HEADER PROTEIN BINDING 16-JUN-14 4UPC OBSLTE 28-DEC-16 4UPC 5A63 TITLE STRUCTURE OF A EXTRACELLULAR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICASTRIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: HEK 293F; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PMLINK KEYWDS PROTEIN BINDING EXPDTA ELECTRON MICROSCOPY AUTHOR P.LU,X.C.BAI,D.MA,T.XIE,C.YAN,L.SUN,G.YANG,Y.ZHAO,R.ZHOU, AUTHOR 2 S.H.W.SCHERES,Y.SHI REVDAT 5 28-DEC-16 4UPC 1 REVDAT 4 20-AUG-14 4UPC 1 JRNL REVDAT 3 30-JUL-14 4UPC 1 JRNL REVDAT 2 16-JUL-14 4UPC 1 REMARK REVDAT 1 25-JUN-14 4UPC 0 JRNL AUTH P.LU,X.-C.BAI,D.MA,T.XIE,C.YAN,L.SUN,G.YANG,Y.ZHAO,R.ZHOU, JRNL AUTH 2 S.H.W.SCHERES,Y.SHI JRNL TITL THREE-DIMENSIONAL STRUCTURE OF HUMAN GAMMA-SECRETASE JRNL REF NATURE V. 512 166 2014 JRNL REFN ISSN 0028-0836 JRNL PMID 25043039 JRNL DOI 10.1038/NATURE13567 REMARK 2 REMARK 2 RESOLUTION. 5.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CTFFIND, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 5.400 REMARK 3 NUMBER OF PARTICLES : 37310 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD REMARK 3 -2677. (DEPOSITION ID: 12572). REMARK 4 REMARK 4 4UPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-DEC-16. REMARK 100 THE PDBE ID CODE IS EBI-60946. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : CRYO EM REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN GAMMA-SECRETASE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 6.00 REMARK 245 SAMPLE SUPPORT DETAILS : HOLEY CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : VITRIFICATION 1 -- CRYOGEN- REMARK 245 ETHANE, HUMIDITY- 100, REMARK 245 TEMPERATURE- 90, INSTRUMENT- REMARK 245 FEI VITROBOT MARK IV, METHOD- REMARK 245 BLOT FOR 4S BEFORE PLUNGING, REMARK 245 SAMPLE BUFFER : 25 MM HEPES, PH 7.4, 150 MM REMARK 245 NACL AND AMPHIPOL A8-35 REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 26-FEB-14 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 85.00 REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1400.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4400.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : OTHER REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 38.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 64000 REMARK 245 CALIBRATED MAGNIFICATION : 28409 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 ASP A 11 REMARK 465 PRO A 12 REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 ARG A 15 REMARK 465 GLY A 16 REMARK 465 LEU A 17 REMARK 465 LEU A 18 REMARK 465 ARG A 19 REMARK 465 LEU A 20 REMARK 465 LEU A 21 REMARK 465 SER A 22 REMARK 465 PHE A 23 REMARK 465 CYS A 24 REMARK 465 VAL A 25 REMARK 465 LEU A 26 REMARK 465 LEU A 27 REMARK 465 ALA A 