23: 0.0566 REMARK 3 L TENSOR REMARK 3 L11: 0.9946 L22: 3.7452 REMARK 3 L33: 2.6801 L12: -0.5855 REMARK 3 L13: -0.0216 L23: -2.2225 REMARK 3 S TENSOR REMARK 3 S11: 0.1044 S12: 0.0754 S13: -0.0475 REMARK 3 S21: -0.2407 S22: 0.0703 S23: 0.1870 REMARK 3 S31: 0.2260 S32: -0.1661 S33: -0.1747 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4UNQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290060812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20011 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 65.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1G3U REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.71933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.85967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 145 REMARK 465 ALA A 146 REMARK 465 GLY A 147 REMARK 465 GLU A 148 REMARK 465 ARG A 149 REMARK 465 SER A 150 REMARK 465 ARG A 151 REMARK 465 GLY A 152 REMARK 465 ARG A 153 REMARK 465 ALA A 154 REMARK 465 GLN A 155 REMARK 465 ARG A 156 REMARK 465 ASP A 157 REMARK 465 PRO A 158 REMARK 465 GLY A 159 REMARK 465 ARG A 160 REMARK 465 ALA A 161 REMARK 465 ARG A 162 REMARK 465 ASP A 163 REMARK 465 ASN A 164 REMARK 465 TYR A 165 REMARK 465 GLU A 166 REMARK 465 ARG A 167 REMARK 465 PRO A 210 REMARK 465 GLY B 147 REMARK 465 GLU B 148 REMARK 465 ARG B 149 REMARK 465 SER B 150 REMARK 465 ARG B 151 REMARK 465 GLY B 152 REMARK 465 ARG B 153 REMARK 465 ALA B 154 REMARK 465 GLN B 155 REMARK 465 ARG B 156 REMARK 465 ASP B 157 REMARK 465 PRO B 158 REMARK 465 GLY B 159 REMARK 465 ARG B 160 REMARK 465 ALA B 161 REMARK 465 ARG B 162 REMARK 465 ASP B 163 REMARK 465 ASN B 164 REMARK 465 TYR B 165 REMARK 465 GLU B 166 REMARK 465 PRO B 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 115 CD CE NZ REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 GLN A 173 CG CD OE1 NE2 REMARK 470 ARG B 14 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 167 N CA CB CG CD NE CZ REMARK 470 ARG B 167 NH1 NH2 REMARK 470 ARG B 202 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 41 -50.41 -134.28 REMARK 500 ARG A 95 139.56 73.98 REMARK 500 TYR A 96 -153.20 -151.72 REMARK 500 ARG B 95 141.16 79.90 REMARK 500 TYR B 96 -144.32 -152.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2103 DISTANCE = 8.52 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H6D A 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H6D B 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1211 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UNN RELATED DB: PDB REMARK 900 MTB TMK IN COMPLEX WITH COMPOUND 8 REMARK 900 RELATED ID: 4UNP RELATED DB: PDB REMARK 900 MTB TMK IN COMPLEX WITH COMPOUND 34 REMARK 900 RELATED ID: 4UNR RELATED DB: PDB REMARK 900 MTB TMK IN COMPLEX WITH COMPOUND 23 REMARK 900 RELATED ID: 4UNS RELATED DB: PDB REMARK 900 MTB TMK IN COMPLEX WITH COMPOUND 40 DBREF 4UNQ A 1 210 UNP F2GKC3 F2GKC3_MYCTX 1 210 DBREF 4UNQ B 1 210 UNP F2GKC3 F2GKC3_MYCTX 1 210 SEQRES 1 A 210 MET LEU ILE ALA ILE GLU GLY VAL ASP GLY ALA GLY LYS SEQRES 2 A 210 ARG THR LEU VAL GLU LYS LEU SER GLY ALA PHE ARG ALA SEQRES 3 A 210 ALA GLY ARG SER VAL ALA THR LEU ALA PHE PRO ARG TYR SEQRES 4 A 210 GLY GLN SER VAL ALA ALA ASP ILE ALA ALA GLU ALA LEU SEQRES 5 A 210 HIS GLY GLU HIS GLY ASP LEU ALA SER SER VAL TYR ALA SEQRES 6 A 210 MET ALA THR LEU PHE ALA LEU ASP ARG ALA GLY ALA VAL SEQRES 7 A 210 HIS THR ILE GLN GLY LEU CYS ARG GLY TYR ASP VAL VAL SEQRES 8 A 210 ILE LEU ASP ARG TYR VAL ALA SER ASN ALA ALA TYR SER SEQRES 9 A 210 ALA ALA ARG LEU HIS GLU ASN ALA ALA GLY LYS ALA ALA SEQRES 10 A 210 ALA TRP VAL GLN ARG ILE GLU PHE ALA ARG LEU GLY LEU