HEADER VIRAL PROTEIN 05-JUN-14 4UOM TITLE ELECTRON CRYO-MICROSCOPY OF VENEZUELAN EQUINE ENCEPHALITIS VIRUS TC- TITLE 2 83 IN COMPLEX WITH NEUTRALIZING ANTIBODY FAB F5 CAVEAT 4UOM SER L 9 C-ALPHA IS PLANAR ALA L 10 C-ALPHA IS PLANAR ALA L CAVEAT 2 4UOM 112 C-ALPHA IS PLANAR PHE L 135 C-ALPHA IS PLANAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB FRAGMENT HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB FRAGMENT LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PAEV1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PAEV1 KEYWDS VIRAL PROTEIN, ALPHAVIRUS, VENEZUELAN, ANTIBODY NEUTRALIZATION, FAB EXPDTA ELECTRON MICROSCOPY AUTHOR J.PORTA,J.JOSE,J.T.ROEHRIG,C.D.BLAIR,R.J.KUHN,M.G.ROSSMANN REVDAT 2 23-AUG-17 4UOM 1 REMARK REVDAT 1 15-OCT-14 4UOM 0 JRNL AUTH J.PORTA,J.JOSE,J.T.ROEHRIG,C.D.BLAIR,R.J.KUHN,M.G.ROSSMANN JRNL TITL LOCKING AND BLOCKING THE VIRAL LANDSCAPE OF AN ALPHAVIRUS JRNL TITL 2 WITH NEUTRALIZING ANTIBODIES. JRNL REF J.VIROL. V. 88 9616 2014 JRNL REFN ISSN 0022-538X JRNL PMID 24920796 JRNL DOI 10.1128/JVI.01286-14 REMARK 2 REMARK 2 RESOLUTION. 17.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EMAN, EMAN REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : REFINEMENT PROTOCOL--HOMOLOGY REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.070 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 17.00 REMARK 3 NUMBER OF PARTICLES : 1389 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD REMARK 3 -2645. (DEPOSITION ID: 12481). REMARK 4 REMARK 4 4UOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290060879. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : VENEZUELAN EQUINE ENCEPHALITIS REMARK 245 VIRUS STRAIN TC-83 COMPLEXED TO REMARK 245 FAB F5 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.50 REMARK 245 SAMPLE SUPPORT DETAILS : HOLEY CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : LIQUID ETHANE REMARK 245 SAMPLE BUFFER : 0.5 M NACL, 20 MM TRIS PH 7.6, REMARK 245 5 MM EDTA REMARK 245 PH : 7.60 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 14-JUL-12 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 100.00 REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 24.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : 59000 REMARK 245 CALIBRATED MAGNIFICATION : 60521 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE2 TRP H 47 CH2 TRP L 99 0.27 REMARK 500 CD2 TRP H 47 CZ2 TRP L 99 0.81 REMARK 500 NH2 ARG H 50 CB ASP L 93 0.84 REMARK 500 CG TRP H 47 CE2 TRP L 99 0.85 REMARK 500 CA THR L 114 O PHE L 135 0.94 REMARK 500 CB TRP H 47 NE1 TRP L 99 1.00 REMARK 500 CG TRP H 47 CZ2 TRP L 99 1.03 REMARK 500 O THR H 101 CZ3 TRP L 92 1.06 REMARK 500 NH1 ARG H 50 OD1 ASP L 93 1.16 REMARK 500 CZ2 