28 REMARK 465 GLY A 29 REMARK 465 LEU A 30 REMARK 465 CYS A 31 REMARK 465 ARG A 32 REMARK 465 GLY A 33 REMARK 465 ASN A 34 REMARK 465 SER A 35 REMARK 465 VAL A 36 REMARK 465 GLU A 37 REMARK 465 ARG A 38 REMARK 465 LYS A 39 REMARK 465 ILE A 40 REMARK 465 TYR A 41 REMARK 465 ARG A 52 REMARK 465 LEU A 53 REMARK 465 LEU A 54 REMARK 465 ASN A 55 REMARK 465 ALA A 56 REMARK 465 THR A 57 REMARK 465 HIS A 58 REMARK 465 GLN A 59 REMARK 465 ILE A 60 REMARK 465 GLY A 61 REMARK 465 GLY A 120 REMARK 465 LEU A 121 REMARK 465 SER A 137 REMARK 465 VAL A 138 REMARK 465 GLN A 139 REMARK 465 CYS A 140 REMARK 465 PRO A 141 REMARK 465 ASN A 142 REMARK 465 ASP A 143 REMARK 465 GLY A 144 REMARK 465 PHE A 145 REMARK 465 GLY A 146 REMARK 465 VAL A 147 REMARK 465 TYR A 148 REMARK 465 SER A 149 REMARK 465 ASN A 150 REMARK 465 SER A 151 REMARK 465 TYR A 152 REMARK 465 GLY A 153 REMARK 465 PRO A 154 REMARK 465 GLU A 155 REMARK 465 PHE A 156 REMARK 465 ALA A 157 REMARK 465 HIS A 158 REMARK 465 CYS A 159 REMARK 465 ARG A 160 REMARK 465 GLU A 161 REMARK 465 ILE A 162 REMARK 465 GLN A 163 REMARK 465 TRP A 164 REMARK 465 ASN A 165 REMARK 465 SER A 166 REMARK 465 LEU A 167 REMARK 465 GLY A 168 REMARK 465 ALA A 200 REMARK 465 PRO A 201 REMARK 465 THR A 202 REMARK 465 PHE A 203 REMARK 465 PRO A 204 REMARK 465 LEU A 205 REMARK 465 HIS A 222 REMARK 465 ALA A 223 REMARK 465 VAL A 224 REMARK 465 ILE A 225 REMARK 465 SER A 226 REMARK 465 ASN A 243 REMARK 465 PRO A 244 REMARK 465 GLU A 245 REMARK 465 ILE A 246 REMARK 465 PRO A 262 REMARK 465 ILE A 263 REMARK 465 ASN A 264 REMARK 465 THR A 265 REMARK 465 THR A 266 REMARK 465 GLY A 267 REMARK 465 THR A 268 REMARK 465 LEU A 269 REMARK 465 LYS A 270 REMARK 465 PRO A 271 REMARK 465 ASP A 272 REMARK 465 ASP A 273 REMARK 465 ARG A 274 REMARK 465 LYS A 351 REMARK 465 PHE A 352 REMARK 465 PRO A 353 REMARK 465 VAL A 354 REMARK 465 GLN A 355 REMARK 465 LEU A 356 REMARK 465 GLU A 357 REMARK 465 ASN A 358 REMARK 465 VAL A 359 REMARK 465 ASP A 360 REMARK 465 SER A 361 REMARK 465 PHE A 362 REMARK 465 VAL A 363 REMARK 465 GLU A 364 REMARK 465 LEU A 365 REMARK 465 GLY A 366 REMARK 465 GLN A 367 REMARK 465 VAL A 368 REMARK 465 ALA A 369 REMARK 465 LEU A 370 REMARK 465 ARG A 371 REMARK 465 THR A 372 REMARK 465 SER A 373 REMARK 465 LEU A 374 REMARK 465 GLU A 375 REMARK 465 LEU A 376 REMARK 465 TRP A 377 REMARK 465 MET A 378 REMARK 465 HIS A 379 REMARK 465 THR A 380 REMARK 465 ASP A 381 REMARK 465 ASN A 392 REMARK 465 GLN A 393 REMARK 465 VAL A 394 REMARK 465 GLU A 395 REMARK 465 ASP A 396 REMARK 465 LEU A 397 REMARK 465 LEU A 398 REMARK 465 ALA A 399 REMARK 465 THR A 400 REMARK 465 SER A 425 REMARK 465 SER A 426 REMARK 465 LEU A 427 REMARK 465 GLN A 428 