HEADER TRANSFERASE 03-JUN-14 4UOE TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM SPERMIDINE SYNTHASE IN TITLE 2 COMPLEX WITH 5'-DEOXY-5'-METHYLIOADENOSINE AND 4-AMINOMETHYLANILINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERMIDINE SYNTHASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 41-321; COMPND 5 EC: 2.5.1.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15-TEV-LIC KEYWDS TRANSFERASE, AMINOPROPYL TRANSFERASE, POLYAMINE PATHWAY, ROSSMANN- KEYWDS 2 LIKE FOLD EXPDTA X-RAY DIFFRACTION AUTHOR J.SPRENGER,J.C.HALANDER,B.SVENSSON,S.AL-KARADAGHI,L.PERSON REVDAT 6 10-JAN-24 4UOE 1 REMARK REVDAT 5 17-JAN-18 4UOE 1 REMARK REVDAT 4 25-MAR-15 4UOE 1 JRNL REVDAT 3 11-MAR-15 4UOE 1 JRNL REVDAT 2 14-JAN-15 4UOE 1 JRNL REVDAT 1 08-OCT-14 4UOE 0 SPRSDE 08-OCT-14 4UOE 4BNO JRNL AUTH J.SPRENGER,B.SVENSSON,J.HALANDER,J.CAREY,L.PERSSON, JRNL AUTH 2 S.AL-KARADAGHI JRNL TITL THREE-DIMENSIONAL STRUCTURES OF PLASMODIUM FALCIPARUM JRNL TITL 2 SPERMIDINE SYNTHASE WITH BOUND INHIBITORS SUGGEST NEW JRNL TITL 3 STRATEGIES FOR DRUG DESIGN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 484 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 25760598 JRNL DOI 10.1107/S1399004714027011 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 72309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3822 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5214 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 267 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6745 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 426 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.461 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7023 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6744 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9483 ; 1.917 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15631 ; 0.870 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 840 ; 6.870 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 293 ;39.645 ;25.700 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1283 ;15.237 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1054 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7709 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1528 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4UOE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1290060864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04122 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MULTILAYER MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76132 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 29.