SEQRES 11 A 210 PRO LYS PRO ASP TRP GLN VAL LEU LEU ALA VAL SER ALA SEQRES 12 A 210 GLU LEU ALA GLY GLU ARG SER ARG GLY ARG ALA GLN ARG SEQRES 13 A 210 ASP PRO GLY ARG ALA ARG ASP ASN TYR GLU ARG ASP ALA SEQRES 14 A 210 GLU LEU GLN GLN ARG THR GLY ALA VAL TYR ALA GLU LEU SEQRES 15 A 210 ALA ALA GLN GLY TRP GLY GLY ARG TRP LEU VAL VAL GLY SEQRES 16 A 210 ALA ASP VAL ASP PRO GLY ARG LEU ALA ALA THR LEU ALA SEQRES 17 A 210 PRO PRO SEQRES 1 B 210 MET LEU ILE ALA ILE GLU GLY VAL ASP GLY ALA GLY LYS SEQRES 2 B 210 ARG THR LEU VAL GLU LYS LEU SER GLY ALA PHE ARG ALA SEQRES 3 B 210 ALA GLY ARG SER VAL ALA THR LEU ALA PHE PRO ARG TYR SEQRES 4 B 210 GLY GLN SER VAL ALA ALA ASP ILE ALA ALA GLU ALA LEU SEQRES 5 B 210 HIS GLY GLU HIS GLY ASP LEU ALA SER SER VAL TYR ALA SEQRES 6 B 210 MET ALA THR LEU PHE ALA LEU ASP ARG ALA GLY ALA VAL SEQRES 7 B 210 HIS THR ILE GLN GLY LEU CYS ARG GLY TYR ASP VAL VAL SEQRES 8 B 210 ILE LEU ASP ARG TYR VAL ALA SER ASN ALA ALA TYR SER SEQRES 9 B 210 ALA ALA ARG LEU HIS GLU ASN ALA ALA GLY LYS ALA ALA SEQRES 10 B 210 ALA TRP VAL GLN ARG ILE GLU PHE ALA ARG LEU GLY LEU SEQRES 11 B 210 PRO LYS PRO ASP TRP GLN VAL LEU LEU ALA VAL SER ALA SEQRES 12 B 210 GLU LEU ALA GLY GLU ARG SER ARG GLY ARG ALA GLN ARG SEQRES 13 B 210 ASP PRO GLY ARG ALA ARG ASP ASN TYR GLU ARG ASP ALA SEQRES 14 B 210 GLU LEU GLN GLN ARG THR GLY ALA VAL TYR ALA GLU LEU SEQRES 15 B 210 ALA ALA GLN GLY TRP GLY GLY ARG TRP LEU VAL VAL GLY SEQRES 16 B 210 ALA ASP VAL ASP PRO GLY ARG LEU ALA ALA THR LEU ALA SEQRES 17 B 210 PRO PRO HET H6D A1210 23 HET H6D B1210 23 HET NA B1211 1 HETNAM H6D 4-[(R)-METHYLSULFINYL]-2-OXO-6-[3-(TRIFLUOROMETHOXY) HETNAM 2 H6D PHENYL]-1,2-DIHYDROPYRIDINE-3-CARBONITRILE HETNAM NA SODIUM ION FORMUL 3 H6D 2(C14 H9 F3 N2 O3 S) FORMUL 5 NA NA 1+ FORMUL 6 HOH *173(H2 O) HELIX 1 1 GLY A 12 ALA A 27 1 16 HELIX 2 2 SER A 42 HIS A 53 1 12 HELIX 3 3 ASP A 58 SER A 61 5 4 HELIX 4 4 SER A 62 ALA A 77 1 16 HELIX 5 5 ALA A 77 TYR A 88 1 12 HELIX 6 6 TYR A 96 LEU A 108 1 13 HELIX 7 7 GLY A 114 PHE A 125 1 12 HELIX 8 8 ASP A 168 GLY A 186 1 19 HELIX 9 9 ASP A 199 ALA A 208 1 10 HELIX 10 10 GLY B 12 ALA B 27 1 16 HELIX 11 11 SER B 42 HIS B 53 1 12 HELIX 12 12 HIS B 56 SER B 61 5 6 HELIX 13 13 SER B 62 GLY B 76 1 15 HELIX 14 14 ALA B 77 TYR B 88 1 12 HELIX 15 15 TYR B 96 LEU B 108 1 13 HELIX 16 16 GLY B 114 PHE B 125 1 12 HELIX 17 17 ASP B 168 GLY B 186 1 19 HELIX 18 18 ASP B 199 ALA B 208 1 10 SHEET 1 AA 5 VAL A 31 ALA A 35 0 SHEET 2 AA 5 VAL A 90 ASP A 94 1 O VAL A 90 N ALA A 32 SHEET 3 AA 5 LEU A 2 GLU A 6 1 O ILE A 3 N LEU A 93 SHEET 4 AA 5 TRP A 135 LEU A 139 1 O TRP A 135 N ALA A 4 SHEET 5 AA 5 ARG A 190 VAL A 194 1 O ARG A 190 N GLN A 136 SHEET 1 BA 5 VAL B 31 ALA B 35 0 SHEET 2 BA 5 VAL B 90 ASP B 94 1 O VAL B 90 N ALA B 32 SHEET 3 BA 5 LEU B 2 GLU B 6 1 O ILE B 3 N LEU B 93 SHEET 4 BA 5 TRP B 135 LEU B 139 1 O TRP B 135 N ALA B 4 SHEET 5 BA 5 TRP B 191 VAL B 194 1 O LEU B 192 N LEU B 138 LINK NZ LYS B 13 NA NA B1211 1555 1555 3.10 CISPEP 1 PHE A 36 PRO A 37 0 -10.05 CISPEP 2 PHE B 36 PRO B 37 0 -5.05 SITE 1 AC1 11 PRO A 37 TYR A 39 LEU A 52 PHE A 70 SITE 2 AC1 11 ARG A 74 ARG A 95 SER A 99 ASN A 100 SITE 3 AC1 11 TYR A 103 SER A 104 ARG A 107 SITE 1 AC2 12 PRO B 37 TYR B 39 LEU B 52 PHE B 70 SITE 2 AC2 12 ARG B 74 ARG B 95 SER B 99 ASN B 100 SITE 3 AC2 12 TYR B 103 SER B 104 ARG B 107 LEU B 171 SITE 1 AC3 3 GLY B 10 GLY B 12 LYS B 13 CRYST1 75.459 75.459 71.579 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013252 0.007651 0.000000 0.00000 SCALE2 0.000000 0.015302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013971 0.00000