REMARK 465 ARG A 429 REMARK 465 PHE A 430 REMARK 465 LEU A 431 REMARK 465 LEU A 501 REMARK 465 ALA A 502 REMARK 465 GLY A 503 REMARK 465 GLY A 504 REMARK 465 THR A 505 REMARK 465 ASN A 506 REMARK 465 PHE A 507 REMARK 465 SER A 508 REMARK 465 ARG A 520 REMARK 465 ALA A 529 REMARK 465 ASN A 530 REMARK 465 ASN A 531 REMARK 465 SER A 532 REMARK 465 TRP A 533 REMARK 465 PHE A 534 REMARK 465 GLN A 535 REMARK 465 SER A 536 REMARK 465 ILE A 537 REMARK 465 LEU A 538 REMARK 465 ARG A 539 REMARK 465 GLN A 540 REMARK 465 ASP A 541 REMARK 465 LEU A 542 REMARK 465 ARG A 543 REMARK 465 SER A 544 REMARK 465 TYR A 545 REMARK 465 LEU A 546 REMARK 465 GLY A 547 REMARK 465 ASP A 548 REMARK 465 GLY A 549 REMARK 465 SER A 558 REMARK 465 SER A 559 REMARK 465 PRO A 560 REMARK 465 THR A 561 REMARK 465 ASN A 562 REMARK 465 THR A 563 REMARK 465 THR A 564 REMARK 465 TYR A 565 REMARK 465 VAL A 566 REMARK 465 THR A 582 REMARK 465 ARG A 583 REMARK 465 GLU A 584 REMARK 465 GLN A 585 REMARK 465 CYS A 586 REMARK 465 GLN A 587 REMARK 465 ASP A 588 REMARK 465 PRO A 589 REMARK 465 SER A 590 REMARK 465 LYS A 591 REMARK 465 VAL A 592 REMARK 465 PRO A 593 REMARK 465 SER A 594 REMARK 465 GLU A 595 REMARK 465 ASN A 596 REMARK 465 LYS A 597 REMARK 465 ASP A 598 REMARK 465 LEU A 599 REMARK 465 TYR A 600 REMARK 465 GLU A 601 REMARK 465 TYR A 602 REMARK 465 SER A 603 REMARK 465 TRP A 604 REMARK 465 VAL A 605 REMARK 465 GLN A 606 REMARK 465 GLY A 607 REMARK 465 PRO A 608 REMARK 465 LEU A 609 REMARK 465 HIS A 610 REMARK 465 SER A 611 REMARK 465 ASN A 612 REMARK 465 GLU A 613 REMARK 465 THR A 614 REMARK 465 ASP A 615 REMARK 465 ARG A 616 REMARK 465 LEU A 617 REMARK 465 PRO A 618 REMARK 465 ARG A 619 REMARK 465 LEU A 631 REMARK 465 SER A 632 REMARK 465 PRO A 633 REMARK 465 ALA A 634 REMARK 465 PHE A 635 REMARK 465 GLU A 636 REMARK 465 LEU A 637 REMARK 465 SER A 638 REMARK 465 GLN A 639 REMARK 465 ILE A 663 REMARK 465 ALA A 664 REMARK 465 SER A 665 REMARK 465 LYS A 666 REMARK 465 GLU A 667 REMARK 465 LEU A 668 REMARK 465 GLU A 669 REMARK 465 LEU A 670 REMARK 465 ILE A 671 REMARK 465 THR A 672 REMARK 465 LEU A 673 REMARK 465 THR A 674 REMARK 465 VAL A 675 REMARK 465 GLY A 676 REMARK 465 PHE A 677 REMARK 465 GLY A 678 REMARK 465 ILE A 679 REMARK 465 LEU A 680 REMARK 465 ILE A 681 REMARK 465 PHE A 682 REMARK 465 SER A 683 REMARK 465 LEU A 684 REMARK 465 ILE A 685 REMARK 465 VAL A 686 REMARK 465 THR A 687 REMARK 465 TYR A 688 REMARK 465 CYS A 689 REMARK 465 ILE A 690 REMARK 465 ASN A 691 REMARK 465 ALA A 692 REMARK 465 LYS A 693 REMARK 465 ALA A 694 REMARK 465 ASP A 695 REMARK 465 VAL A 696 REMARK 465 LEU A 697 REMARK 465 PHE A 698 REMARK 465 ILE A 699 REMARK 465 ALA A 700 REMARK 465 PRO A 701 