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.250 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.17 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2I7C REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27.5 % PEG 3350, 0.1 M MES PH 5.6, REMARK 280 0.1M AMMONIUM SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 99.02500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.30800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 99.02500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 67.30800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -198.05000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 320 REMARK 465 ILE B 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 295 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG C 171 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 231 -164.55 75.85 REMARK 500 ILE A 235 -3.24 -146.74 REMARK 500 LEU A 250 -42.18 -130.32 REMARK 500 ASN A 320 -10.95 85.12 REMARK 500 ASP B 196 76.82 -105.43 REMARK 500 CYS B 230 46.26 -141.24 REMARK 500 GLU B 231 -172.61 61.89 REMARK 500 ILE B 235 -6.76 -142.23 REMARK 500 CYS B 266 -0.54 77.81 REMARK 500 TYR B 298 -66.99 -139.97 REMARK 500 TYR C 65 147.28 -170.59 REMARK 500 PHE C 160 54.46 -140.54 REMARK 500 PHE C 208 56.77 -110.06 REMARK 500 CYS C 230 40.59 -152.67 REMARK 500 GLU C 231 -174.44 71.54 REMARK 500 ILE C 235 -7.53 -141.10 REMARK 500 CYS C 266 -1.80 76.65 REMARK 500 TYR C 298 -62.30 -133.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4ZY A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4ZY B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PG B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTA C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4ZY C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 502 DBREF 4UOE A 41 321 UNP Q8II73 Q8II73_PLAF7 41 321 DBREF 4UOE B 41 321 UNP Q8II73 Q8II73_PLAF7 41 321 DBREF 4UOE C 41 321 UNP Q8II73 Q8II73_PLAF7 41 321 SEQRES 1 A 281 LYS LYS TRP PHE SER GLU PHE SER ILE MET TRP PRO GLY SEQRES 2 A 281 GLN ALA PHE SER LEU LYS ILE LYS LYS ILE LEU TYR GLU SEQRES 3 A 281 THR LYS SER LYS TYR GLN ASN VAL LEU VAL PHE GLU SER SEQRES 4 A 281 THR THR TYR GLY LYS VAL LEU VAL LEU ASP GLY VAL ILE SEQRES 5 A 281 GLN LEU THR GLU LYS ASP GLU PHE ALA TYR HIS GLU MET SEQRES 6 A 281 MET THR HIS VAL PRO MET THR VAL SER LYS GLU PRO LYS SEQRES 7 A 281 ASN VAL LEU VAL VAL GLY GLY GLY ASP GLY GLY ILE ILE SEQRES 8 A 281 ARG GLU LEU