TRP H 47 CH2 TRP L 99 1.19 REMARK 500 O THR H 101 CE3 TRP L 92 1.20 REMARK 500 CE2 TRP H 47 CZ2 TRP L 99 1.21 REMARK 500 CD2 TRP H 47 CH2 TRP L 99 1.43 REMARK 500 CD1 TRP H 47 CZ2 TRP L 99 1.43 REMARK 500 CZ PHE H 102 CD2 LEU L 47 1.44 REMARK 500 CZ ARG H 50 CG ASP L 93 1.45 REMARK 500 CD2 TRP H 47 CE2 TRP L 99 1.50 REMARK 500 NH1 ARG H 50 CG ASP L 93 1.51 REMARK 500 CG TRP H 47 NE1 TRP L 99 1.51 REMARK 500 NE1 TRP H 47 CZ2 TRP L 99 1.51 REMARK 500 NE1 TRP H 47 CH2 TRP L 99 1.56 REMARK 500 NH2 ARG H 50 CG ASP L 93 1.58 REMARK 500 CZ2 TRP H 47 CZ3 TRP L 99 1.59 REMARK 500 CE2 TRP H 47 CZ3 TRP L 99 1.60 REMARK 500 CE1 PHE H 102 CD1 LEU L 47 1.65 REMARK 500 C THR L 114 O PHE L 135 1.68 REMARK 500 CD1 TRP H 47 CE2 TRP L 99 1.69 REMARK 500 CE1 PHE H 102 CD2 LEU L 47 1.70 REMARK 500 CD1 PHE H 102 CD1 LEU L 47 1.70 REMARK 500 C THR H 101 CZ3 TRP L 92 1.72 REMARK 500 C LEU L 110 CA GLY L 111 1.73 REMARK 500 C GLY L 111 CE2 TRP L 163 1.78 REMARK 500 CB TRP H 47 CE2 TRP L 99 1.78 REMARK 500 O LYS L 106 N LEU L 107 1.80 REMARK 500 O PHE L 135 N LEU L 136 1.80 REMARK 500 C GLY L 111 CD2 TRP L 163 1.80 REMARK 500 CZ ARG H 50 CB ASP L 93 1.83 REMARK 500 N THR L 114 O PHE L 135 1.84 REMARK 500 CA GLY L 111 CE2 TRP L 163 1.91 REMARK 500 CZ ARG H 50 OD2 ASP L 93 1.95 REMARK 500 CA GLY L 111 CD2 TRP L 163 1.96 REMARK 500 CE1 PHE H 102 CG LEU L 47 1.99 REMARK 500 C GLY L 111 NE1 TRP L 163 2.03 REMARK 500 OG1 THR L 114 N PHE L 135 2.04 REMARK 500 OG1 THR L 114 C CYS L 134 2.05 REMARK 500 C THR L 114 N PHE L 135 2.06 REMARK 500 O SER L 9 O LYS L 106 2.07 REMARK 500 CE MET H 37 CZ PHE L 101 2.08 REMARK 500 CZ ARG H 50 OD1 ASP L 93 2.08 REMARK 500 NH2 ARG H 50 CE3 TRP L 99 2.09 REMARK 500 REMARK 500 THIS ENTRY HAS 63 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN H 57 C ASN H 57 O -0.272 REMARK 500 PRO L 56 CD PRO L 56 N -0.140 REMARK 500 LYS L 67 CG LYS L 67 CD -0.255 REMARK 500 LYS L 106 N LYS L 106 CA -0.357 REMARK 500 LYS L 106 CB LYS L 106 CG -0.442 REMARK 500 LYS L 106 CG LYS L 106 CD -0.372 REMARK 500 LYS L 106 CE LYS L 106 NZ -0.327 REMARK 500 LYS L 106 CA LYS L 106 C 0.200 REMARK 500 LYS L 106 C LYS L 106 O -0.248 REMARK 500 LEU L 110 C LEU L 110 O -0.128 REMARK 500 GLY L 111 N GLY L 111 CA -0.593 REMARK 500 GLY L 111 CA GLY L 111 C 1.228 REMARK 500 GLY L 111 C GLY L 111 O -0.406 REMARK 500 ALA L 112 N ALA L 112 CA -0.384 REMARK 500 ALA L 112 CA ALA L 112 CB -0.612 REMARK 500 ALA L 112 CA ALA L 112 C 0.287 REMARK 500 ALA L 112 C ALA L 112 O -0.294 REMARK 500 PRO L 113 N PRO L 113 CA -0.258 REMARK 500 PRO L 113 CG PRO L 113 CD -1.030 REMARK 500 PRO L 113 CD PRO L 113 N 0.403 REMARK 500 THR L 114 N THR L 114 CA -0.489 REMARK 500 THR L 114 CA THR L 114 CB 0.548 REMARK 500 