REMARK 465 ARG A 702 REMARK 465 GLU A 703 REMARK 465 PRO A 704 REMARK 465 GLY A 705 REMARK 465 ALA A 706 REMARK 465 VAL A 707 REMARK 465 SER A 708 REMARK 465 TYR A 709 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 227 OG1 CG2 REMARK 470 THR A 229 OG1 CG2 REMARK 470 CYS A 230 SG REMARK 470 MET A 231 CG SD CE REMARK 470 ARG A 232 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 SER A 234 OG REMARK 470 SER A 235 OG REMARK 470 ILE A 236 CG1 CG2 CD1 REMARK 470 GLN A 237 CG CD OE1 NE2 REMARK 470 SER A 238 OG REMARK 470 THR A 239 OG1 CG2 REMARK 470 PHE A 240 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 241 OG REMARK 470 ILE A 242 CG1 CG2 CD1 REMARK 470 PHE A 288 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 629 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 640 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 640 CZ3 CH2 REMARK 470 SER A 641 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 190 OD1 ASN A 193 1.41 REMARK 500 CB PRO A 382 NH2 ARG A 415 1.63 REMARK 500 NE ARG A 626 O SER A 646 1.80 REMARK 500 CE1 PHE A 218 NE ARG A 657 1.81 REMARK 500 OD2 ASP A 253 CG2 ILE A 555 1.81 REMARK 500 NH1 ARG A 281 OD1 ASP A 443 1.89 REMARK 500 CZ PHE A 218 NE ARG A 657 1.97 REMARK 500 O ALA A 298 OG SER A 301 1.99 REMARK 500 O TYR A 254 CD2 LEU A 571 2.03 REMARK 500 CA PRO A 382 NH2 ARG A 415 2.06 REMARK 500 NZ LYS A 403 CG2 VAL A 490 2.07 REMARK 500 OE1 GLU A 474 N ASP A 476 2.08 REMARK 500 CE MET A 326 CG1 VAL A 328 2.12 REMARK 500 CE2 PHE A 218 NH2 ARG A 657 2.14 REMARK 500 NH2 ARG A 626 N SER A 646 2.15 REMARK 500 O VAL A 328 CE1 PHE A 330 2.18 REMARK 500 O ALA A 214 O PHE A 661 2.19 REMARK 500 OG SER A 100 O LEU A 125 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 257 CB TRP A 257 CG -0.149 REMARK 500 GLU A 474 CB GLU A 474 CG 0.115 REMARK 500 GLU A 650 CB GLU A 650 CG -0.125 REMARK 500 TRP A 653 CB TRP A 653 CG -0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 50 CA - CB - SG ANGL. DEV. = 11.9 DEGREES REMARK 500 CYS A 62 CA - CB - SG ANGL. DEV. = 14.9 DEGREES REMARK 500 LEU A 111 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 PRO A 130 C - N - CA ANGL. DEV. = -9.2 DEGREES REMARK 500 MET A 215 CA - CB - CG ANGL. DEV. = 10.9 DEGREES REMARK 500 LEU A 217 CB - CG - CD1 ANGL. DEV. = -12.8 DEGREES REMARK 500 MET A 221 CG - SD - CE ANGL. DEV. = -11.4 DEGREES REMARK 500 LEU A 282 CB - CG - CD2 ANGL. DEV. = 17.7 DEGREES REMARK 500 PRO A 293 C - N - CA ANGL. DEV. = -16.3 DEGREES REMARK 500 TYR A 337 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 PRO A 409 C - N - CA ANGL. DEV. = 13.9 DEGREES REMARK 500 PRO A 409 C - N - CD ANGL. DEV. = -34.7 DEGREES REMARK 500 PRO A 409 CA - N - CD ANGL. DEV. = -10.6 