CYS LYS TYR LYS SER VAL GLU ASN ILE ASP SEQRES 9 A 281 ILE CYS GLU ILE ASP GLU THR VAL ILE GLU VAL SER LYS SEQRES 10 A 281 ILE TYR PHE LYS ASN ILE SER CYS GLY TYR GLU ASP LYS SEQRES 11 A 281 ARG VAL ASN VAL PHE ILE GLU ASP ALA SER LYS PHE LEU SEQRES 12 A 281 GLU ASN VAL THR ASN THR TYR ASP VAL ILE ILE VAL ASP SEQRES 13 A 281 SER SER ASP PRO ILE GLY PRO ALA GLU THR LEU PHE ASN SEQRES 14 A 281 GLN ASN PHE TYR GLU LYS ILE TYR ASN ALA LEU LYS PRO SEQRES 15 A 281 ASN GLY TYR CYS VAL ALA GLN CYS GLU SER LEU TRP ILE SEQRES 16 A 281 HIS VAL GLY THR ILE LYS ASN MET ILE GLY TYR ALA LYS SEQRES 17 A 281 LYS LEU PHE LYS LYS VAL GLU TYR ALA ASN ILE SER ILE SEQRES 18 A 281 PRO THR TYR PRO CYS GLY CYS ILE GLY ILE LEU CYS CYS SEQRES 19 A 281 SER LYS THR ASP THR GLY LEU THR LYS PRO ASN LYS LYS SEQRES 20 A 281 LEU GLU SER LYS GLU PHE ALA ASP LEU LYS TYR TYR ASN SEQRES 21 A 281 TYR GLU ASN HIS SER ALA ALA PHE LYS LEU PRO ALA PHE SEQRES 22 A 281 LEU LEU LYS GLU ILE GLU ASN ILE SEQRES 1 B 281 LYS LYS TRP PHE SER GLU PHE SER ILE MET TRP PRO GLY SEQRES 2 B 281 GLN ALA PHE SER LEU LYS ILE LYS LYS ILE LEU TYR GLU SEQRES 3 B 281 THR LYS SER LYS TYR GLN ASN VAL LEU VAL PHE GLU SER SEQRES 4 B 281 THR THR TYR GLY LYS VAL LEU VAL LEU ASP GLY VAL ILE SEQRES 5 B 281 GLN LEU THR GLU LYS ASP GLU PHE ALA TYR HIS GLU MET SEQRES 6 B 281 MET THR HIS VAL PRO MET THR VAL SER LYS GLU PRO LYS SEQRES 7 B 281 ASN VAL LEU VAL VAL GLY GLY GLY ASP GLY GLY ILE ILE SEQRES 8 B 281 ARG GLU LEU CYS LYS TYR LYS SER VAL GLU ASN ILE ASP SEQRES 9 B 281 ILE CYS GLU ILE ASP GLU THR VAL ILE GLU VAL SER LYS SEQRES 10 B 281 ILE TYR PHE LYS ASN ILE SER CYS GLY TYR GLU ASP LYS SEQRES 11 B 281 ARG VAL ASN VAL PHE ILE GLU ASP ALA SER LYS PHE LEU SEQRES 12 B 281 GLU ASN VAL THR ASN THR TYR ASP VAL ILE ILE VAL ASP SEQRES 13 B 281 SER SER ASP PRO ILE GLY PRO ALA GLU THR LEU PHE ASN SEQRES 14 B 281 GLN ASN PHE TYR GLU LYS ILE TYR ASN ALA LEU LYS PRO SEQRES 15 B 281 ASN GLY TYR CYS VAL ALA GLN CYS GLU SER LEU TRP ILE SEQRES 16 B 281 HIS VAL GLY THR ILE LYS ASN MET ILE GLY TYR ALA LYS SEQRES 17 B 281 LYS LEU PHE LYS LYS VAL GLU TYR ALA ASN ILE SER ILE SEQRES 18 B 281 PRO THR TYR PRO CYS GLY CYS ILE GLY ILE LEU CYS CYS SEQRES 19 B 281 SER LYS THR ASP THR GLY LEU THR LYS PRO ASN LYS LYS SEQRES 20 B 281 LEU GLU SER LYS GLU PHE ALA ASP LEU LYS TYR TYR ASN SEQRES 21 B 281 TYR GLU ASN HIS SER ALA ALA PHE LYS LEU PRO ALA PHE SEQRES 22 B 281 LEU LEU LYS GLU ILE GLU ASN ILE SEQRES 1 C 281 LYS LYS TRP PHE SER GLU PHE SER ILE MET TRP PRO GLY SEQRES 2 C 281 GLN ALA