THR L 114 CB THR L 114 OG1 0.328 REMARK 500 THR L 114 CB THR L 114 CG2 -0.730 REMARK 500 THR L 114 CA THR L 114 C 0.478 REMARK 500 THR L 114 C THR L 114 O -0.293 REMARK 500 CYS L 134 CA CYS L 134 CB -0.330 REMARK 500 CYS L 134 C CYS L 134 O 0.216 REMARK 500 PHE L 135 N PHE L 135 CA 0.408 REMARK 500 PHE L 135 CA PHE L 135 CB -0.270 REMARK 500 PHE L 135 C LEU L 136 N -0.158 REMARK 500 LEU L 136 CG LEU L 136 CD1 -0.360 REMARK 500 TRP L 163 CB TRP L 163 CG -0.112 REMARK 500 TRP L 163 CG TRP L 163 CD2 0.313 REMARK 500 TRP L 163 CG TRP L 163 CD1 0.274 REMARK 500 TRP L 163 CD1 TRP L 163 NE1 0.252 REMARK 500 TRP L 163 NE1 TRP L 163 CE2 0.286 REMARK 500 TRP L 163 CE2 TRP L 163 CZ2 -0.117 REMARK 500 TRP L 163 CE2 TRP L 163 CD2 0.871 REMARK 500 TRP L 163 CD2 TRP L 163 CE3 -0.199 REMARK 500 MET L 175 CA MET L 175 CB -0.216 REMARK 500 MET L 175 CB MET L 175 CG -0.633 REMARK 500 MET L 175 CG MET L 175 SD 0.758 REMARK 500 MET L 175 SD MET L 175 CE 0.348 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR H 58 CA - CB - CG2 ANGL. DEV. = 9.0 DEGREES REMARK 500 THR H 101 CA - CB - CG2 ANGL. DEV. = 14.7 DEGREES REMARK 500 PHE H 102 CB - CG - CD1 ANGL. DEV. = -7.4 DEGREES REMARK 500 HIS L 8 CB - CA - C ANGL. DEV. = -21.6 DEGREES REMARK 500 HIS L 8 CA - C - O ANGL. DEV. = -14.9 DEGREES REMARK 500 HIS L 8 O - C - N ANGL. DEV. = 11.5 DEGREES REMARK 500 SER L 9 C - N - CA ANGL. DEV. = 18.5 DEGREES REMARK 500 SER L 9 N - CA - C ANGL. DEV. = 40.1 DEGREES REMARK 500 SER L 9 CA - C - O ANGL. DEV. = -13.6 DEGREES REMARK 500 ALA L 10 CB - CA - C ANGL. DEV. = -10.2 DEGREES REMARK 500 ALA L 10 N - CA - CB ANGL. DEV. = 19.4 DEGREES REMARK 500 ALA L 10 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 ASN L 32 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 ASN L 32 CB - CG - OD1 ANGL. DEV. = -13.5 DEGREES REMARK 500 THR L 33 OG1 - CB - CG2 ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO L 56 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO L 56 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 PRO L 56 N - CD - CG ANGL. DEV. = 10.1 DEGREES REMARK 500 LYS L 67 CG - CD - CE ANGL. DEV. = 36.3 DEGREES REMARK 500 LYS L 67 CD - CE - NZ ANGL. DEV. = 14.1 DEGREES REMARK 500 ALA L 72 N - CA - CB ANGL. DEV. = -10.0 DEGREES REMARK 500 LYS L 106 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 LYS L 106 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 LYS L 106 O - C - N ANGL. DEV. = -21.9 DEGREES REMARK 500 GLY L 111 N - CA - C ANGL. DEV. = 30.3 DEGREES REMARK 500 GLY L 111 CA - C - O ANGL. DEV. = 21.3 DEGREES REMARK 500 GLY L 111 O - C - N ANGL. DEV. = -12.4 DEGREES REMARK 500 ALA L 112 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ALA L 112 N - CA - CB ANGL. DEV. = 