DEGREES REMARK 500 PRO A 424 C - N - CA ANGL. DEV. = -13.4 DEGREES REMARK 500 GLU A 461 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 PRO A 473 C - N - CD ANGL. DEV. = -18.9 DEGREES REMARK 500 LEU A 477 CB - CG - CD2 ANGL. DEV. = -12.6 DEGREES REMARK 500 LEU A 494 CA - CB - CG ANGL. DEV. = 17.5 DEGREES REMARK 500 LEU A 521 CA - CB - CG ANGL. DEV. = 19.8 DEGREES REMARK 500 LEU A 522 CB - CG - CD1 ANGL. DEV. = -13.6 DEGREES REMARK 500 LEU A 526 CB - CG - CD2 ANGL. DEV. = 14.3 DEGREES REMARK 500 LEU A 551 CA - CB - CG ANGL. DEV. = -20.2 DEGREES REMARK 500 TRP A 653 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 67 1.01 92.31 REMARK 500 LEU A 86 -91.41 -67.60 REMARK 500 ASP A 88 91.85 -69.08 REMARK 500 PRO A 90 -62.43 -134.11 REMARK 500 THR A 115 -76.39 -78.47 REMARK 500 ILE A 118 -110.51 -87.04 REMARK 500 THR A 126 21.53 -70.69 REMARK 500 TYR A 173 31.89 -96.24 REMARK 500 SER A 219 65.52 -156.01 REMARK 500 SER A 252 -163.98 171.70 REMARK 500 ASP A 253 -150.82 174.55 REMARK 500 ASP A 283 -73.87 -164.39 REMARK 500 SER A 284 175.16 62.71 REMARK 500 TRP A 289 120.80 62.44 REMARK 500 VAL A 291 -90.65 -110.01 REMARK 500 ALA A 292 78.23 -171.91 REMARK 500 ALA A 298 -46.54 -142.70 REMARK 500 THR A 319 -43.37 -26.94 REMARK 500 THR A 320 105.29 -165.69 REMARK 500 PRO A 322 -49.19 -19.13 REMARK 500 VAL A 328 123.14 175.61 REMARK 500 GLN A 331 132.05 -37.48 REMARK 500 PHE A 335 -93.89 -83.55 REMARK 500 ASP A 336 -74.65 -89.49 REMARK 500 TYR A 337 35.80 162.04 REMARK 500 GLU A 388 94.75 67.84 REMARK 500 PRO A 409 -153.35 76.95 REMARK 500 ALA A 442 -134.35 -74.28 REMARK 500 ALA A 447 58.17 162.41 REMARK 500 GLN A 454 -113.21 93.40 REMARK 500 SER A 455 153.96 174.11 REMARK 500 ILE A 456 127.81 -10.83 REMARK 500 VAL A 465 -101.23 -111.39 REMARK 500 LEU A 477 19.17 -142.57 REMARK 500 ASN A 478 179.34 54.20 REMARK 500 VAL A 511 114.72 -166.48 REMARK 500 ALA A 556 -152.02 58.13 REMARK 500 ALA A 625 121.83 -8.25 REMARK 500 ARG A 626 125.41 -24.06 REMARK 500 ARG A 629 150.80 -27.23 REMARK 500 THR A 643 1.27 -155.25 REMARK 500 LYS A 654 -79.22 -82.34 REMARK 500 PHE A 661 160.68 -45.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 328 PHE A 329 -149.81 REMARK 500 PHE A 329 PHE A 330 -141.49 REMARK 500 LEU A 477 ASN A 478 147.97 REMARK 500 ALA A 484 LYS A 485 -149.