HEADER IMMUNE SYSTEM 30-MAY-14 4UNU TITLE MCG - A DIMER OF LAMBDA VARIABLE DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG LAMBDA CHAIN V-II REGION MGC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGHT-CHAIN VARIABLE DOMAIN, RESIDUES 1-110; COMPND 5 SYNONYM: MCG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BLOOD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET26B KEYWDS IMMUNE SYSTEM, BENCE-JONES, LIGHT CHAINS, IMMUNOGLOBULIN, AMYLOID EXPDTA X-RAY DIFFRACTION AUTHOR B.BRUMSHTEIN,S.R.ESSWEIN,M.LANDAU,C.RYAN,J.WHITELEGGE,D.CASIO, AUTHOR 2 M.R.SAWAYA,D.S.EISENBERG REVDAT 6 13-NOV-24 4UNU 1 REMARK REVDAT 5 10-JAN-24 4UNU 1 REMARK REVDAT 4 13-SEP-17 4UNU 1 REMARK REVDAT 3 15-OCT-14 4UNU 1 JRNL REVDAT 2 03-SEP-14 4UNU 1 JRNL REVDAT 1 27-AUG-14 4UNU 0 JRNL AUTH B.BRUMSHTEIN,S.R.ESSWEIN,M.LANDAU,C.M.RYAN,J.P.WHITELEGGE, JRNL AUTH 2 M.L.PHILLIPS,D.CASCIO,M.R.SAWAYA,D.S.EISENBERG JRNL TITL FORMATION OF AMYLOID FIBERS BY MONOMERIC LIGHT-CHAIN JRNL TITL 2 VARIABLE DOMAINS. JRNL REF J.BIOL.CHEM. V. 289 27513 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25138218 JRNL DOI 10.1074/JBC.M114.585638 REMARK 2 REMARK 2 RESOLUTION. 0.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 89567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.108 REMARK 3 R VALUE (WORKING SET) : 0.107 REMARK 3 FREE R VALUE : 0.130 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4714 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2576 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 34.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1584 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.019 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.020 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.012 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.454 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.977 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1781 ; 0.026 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1574 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2456 ; 2.291 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3677 ; 1.146 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 7.209 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;35.792 ;24.925 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 255 ;11.049 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;10.170 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 273 ; 0.166 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2099 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 397 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 917 ; 1.173 ; 0.664 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 916 ; 1.173 ; 0.664 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1154 ; 1.441 ; 1.008 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 864 ; 2.673 ; 0.892 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3353 ; 7.393 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 48 ;69.667 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3620 ;16.854 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4UNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290058159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89567 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 34.