PHE SER LEU LYS ILE LYS LYS ILE LEU TYR GLU SEQRES 3 C 281 THR LYS SER LYS TYR GLN ASN VAL LEU VAL PHE GLU SER SEQRES 4 C 281 THR THR TYR GLY LYS VAL LEU VAL LEU ASP GLY VAL ILE SEQRES 5 C 281 GLN LEU THR GLU LYS ASP GLU PHE ALA TYR HIS GLU MET SEQRES 6 C 281 MET THR HIS VAL PRO MET THR VAL SER LYS GLU PRO LYS SEQRES 7 C 281 ASN VAL LEU VAL VAL GLY GLY GLY ASP GLY GLY ILE ILE SEQRES 8 C 281 ARG GLU LEU CYS LYS TYR LYS SER VAL GLU ASN ILE ASP SEQRES 9 C 281 ILE CYS GLU ILE ASP GLU THR VAL ILE GLU VAL SER LYS SEQRES 10 C 281 ILE TYR PHE LYS ASN ILE SER CYS GLY TYR GLU ASP LYS SEQRES 11 C 281 ARG VAL ASN VAL PHE ILE GLU ASP ALA SER LYS PHE LEU SEQRES 12 C 281 GLU ASN VAL THR ASN THR TYR ASP VAL ILE ILE VAL ASP SEQRES 13 C 281 SER SER ASP PRO ILE GLY PRO ALA GLU THR LEU PHE ASN SEQRES 14 C 281 GLN ASN PHE TYR GLU LYS ILE TYR ASN ALA LEU LYS PRO SEQRES 15 C 281 ASN GLY TYR CYS VAL ALA GLN CYS GLU SER LEU TRP ILE SEQRES 16 C 281 HIS VAL GLY THR ILE LYS ASN MET ILE GLY TYR ALA LYS SEQRES 17 C 281 LYS LEU PHE LYS LYS VAL GLU TYR ALA ASN ILE SER ILE SEQRES 18 C 281 PRO THR TYR PRO CYS GLY CYS ILE GLY ILE LEU CYS CYS SEQRES 19 C 281 SER LYS THR ASP THR GLY LEU THR LYS PRO ASN LYS LYS SEQRES 20 C 281 LEU GLU SER LYS GLU PHE ALA ASP LEU LYS TYR TYR ASN SEQRES 21 C 281 TYR GLU ASN HIS SER ALA ALA PHE LYS LEU PRO ALA PHE SEQRES 22 C 281 LEU LEU LYS GLU ILE GLU ASN ILE HET MTA A 401 20 HET 4ZY A 501 9 HET MTA B 401 20 HET 4ZY B 501 9 HET GOL B 503 6 HET 1PG B 702 17 HET MTA C 401 20 HET 4ZY C 501 9 HET GOL C 502 6 HETNAM MTA 5'-DEOXY-5'-METHYLTHIOADENOSINE HETNAM 4ZY 4-(AMINOMETHYL)ANILINE HETNAM GOL GLYCEROL HETNAM 1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)- HETNAM 2 1PG ETHANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 MTA 3(C11 H15 N5 O3 S) FORMUL 5 4ZY 3(C7 H10 N2) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 9 1PG C11 H24 O6 FORMUL 13 HOH *426(H2 O) HELIX 1 1 ASP A 98 SER A 114 1 17 HELIX 2 2 GLY A 128 CYS A 135 1 8 HELIX 3 3 ASP A 149 PHE A 160 1 12 HELIX 4 4 PHE A 160 CYS A 165 1 6 HELIX 5 5 GLY A 166 ASP A 169 5 4 HELIX 6 6 ASP A 178 VAL A 186 1 9 HELIX 7 7 GLY A 202 PHE A 208 5 7 HELIX 8 8 ASN A 209 ALA A 219 1 11 HELIX 9 9 HIS A 236 LYS A 249 1 14 HELIX 10 10 TYR A 264 CYS A 266 5 3 HELIX 11 11 SER A 290 ALA A 294 5 5 HELIX 12 12 ASN A 300 ALA A 307 1 8 HELIX 13 13 PRO A 311 GLU A 319 1 9 HELIX 14 14 ASP B 98 THR B 112 1 15 HELIX 15 15 GLY B 128 CYS B 135 1 8 HELIX 16 16 ASP B 149 PHE B 160 1 12 HELIX 17 17 PHE B 160 CYS B 165 1 6 HELIX 18 18 GLY B 166 ASP