22.6 DEGREES REMARK 500 ALA L 112 CA - C - O ANGL. DEV. = -32.7 DEGREES REMARK 500 PRO L 113 CA - N - CD ANGL. DEV. = -23.4 DEGREES REMARK 500 PRO L 113 N - CA - CB ANGL. DEV. = -22.8 DEGREES REMARK 500 PRO L 113 CB - CG - CD ANGL. DEV. = -26.0 DEGREES REMARK 500 PRO L 113 N - CD - CG ANGL. DEV. = 40.4 DEGREES REMARK 500 THR L 114 CA - C - N ANGL. DEV. = 14.1 DEGREES REMARK 500 THR L 114 O - C - N ANGL. DEV. = -12.0 DEGREES REMARK 500 VAL L 115 C - N - CA ANGL. DEV. = 21.9 DEGREES REMARK 500 VAL L 115 N - CA - CB ANGL. DEV. = -14.0 DEGREES REMARK 500 VAL L 115 CG1 - CB - CG2 ANGL. DEV. = -10.3 DEGREES REMARK 500 VAL L 115 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 CYS L 134 CB - CA - C ANGL. DEV. = -22.9 DEGREES REMARK 500 CYS L 134 N - CA - CB ANGL. DEV. = 22.4 DEGREES REMARK 500 CYS L 134 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 CYS L 134 CA - C - O ANGL. DEV. = -18.5 DEGREES REMARK 500 PHE L 135 CB - CA - C ANGL. DEV. = 23.4 DEGREES REMARK 500 PHE L 135 N - CA - CB ANGL. DEV. = 12.8 DEGREES REMARK 500 PHE L 135 CA - CB - CG ANGL. DEV. = 18.2 DEGREES REMARK 500 PHE L 135 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 PHE L 135 CA - C - O ANGL. DEV. = -43.3 DEGREES REMARK 500 PHE L 135 CA - C - N ANGL. DEV. = 45.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 65 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU H 10 -164.36 138.93 REMARK 500 PRO H 53 65.51 -69.29 REMARK 500 ASN H 57 -4.80 -160.85 REMARK 500 ALA H 92 172.75 173.67 REMARK 500 ARG H 98 75.03 -117.21 REMARK 500 THR H 101 -35.69 -132.33 REMARK 500 PHE H 102 104.33 112.87 REMARK 500 ASN H 136 -150.15 53.99 REMARK 500 SER H 137 -91.58 18.54 REMARK 500 SER H 206 17.70 58.75 REMARK 500 SER L 9 -75.33 -97.64 REMARK 500 ALA L 10 71.91 67.52 REMARK 500 ASP L 15 -25.48 102.36 REMARK 500 ASN L 32 -101.69 -73.68 REMARK 500 THR L 33 75.21 -158.18 REMARK 500 LYS L 52 -53.93 77.79 REMARK 500 LYS L 67 176.97 122.13 REMARK 500 ALA L 85 -154.22 147.85 REMARK 500 ALA L 91 -166.55 -110.98 REMARK 500 SER L 95 -87.15 -92.48 REMARK 500 THR L 105 106.11 -54.19 REMARK 500 LYS L 106 54.05 -1.95 REMARK 500 VAL L 109 -157.12 -162.84 REMARK 500 SER L 116 132.00 154.95 REMARK 500 SER L 162 118.11 -161.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY L 111 ALA L 112 -145.19 REMARK 500 THR L 114 VAL L 115 149.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR H 33 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO H 9 -11.54 REMARK 500 HIS L 8 -12.07 REMARK 500 LYS L 106 -12.65 REMARK 500 PRO L 113 -20.01 REMARK 500 VAL L 115 -12.65 REMARK 500 PHE L 135 102.87 REMARK 500 MET L 175 12.