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3MCG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M NACL, 2M (NH4)2SO4, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.06000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLN A 1 REMARK 465 GLY B 0 REMARK 465 GLN B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 44 CD CE NZ REMARK 470 LYS A 47 CE NZ REMARK 470 GLU A 83 CD OE1 OE2 REMARK 470 LYS B 44 CE NZ REMARK 470 LYS B 47 NZ REMARK 470 GLU B 83 CD OE1 OE2 REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2097 O HOH A 2104 1.45 REMARK 500 O2 SO4 B 1113 O HOH B 2100 1.51 REMARK 500 O HOH A 2081 O HOH A 2177 1.57 REMARK 500 O3 15P A 1111 O HOH A 2223 1.58 REMARK 500 O HOH B 2029 O HOH B 2063 1.72 REMARK 500 NE2 GLN B 16 O HOH B 2031 1.73 REMARK 500 O HOH B 2027 O HOH B 2039 1.78 REMARK 500 O HOH A 2048 O HOH A 2049 1.80 REMARK 500 O HOH A 2132 O HOH A 2133 1.92 REMARK 500 O HOH A 2055 O HOH A 2056 1.97 REMARK 500 O HOH A 2117 O HOH A 2118 1.99 REMARK 500 O HOH A 2061 O HOH A 2062 2.02 REMARK 500 O HOH A 2054 O HOH A 2057 2.02 REMARK 500 O HOH B 2102 O HOH B 2103 2.03 REMARK 500 O HOH A 2055 O HOH A 2061 2.04 REMARK 500 O HOH A 2057 O HOH A 2062 2.05 REMARK 500 O HOH A 2140 O HOH A 2141 2.05 REMARK 500 NE2 HIS B 41 O HOH B 2072 2.08 REMARK 500 O HOH A 2184 O HOH B 2108 2.09 REMARK 500 O HOH A 2074 O HOH A 2184 2.13 REMARK 500 OG SER B 78 O HOH A 2074 2.15 REMARK 500 O HOH A 2054 O HOH A 2118 2.18 REMARK 500 NE2 GLN A 16 O HOH A 2046 2.19 REMARK 500 O HOH B 2001 O HOH B 2132 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2047 O HOH B 2110 1565 0.42 REMARK 500 O HOH A 2130 O HOH B 2002 1455 0.99 REMARK 500 O HOH A 2097 O HOH B 2057 2645 1.64 REMARK 500 O HOH A 2209 O HOH B 2099 1455 1.70 REMARK 500 OE2 GLU A 85 OG SER B 13 2656 1.78 REMARK 500 O HOH A 2108 O HOH B 2105 2655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 11 CB SER A 11 OG -0.109 REMARK 500 ILE A 49 CA ILE A 49 CB 0.154 REMARK 500 SER A 67 CA SER A 67 CB 0.147 REMARK 500 SER A 78 CB SER A 78 OG -0.091 REMARK 500 GLU A 85 CD GLU A 85 OE1 -0.103 REMARK 500 SER B 2 C SER B 2 O 0.118 REMARK 500 TYR B 38 CE2 TYR B 38 CD2 0.093 REMARK 500 SER B 65 CB SER B 65 OG -0.101 REMARK 500 SER B 67 CB SER B 67 OG -0.350 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR B 38 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 GLU B 52 OE1 - CD - OE2 ANGL. DEV. = -8.7 DEGREES REMARK 500 SER B 67 N - CA - CB ANGL. DEV. = -9.1 DEGREES REMARK 500 SER B 67 CA - CB - OG ANGL. DEV. = 25.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 16 -154.86 -114.83 REMARK 500 GLN A 16 -160.23 -109.14 REMARK 500 ASP A 28 -101.07 -145.59 REMARK 500 ASN A 33 48.13 -103.00 REMARK 500 VAL A 53 -48.20 72.62 REMARK 500 ASN A 54 13.97 -142.50 REMARK 500 GLU A 94 30.67 -143.58 REMARK 500 SER A 96 -131.14 52.86 REMARK 500 GLN B 16 -147.69 -102.01 REMARK 500 GLN B 16 -143.68 -105.45 REMARK 500 ASP B 28 -99.78 -141.74 REMARK 500 ASN B 33 50.81 -107.51 REMARK 500 VAL B 53 -50.46 76.45 REMARK 500 GLU B 94 28.84 -142.24 REMARK 500 SER B 96 -131.02 53.12 REMARK 500 SER B 96 -130.98 52.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2057 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A2062 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A2091 DISTANCE = 6.04 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 15P A 1111 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15P A 1111 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UNT RELATED DB: PDB REMARK 900 INDUCED MONOMER OF THE MCG VARIABLE DOMAIN REMARK 900 RELATED ID: 4UNV RELATED DB: PDB REMARK 900 COVALENT DIMER OF LAMBDA VARIABLE DOMAINS DBREF 4UNU A 1 110 UNP P01709 LV206_HUMAN 1 110 DBREF 4UNU B 1 110 UNP P01709 LV206_HUMAN 1 110 SEQADV 4UNU GLY A 0 UNP P01709 EXPRESSION TAG SEQADV 4UNU GLY B 0 UNP P01709 EXPRESSION TAG SEQRES 1 A 111 GLY GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SEQRES 2 A 111 