B 169 5 4 HELIX 19 19 ASP B 178 LEU B 183 1 6 HELIX 20 20 GLY B 202 PHE B 208 5 7 HELIX 21 21 ASN B 209 ALA B 219 1 11 HELIX 22 22 HIS B 236 LYS B 249 1 14 HELIX 23 23 TYR B 264 CYS B 266 5 3 HELIX 24 24 SER B 290 ALA B 294 5 5 HELIX 25 25 ASN B 300 ALA B 307 1 8 HELIX 26 26 PRO B 311 GLU B 319 1 9 HELIX 27 27 ASP C 98 SER C 114 1 17 HELIX 28 28 GLY C 128 LYS C 136 1 9 HELIX 29 29 ASP C 149 PHE C 160 1 12 HELIX 30 30 PHE C 160 CYS C 165 1 6 HELIX 31 31 GLY C 166 ASP C 169 5 4 HELIX 32 32 ASP C 178 LEU C 183 1 6 HELIX 33 33 GLY C 202 PHE C 208 5 7 HELIX 34 34 ASN C 209 ALA C 219 1 11 HELIX 35 35 HIS C 236 LYS C 249 1 14 HELIX 36 36 TYR C 264 CYS C 266 5 3 HELIX 37 37 SER C 290 ALA C 294 5 5 HELIX 38 38 ASN C 300 ALA C 307 1 8 HELIX 39 39 PRO C 311 GLU C 319 1 9 SHEET 1 AA 5 TRP A 43 GLU A 46 0 SHEET 2 AA 5 PHE A 56 LYS A 68 -1 O PHE A 56 N GLU A 46 SHEET 3 AA 5 ASN A 73 SER A 79 -1 O VAL A 74 N THR A 67 SHEET 4 AA 5 LYS A 84 LEU A 88 -1 O VAL A 85 N PHE A 77 SHEET 5 AA 5 VAL A 91 THR A 95 -1 O VAL A 91 N LEU A 88 SHEET 1 AB 7 VAL A 172 ILE A 176 0 SHEET 2 AB 7 ASN A 142 GLU A 147 1 O ILE A 143 N ASN A 173 SHEET 3 AB 7 ASN A 119 GLY A 124 1 O VAL A 120 N ASP A 144 SHEET 4 AB 7 TYR A 190 ASP A 196 1 N ASP A 191 O ASN A 119 SHEET 5 AB 7 LEU A 220 GLN A 229 1 N LYS A 221 O TYR A 190 SHEET 6 AB 7 CYS A 268 SER A 275 -1 O LEU A 272 N ALA A 228 SHEET 7 AB 7 LYS A 253 SER A 260 -1 O LYS A 253 N SER A 275 SHEET 1 BA 2 TRP B 43 GLU B 46 0 SHEET 2 BA 2 GLN B 54 LYS B 68 -1 O PHE B 56 N GLU B 46 SHEET 1 BB 8 VAL B 91 THR B 95 0 SHEET 2 BB 8 LYS B 84 LEU B 88 -1 O LEU B 86 N GLN B 93 SHEET 3 BB 8 ASN B 73 SER B 79 -1 O LEU B 75 N VAL B 87 SHEET 4 BB 8 GLN B 54 LYS B 68 -1 N LYS B 61 O GLU B 78 SHEET 5 BB 8 GLN C 54 LYS C 68 -1 O ALA C 55 N SER B 57 SHEET 6 BB 8 ASN C 73 SER C 79 -1 O VAL C 74 N THR C 67 SHEET 7 BB 8 LYS C 84 LEU C 88 -1 O VAL C 85 N PHE C 77 SHEET 8 BB 8 VAL C 91 THR C 95 -1 O VAL C 91 N LEU C 88 SHEET 1 BC 5 VAL B 91 THR B 95 0 SHEET 2 BC 5 LYS B 84 LEU B 88 -1 O LEU B 86 N GLN B 93 SHEET 3 BC 5 ASN B 73 SER B 79 -1 O LEU B 75 N VAL B 87 SHEET 4 BC 5 GLN B 54 LYS B 68 -1 N LYS B 61 O GLU B 78 SHEET 5 BC 5 TRP B 43 GLU B 46 -1 O PHE B 44 N LEU B 58 SHEET 1 CA 2 TRP C 43 GLU C 46 0 SHEET 2 CA 2 GLN C 54 LYS C 68 1 O PHE C 56 N GLU C 46 SHEET 1 BD 6 VAL B 91 THR B 95 0 SHEET 2 BD 6 LYS B 84 LEU B 88 -1 O LEU B 86 N GLN B 93 SHEET 3 BD 6 ASN B 73 SER B 79 -1 O LEU B 75 N VAL B 87 SHEET 4 BD 6 GLN B 54 LYS B 68 -1 N LYS B 61 O GLU B 78 SHEET 5 BD 6 GLN C 54 LYS C 68 -1 O ALA C 55 N