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UOK RELATED DB: PDB REMARK 900 ELECTRON CRYO-MICROSCOPY OF VENEZUELAN EQUINE ENCEPHALITIS VIRUS TC- REMARK 900 83 IN COMPLEX WITH NEUTRALIZING ANTIBODY FAB 3B4C-4 REMARK 900 RELATED ID: EMD-2645 RELATED DB: EMDB DBREF 4UOM H 1 217 PDB 4UOM 4UOM 1 217 DBREF 4UOM L 7 211 PDB 4UOM 4UOM 7 211 SEQRES 1 H 217 GLU VAL GLN LEU GLN GLN SER GLY PRO GLU LEU VAL LYS SEQRES 2 H 217 PRO GLY ALA SER VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 H 217 TYR THR PHE THR ASP TYR TYR ILE ASN TRP MET LYS GLN SEQRES 4 H 217 LYS PRO GLY GLN GLY LEU GLU TRP ILE GLY ARG ILE TYR SEQRES 5 H 217 PRO GLY TYR GLY ASN THR LYS TYR ASN ASP LYS PHE LYS SEQRES 6 H 217 GLY LYS ALA THR LEU THR GLU ASP THR SER SER ASN THR SEQRES 7 H 217 ALA TYR MET GLN LEU ASN SER LEU THR SER GLU ASP THR SEQRES 8 H 217 ALA VAL TYR PHE CYS ALA ARG SER LEU THR PHE PHE ASP SEQRES 9 H 217 VAL TRP GLY ALA GLY THR THR VAL THR VAL SER SER ALA SEQRES 10 H 217 LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SEQRES 11 H 217 SER ALA ALA GLN THR ASN SER MET VAL THR LEU GLY CYS SEQRES 12 H 217 LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR SEQRES 13 H 217 TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE SEQRES 14 H 217 PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SEQRES 15 H 217 SER VAL THR VAL PRO SER SER THR TRP PRO SER GLU THR SEQRES 16 H 217 VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS SEQRES 17 H 217 VAL ASP LYS LYS ILE VAL PRO ARG ASP SEQRES 1 L 205 PRO HIS SER ALA SER GLY PRO PRO ASP GLN THR VAL THR SEQRES 2 L 205 ILE SER CYS SER GLY SER SER SER ASN ILE GLU GLY ASN SEQRES 3 L 205 THR VAL ASN TRP TYR GLN GLN PHE PRO GLY LYS ALA PRO SEQRES 4 L 205 GLN LEU LEU ILE TYR GLY LYS ASP GLN ARG PRO SER GLY SEQRES 5 L 205 VAL PRO ASP ARG PHE SER ALA SER LYS SER GLY THR SER SEQRES 6 L 205 ALA SER LEU THR ILE SER GLY LEU GLN ALA GLU ASP GLU SEQRES 7 L 205 ALA ASP TYR TYR CYS ALA ALA TRP ASP ASP SER LEU ASN SEQRES 8 L 205 GLY TRP VAL PHE GLY GLY GLY THR LYS LEU THR VAL LEU SEQRES 9 L 205 GLY ALA PRO THR VAL SER ILE PHE PRO PRO SER SER GLU SEQRES 10 L 205 GLN LEU THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU SEQRES 11 L 205 ASN ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS SEQRES 12 L 205 ILE ASP GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER SEQRES 13 L 205 TRP THR ASP GLN ASP SER LYS ASP SER THR TYR SER MET SEQRES 14 L 205 SER SER THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG SEQRES 15 L 205 HIS ASN SER TYR THR CYS GLU ALA THR HIS LYS THR SER SEQRES 16 L 205 THR SER PRO ILE VAL LYS SER PHE ASN ARG HELIX 1 1 THR H 28 TYR H 32 5 5 HELIX 2 2 ASP H 62 PHE H 64 5 3 HELIX 3 3 THR H 87 THR H 91 5 5 HELIX 4 4 SER H 159 SER H 161 5 3 HELIX 5 5 PRO H 203 SER H 206 5 4 HELIX 6 6 GLN L 80 GLU L 