SER LEU GLY GLN SER VAL THR ILE SER CYS THR GLY THR SEQRES 3 A 111 SER SER ASP VAL GLY GLY TYR ASN TYR VAL SER TRP TYR SEQRES 4 A 111 GLN GLN HIS ALA GLY LYS ALA PRO LYS VAL ILE ILE TYR SEQRES 5 A 111 GLU VAL ASN LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SEQRES 6 A 111 SER GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SEQRES 7 A 111 SER GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 A 111 SER SER TYR GLU GLY SER ASP ASN PHE VAL PHE GLY THR SEQRES 9 A 111 GLY THR LYS VAL THR VAL LEU SEQRES 1 B 111 GLY GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SEQRES 2 B 111 SER LEU GLY GLN SER VAL THR ILE SER CYS THR GLY THR SEQRES 3 B 111 SER SER ASP VAL GLY GLY TYR ASN TYR VAL SER TRP TYR SEQRES 4 B 111 GLN GLN HIS ALA GLY LYS ALA PRO LYS VAL ILE ILE TYR SEQRES 5 B 111 GLU VAL ASN LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SEQRES 6 B 111 SER GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SEQRES 7 B 111 SER GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 B 111 SER SER TYR GLU GLY SER ASP ASN PHE VAL PHE GLY THR SEQRES 9 B 111 GLY THR LYS VAL THR VAL LEU HET 15P A1111 26 HET SO4 B1111 5 HET SO4 B1112 5 HET SO4 B1113 5 HETNAM 15P POLYETHYLENE GLYCOL (N=34) HETNAM SO4 SULFATE ION HETSYN 15P PEG 1500 FORMUL 3 15P C69 H140 O35 FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *373(H2 O) HELIX 1 1 GLN A 81 GLU A 85 5 5 HELIX 2 2 GLN B 81 GLU B 85 5 5 SHEET 1 AA 4 SER A 9 SER A 13 0 SHEET 2 AA 4 THR A 105 LEU A 110 1 O LYS A 106 N ALA A 10 SHEET 3 AA 4 ALA A 86 TYR A 93 -1 O ALA A 86 N VAL A 107 SHEET 4 AA 4 PHE A 99 PHE A 101 1 O VAL A 100 N SER A 92 SHEET 1 AB 5 SER A 9 SER A 13 0 SHEET 2 AB 5 THR A 105 LEU A 110 1 O LYS A 106 N ALA A 10 SHEET 3 AB 5 ALA A 86 TYR A 93 -1 O ALA A 86 N VAL A 107 SHEET 4 AB 5 VAL A 35 GLN A 40 -1 O SER A 36 N SER A 91 SHEET 5 AB 5 LYS A 47 ILE A 50 -1 O LYS A 47 N GLN A 39 SHEET 1 AC 2 PHE A 99 PHE A 101 0 SHEET 2 AC 2 ALA A 86 TYR A 93 1 O SER A 92 N VAL A 100 SHEET 1 AD 3 VAL A 18 THR A 23 0 SHEET 2 AD 3 THR A 72 VAL A 77 -1 O ALA A 73 N CYS A 22 SHEET 3 AD 3 PHE A 64 SER A 69 -1 O SER A 65 N THR A 76 SHEET 1 BA 4 SER B 9 SER B 13 0 SHEET 2 BA 4 THR B 105 LEU B 110 1 O LYS B 106 N ALA B 10 SHEET 3 BA 4 ALA B 86 TYR B 93 -1 O ALA B 86 N VAL B 107 SHEET 4 BA 4 PHE B 99 PHE B 101 1 O VAL B 100 N SER B 92 SHEET 1 BB 5 SER B 9 SER B 13 0 SHEET 2 BB 5 THR B 105 LEU B 110 1 O LYS B 106 N ALA B 10 SHEET 3 BB 5 ALA B 86 TYR B 93 -1 O ALA B 86 N VAL B 107 SHEET 4 BB 5 VAL B 35 GLN B 40 -1 O SER B 36 N SER B 91 SHEET 5 BB 5 LYS B 47 ILE B 50 -1 O LYS B 47 N GLN B 39 SHEET 1 BC 2 PHE B 99 PHE B 101 0 SHEET 2 BC 2 ALA B 86 TYR B 93 1 O SER B 92 N VAL B 100 SHEET 1 BD 3 VAL B 18 THR B 23 0 SHEET 2 BD 3 THR B 72 VAL B 77 -1 O ALA B 73 N CYS B 22 SHEET 3 BD 3 PHE B 64 SER B 69 -1 O SER B 65 N THR B 76 SSBOND 1 CYS A 22 CYS A 90 1555 1555 2.05 SSBOND 2 CYS B 22 CYS B 90 1555 1555 2.05 SITE 1 AC1 9 SER B 27 SER B 58 GLY B 59 VAL B 60 SITE 2 AC1 9 HOH B2049 HOH B2050 HOH B2051 HOH B2098 SITE 3 AC1 9 HOH B2144 SITE 1 AC2 9 ARG A 56 SER A 65 HOH A2137 HOH A2138 SITE 2 AC2 9 HOH A2142 HOH A2150 SER B 69 GLY B 70 SITE 3 AC2 9 HOH B2146 SITE 1 AC3 6 ARG B 56 HOH B2050 HOH B2097 HOH B2098 SITE 2 AC3 6 HOH B2100 HOH B2148 SITE 1 AC4 12 TYR A 34 TYR A 51 TYR A 93 ASP A 97 SITE 2 AC4 12 HOH A2222 HOH A2223 HOH A2224 HOH A2225 SITE 3 AC4 12 TYR B 51 ASP B 97 PHE B 99 HOH B2135 CRYST1 41.340 34.120 63.180 90.00 104.94 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024190 0.000000 0.006454 0.00000 SCALE2 0.000000 0.029308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016382 0.00000