SER B 57 SHEET 6 BD 6 TRP C 43 GLU C 46 1 O PHE C 44 N LEU C 58 SHEET 1 BE 7 VAL B 172 ILE B 176 0 SHEET 2 BE 7 ASN B 142 GLU B 147 1 O ILE B 143 N ASN B 173 SHEET 3 BE 7 ASN B 119 GLY B 124 1 O VAL B 120 N ASP B 144 SHEET 4 BE 7 TYR B 190 ASP B 196 1 N ASP B 191 O ASN B 119 SHEET 5 BE 7 LEU B 220 GLN B 229 1 N LYS B 221 O TYR B 190 SHEET 6 BE 7 CYS B 268 SER B 275 -1 O LEU B 272 N ALA B 228 SHEET 7 BE 7 LYS B 253 SER B 260 -1 O LYS B 253 N SER B 275 SHEET 1 CB 7 VAL C 172 ILE C 176 0 SHEET 2 CB 7 ASN C 142 GLU C 147 1 O ILE C 143 N ASN C 173 SHEET 3 CB 7 ASN C 119 GLY C 124 1 O VAL C 120 N ASP C 144 SHEET 4 CB 7 TYR C 190 ASP C 196 1 N ASP C 191 O ASN C 119 SHEET 5 CB 7 LEU C 220 GLN C 229 1 N LYS C 221 O TYR C 190 SHEET 6 CB 7 CYS C 268 SER C 275 -1 O LEU C 272 N ALA C 228 SHEET 7 CB 7 LYS C 253 SER C 260 -1 O LYS C 253 N SER C 275 SITE 1 AC1 18 GLN A 72 GLN A 93 GLY A 124 GLY A 125 SITE 2 AC1 18 ASP A 127 CYS A 146 GLU A 147 ILE A 148 SITE 3 AC1 18 VAL A 152 ASP A 178 ALA A 179 ASP A 196 SITE 4 AC1 18 SER A 197 SER A 198 PRO A 203 ALA A 204 SITE 5 AC1 18 THR A 206 LEU A 207 SITE 1 AC2 10 GLN A 93 TYR A 102 ASP A 196 SER A 197 SITE 2 AC2 10 ASP A 199 GLN A 229 TYR A 264 HOH A2008 SITE 3 AC2 10 HOH A2030 HOH A2070 SITE 1 AC3 5 TRP B 234 PHE B 313 HOH B2144 LYS C 97 SITE 2 AC3 5 LYS C 297 SITE 1 AC4 18 GLN B 72 GLY B 124 GLY B 125 ASP B 127 SITE 2 AC4 18 CYS B 146 GLU B 147 ILE B 148 VAL B 152 SITE 3 AC4 18 ASP B 178 ALA B 179 ASP B 196 SER B 197 SITE 4 AC4 18 SER B 198 PRO B 203 ALA B 204 THR B 206 SITE 5 AC4 18 LEU B 207 4ZY B 501 SITE 1 AC5 12 ILE B 92 GLN B 93 TYR B 102 ASP B 196 SITE 2 AC5 12 SER B 197 ASP B 199 GLN B 229 TYR B 264 SITE 3 AC5 12 MTA B 401 HOH B2008 HOH B2032 HOH B2096 SITE 1 AC6 6 TRP B 43 SER B 45 PHE B 47 SER B 57 SITE 2 AC6 6 SER C 45 PHE C 47 SITE 1 AC7 20 GLN C 72 LEU C 88 GLN C 93 GLY C 124 SITE 2 AC7 20 GLY C 125 ASP C 127 CYS C 146 GLU C 147 SITE 3 AC7 20 ILE C 148 VAL C 152 ASP C 178 ALA C 179 SITE 4 AC7 20 ASP C 196 SER C 197 SER C 198 PRO C 203 SITE 5 AC7 20 ALA C 204 THR C 206 LEU C 207 4ZY C 501 SITE 1 AC8 12 VAL C 91 ILE C 92 GLN C 93 TYR C 102 SITE 2 AC8 12 ASP C 196 SER C 197 ASP C 199 TYR C 264 SITE 3 AC8 12 MTA C 401 HOH C2008 HOH C2037 HOH C2094 SITE 1 AC9 6 LYS B 97 PHE B 100 LYS B 297 HOH B2037 SITE 2 AC9 6 TRP C 234 HOH C2114 CRYST1 198.050 134.616 48.306 90.00 95.33 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005049 0.000000 0.000471 0.00000 SCALE2 0.000000 0.007429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020791 0.00000