84 5 5 HELIX 7 7 SER L 121 THR L 126 1 6 HELIX 8 8 LYS L 183 GLU L 187 1 5 SHEET 1 HA 4 GLN H 3 SER H 7 0 SHEET 2 HA 4 VAL H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 HA 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 HA 4 ALA H 68 ASP H 73 -1 O THR H 69 N GLN H 82 SHEET 1 HB 4 GLU H 10 VAL H 12 0 SHEET 2 HB 4 THR H 110 VAL H 114 -1 O THR H 113 N VAL H 12 SHEET 3 HB 4 ALA H 92 SER H 99 -1 O ALA H 92 N VAL H 112 SHEET 4 HB 4 PHE H 103 TRP H 106 -1 O VAL H 105 N ARG H 98 SHEET 1 HC 6 GLU H 10 VAL H 12 0 SHEET 2 HC 6 THR H 110 VAL H 114 -1 O THR H 113 N VAL H 12 SHEET 3 HC 6 ALA H 92 SER H 99 -1 O ALA H 92 N VAL H 112 SHEET 4 HC 6 ILE H 34 GLN H 39 -1 O ASN H 35 N ALA H 97 SHEET 5 HC 6 LEU H 45 ILE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 HC 6 LYS H 59 TYR H 60 -1 O LYS H 59 N ARG H 50 SHEET 1 HD 2 PHE H 103 TRP H 106 0 SHEET 2 HD 2 ALA H 92 SER H 99 -1 O ARG H 98 N ASP H 104 SHEET 1 HE 4 SER H 123 LEU H 127 0 SHEET 2 HE 4 MET H 138 TYR H 148 -1 O GLY H 142 N LEU H 127 SHEET 3 HE 4 LEU H 177 PRO H 187 -1 O TYR H 178 N TYR H 148 SHEET 4 HE 4 VAL H 172 GLN H 174 1 O VAL H 172 N THR H 179 SHEET 1 HF 4 SER H 123 LEU H 127 0 SHEET 2 HF 4 MET H 138 TYR H 148 -1 O GLY H 142 N LEU H 127 SHEET 3 HF 4 LEU H 177 PRO H 187 -1 O TYR H 178 N TYR H 148 SHEET 4 HF 4 VAL H 166 THR H 168 -1 O HIS H 167 N SER H 183 SHEET 1 HG 2 VAL H 172 GLN H 174 0 SHEET 2 HG 2 LEU H 177 PRO H 187 1 O LEU H 177 N GLN H 174 SHEET 1 HH 3 THR H 154 TRP H 157 0 SHEET 2 HH 3 THR H 197 HIS H 202 -1 O ASN H 199 N THR H 156 SHEET 3 HH 3 THR H 207 LYS H 212 -1 O THR H 207 N HIS H 202 SHEET 1 LA 3 VAL L 18 SER L 23 0 SHEET 2 LA 3 SER L 71 ILE L 76 -1 O ALA L 72 N CYS L 22 SHEET 3 LA 3 PHE L 63 SER L 68 -1 O SER L 64 N THR L 75 SHEET 1 LB 3 GLN L 46 ILE L 49 0 SHEET 2 LB 3 VAL L 34 GLN L 39 -1 O TRP L 36 N LEU L 48 SHEET 3 LB 3 ASP L 86 ALA L 91 -1 O ASP L 86 N GLN L 39 SHEET 1 LC 4 ILE L 117 PHE L 118 0 SHEET 2 LC 4 GLY L 129 CYS L 134 -1 O VAL L 133 N PHE L 118 SHEET 3 LC 4 MET L 175 THR L 182 -1 O SER L 177 N CYS L 134 SHEET 4 LC 4 VAL L 159 TRP L 163 -1 O LEU L 160 N THR L 178 SHEET 1 LD 4 SER L 153 ARG L 155 0 SHEET 2 LD 4 ASN L 145 ILE L 150 -1 O TRP L 148 N ARG L 155 SHEET 3 LD 4 SER L 191 THR L 197 -1 O THR L 193 N LYS L 149 SHEET 4 LD 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SSBOND 1 CYS L 22 CYS L 89 1555 1555 2.04 SSBOND 2 CYS L 134 CYS L 194 1555 1555 1.97 CISPEP 1 THR H 101 PHE H 102 0 -27.45 CISPEP 2 PHE H 149 PRO H 150 0 -3.16 CISPEP 3 GLU H 151 PRO H 152 0 -1.78 CISPEP 4 TRP H 191 PRO H 192 0 -0.91 CISPEP 5 ASN L 32 THR L 33 0 -25.99 CISPEP 6 ASN L 97 GLY L 98 0 1.90 CISPEP 7 TYR L 140 PRO L 141 0 0.76 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000