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-2677 RELATED DB: EMDB DBREF 4UPC A 1 709 UNP Q92542 NICA_HUMAN 1 709 SEQADV 4UPC ASN A 193 UNP Q92542 LYS 193 CONFLICT SEQADV 4UPC A UNP Q92542 GLN 194 DELETION SEQADV 4UPC A UNP Q92542 CYS 195 DELETION SEQADV 4UPC A UNP Q92542 TYR 196 DELETION SEQADV 4UPC A UNP Q92542 GLN 197 DELETION SEQADV 4UPC A UNP Q92542 ASP 198 DELETION SEQADV 4UPC A UNP Q92542 HIS 199 DELETION SEQADV 4UPC A UNP Q92542 ASN 200 DELETION SEQADV 4UPC ASN A 261 UNP Q92542 LYS 261 CONFLICT SEQRES 1 A 702 MET ALA THR ALA GLY GLY GLY SER GLY ALA ASP PRO GLY SEQRES 2 A 702 SER ARG GLY LEU LEU ARG LEU LEU SER PHE CYS VAL LEU SEQRES 3 A 702 LEU ALA GLY LEU CYS ARG GLY ASN SER VAL GLU ARG LYS SEQRES 4 A 702 ILE TYR ILE PRO LEU ASN LYS THR ALA PRO CYS VAL ARG SEQRES 5 A 702 LEU LEU ASN ALA THR HIS GLN ILE GLY CYS GLN SER SER SEQRES 6 A 702 ILE SER GLY ASP THR GLY VAL ILE HIS VAL VAL GLU LYS SEQRES 7 A 702 GLU GLU ASP LEU GLN TRP VAL LEU THR ASP GLY PRO ASN SEQRES 8 A 702 PRO PRO TYR MET VAL LEU LEU GLU SER LYS HIS PHE THR SEQRES 9 A 702 ARG ASP LEU MET GLU LYS LEU LYS GLY ARG THR SER ARG SEQRES 10 A 702 ILE ALA GLY LEU ALA VAL SER LEU THR LYS PRO SER PRO SEQRES 11 A 702 ALA SER GLY PHE SER PRO SER VAL GLN CYS PRO ASN ASP SEQRES 12 A 702 GLY PHE GLY VAL TYR SER ASN SER TYR GLY PRO GLU PHE SEQRES 13 A 702 ALA HIS CYS ARG GLU ILE GLN TRP ASN SER LEU GLY ASN SEQRES 14 A 702 GLY LEU ALA TYR GLU ASP PHE SER PHE PRO ILE PHE LEU SEQRES 15 A 702 LEU GLU ASP GLU ASN GLU THR LYS VAL ILE ASN LEU SER SEQRES 16 A 702 GLN ASN GLY SER ALA PRO THR PHE PRO LEU CYS ALA MET SEQRES 17 A 702 GLN LEU PHE SER HIS MET HIS ALA VAL ILE SER THR ALA SEQRES 18 A 702 THR CYS MET ARG ARG SER SER ILE GLN SER THR PHE SER SEQRES 19 A 702 ILE ASN PRO GLU ILE VAL CYS ASP PRO LEU SER ASP TYR SEQRES 20 A 702 ASN VAL TRP SER MET LEU ASN PRO ILE ASN THR THR GLY SEQRES 21 A 702 THR LEU LYS PRO ASP ASP ARG VAL VAL VAL ALA ALA THR SEQRES 22 A 702 ARG LEU ASP SER ARG SER PHE PHE TRP ASN VAL ALA PRO SEQRES 23 A 702 GLY ALA GLU SER ALA VAL ALA SER PHE VAL THR GLN LEU SEQRES 24 A 702 ALA ALA ALA GLU ALA LEU GLN LYS ALA PRO ASP VAL THR SEQRES 25 A 702 THR LEU PRO ARG ASN VAL MET PHE VAL PHE PHE GLN GLY SEQRES 26 A 702 GLU THR PHE ASP TYR ILE GLY SER SER ARG MET VAL TYR SEQRES 27 A 702 ASP MET GLU LYS GLY LYS PHE PRO VAL GLN LEU GLU ASN SEQRES 28 A 702 VAL ASP SER PHE VAL GLU LEU GLY GLN VAL ALA LEU ARG SEQRES 29 A 702 THR SER LEU GLU LEU TRP MET HIS THR ASP PRO VAL SER SEQRES 30 A 702 GLN LYS ASN GLU SER VAL ARG ASN GLN VAL GLU ASP LEU SEQRES 31 A 702 LEU ALA THR LEU GLU LYS SER GLY ALA GLY VAL PRO ALA SEQRES 32 A 702 VAL ILE LEU ARG ARG PRO ASN GLN SER GLN PRO LEU PRO SEQRES 33 A 702 PRO SER SER LEU GLN ARG PHE LEU ARG ALA ARG ASN ILE SEQRES 34 A 702 SER GLY VAL VAL LEU ALA ASP HIS SER GLY ALA PHE HIS SEQRES 35 A 702 ASN LYS TYR TYR GLN SER ILE TYR ASP THR ALA GLU ASN SEQRES 36 A 702 ILE ASN VAL SER TYR PRO GLU TRP LEU SER PRO GLU GLU SEQRES 37 A 702 ASP LEU ASN PHE VAL THR ASP THR ALA LYS ALA LEU ALA SEQRES 38 A 702 ASP VAL ALA THR VAL LEU GLY ARG ALA LEU TYR GLU LEU SEQRES 39 A 702 ALA GLY GLY THR ASN PHE SER ASP THR VAL GLN ALA ASP SEQRES 40 A 702 PRO GLN THR VAL THR ARG LEU LEU TYR GLY PHE LEU ILE SEQRES 41 A 702 LYS ALA ASN ASN SER TRP PHE GLN SER ILE LEU ARG GLN SEQRES 42 A 702 ASP LEU ARG SER TYR LEU GLY ASP GLY PRO LEU GLN HIS SEQRES 43 A 702 TYR ILE ALA VAL SER SER PRO THR ASN THR THR TYR VAL SEQRES 44 A 702 VAL GLN TYR ALA LEU ALA ASN LEU THR GLY THR VAL VAL SEQRES 45 A 702 ASN LEU THR ARG GLU GLN CYS GLN ASP PRO SER LYS VAL SEQRES 46 A 702 PRO SER GLU ASN LYS ASP LEU TYR GLU TYR SER TRP VAL SEQRES 47 A 702 GLN GLY PRO LEU HIS SER ASN GLU THR ASP ARG LEU PRO SEQRES 48 A 702 ARG CYS VAL ARG SER THR ALA ARG LEU ALA ARG ALA LEU SEQRES 49 A 702 SER PRO ALA PHE GLU LEU SER GLN TRP SER SER THR GLU SEQRES 50 A 702 TYR SER THR TRP THR GLU SER ARG TRP LYS ASP ILE ARG SEQRES 51 A 702 ALA ARG ILE PHE LEU ILE ALA SER LYS GLU LEU GLU LEU SEQRES 52 A 702 ILE THR LEU THR VAL GLY PHE GLY ILE LEU ILE PHE SER SEQRES 53 A 702 LEU ILE VAL THR TYR CYS ILE ASN ALA LYS ALA ASP VAL SEQRES 54 A 702 LEU PHE ILE ALA PRO ARG GLU PRO GLY ALA VAL SER TYR HELIX 1 1 LYS A 78 THR A 87 1 10 HELIX 2 2 LYS A 101 PHE A 103 5 3 HELIX 3 3 THR A 104 LYS A 110 1 7 HELIX 4 4 GLY A 170 GLU A 174 5 5 HELIX 5 5 GLU A 184 ASN A 197 1 14 HELIX 6 6 ALA A 228 MET A 231 5 4 HELIX 7 7 ARG A 232 ILE A 242 1 11 HELIX 8 8 ALA A 298 LYS A 314 1 17 HELIX 9 9 GLY A 339 GLY A 350 1 12 HELIX 10 10 LEU A 413 GLN A 420 1 8 HELIX 11 11 ALA A 484 GLU A 500 1 17 HELIX 12 12 ASP A 514 THR A 519 1 6 HELIX 13 13 LEU A 521 LYS A 528 1 8 HELIX 14 14 GLN A 568 LEU A 581 1 14 SHEET 1 AA 6 PRO A 43 LEU A 44 0 SHEET 2 AA 6 ARG A 657 ARG A 659 -1 O ALA A 658 N LEU A 44 SHEET 3 AA 6 ALA A 214 PHE A 218 -1 O GLN A 216 N ARG A 659 SHEET 4 AA 6 ASP A 69 VAL A 76 -1 O ASP A 69 N LEU A 217 SHEET 5 AA 6 TYR A 94 GLU A 99 1 O MET A 95 N HIS A 74 SHEET 6 AA 6 VAL A 123 LEU A 125 1 O VAL A 123 N LEU A 98 SHEET 1 AB 2 THR A 47 ALA A 48 0 SHEET 2 AB 2 LEU A 182 LEU A 183 -1 O LEU A 182 N ALA A 48 SHEET 1 AC 2 ASP A 249 PRO A 250 0 SHEET 2 AC 2 THR A 649 GLU A 650 -1 O GLU A 650 N ASP A 249 SHEET 1 AD 2 TYR A 254 VAL A 256 0 SHEET 2 AD 2 VAL A 621 SER A 623 -1 O ARG A 622 N ASN A 255 SHEET 1 AE 7 SER A 258 MET A 259 0 SHEET 2 AE 7 VAL A 325 VAL A 328 -1 O PHE A 327 N SER A 258 SHEET 3 AE 7 VAL A 276 THR A 280 1 O VAL A 276 N MET A 326 SHEET 4 AE 7 VAL A 383 ASN A 387 1 O SER A 384 N ALA A 279 SHEET 5 AE 7 TYR A 457 GLU A 461 1 O ASP A 458 N GLN A 385 SHEET 6 AE 7 LYS A 403 VAL A 408 -1 O SER A 404 N GLU A 461 SHEET 7 AE 7 ALA A 433 ASN A 435 1 O ARG A 434 N GLY A 405 SSBOND 1 CYS A 50 CYS A 62 1555 1555 2.07 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000