HEADER HYDROLASE 17-JUN-14 4UPI TITLE DIMERIC SULFATASE SPAS1 FROM SILICIBACTER POMEROYI COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFATASE FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SULFATASE; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FORMYL GLYCINE IN POSITION 77, MODIFIED FROM CYSTEINE, COMPND 7 WITH PARTIAL MODIFICATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUEGERIA POMEROYI; SOURCE 3 ORGANISM_TAXID: 246200; SOURCE 4 STRAIN: DSS-3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PASK-IBA5PLUS; SOURCE 10 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES SOURCE 11 (DSMZ) KEYWDS HYDROLASE, SUPERFAMILY, ALKALINE PHOSPHATASE SUPERFAMILY EXPDTA X-RAY DIFFRACTION AUTHOR S.JONAS,B.VAN LOO,F.HOLLFELDER,M.HYVONEN REVDAT 6 10-JAN-24 4UPI 1 REMARK LINK REVDAT 5 08-MAY-19 4UPI 1 JRNL REVDAT 4 24-APR-19 4UPI 1 SEQRES LINK REVDAT 3 19-DEC-18 4UPI 1 JRNL REVDAT 2 16-NOV-16 4UPI 1 REMARK DBREF SEQADV MODRES REVDAT 2 2 1 HET HELIX SHEET LINK REVDAT 2 3 1 CISPEP SITE ATOM ANISOU REVDAT 2 4 1 HETATM TER CONECT MASTER REVDAT 1 01-JUL-15 4UPI 0 JRNL AUTH B.VAN LOO,C.D.BAYER,G.FISCHER,S.JONAS,E.VALKOV,M.F.MOHAMED, JRNL AUTH 2 A.VOROBIEVA,C.DUTRUEL,M.HYVONEN,F.HOLLFELDER JRNL TITL BALANCING SPECIFICITY AND PROMISCUITY IN ENZYME EVOLUTION: JRNL TITL 2 MULTIDIMENSIONAL ACTIVITY TRANSITIONS IN THE ALKALINE JRNL TITL 3 PHOSPHATASE SUPERFAMILY. JRNL REF J.AM.CHEM.SOC. V. 141 370 2019 JRNL REFN ESSN 1520-5126 JRNL PMID 30497259 JRNL DOI 10.1021/JACS.8B10290 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 160242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5136 - 3.8827 0.99 5259 254 0.1357 0.1507 REMARK 3 2 3.8827 - 3.0822 1.00 5218 255 0.1365 0.1467 REMARK 3 3 3.0822 - 2.6928 1.00 5165 295 0.1480 0.1606 REMARK 3 4 2.6928 - 2.4466 1.00 5135 266 0.1464 0.1815 REMARK 3 5 2.4466 - 2.2713 1.00 5166 263 0.1433 0.1484 REMARK 3 6 2.2713 - 2.1374 0.98 5077 260 0.1406 0.1741 REMARK 3 7 2.1374 - 2.0303 0.99 5113 257 0.1338 0.1472 REMARK 3 8 2.0303 - 1.9420 0.99 5111 300 0.1337 0.1608 REMARK 3 9 1.9420 - 1.8672 0.97 4998 261 0.1386 0.1635 REMARK 3 10 1.8672 - 1.8028 0.99 5090 270 0.1371 0.1834 REMARK 3 11 1.8028 - 1.7464 0.99 5153 254 0.1305 0.1466 REMARK 3 12 1.7464 - 1.6965 0.99 5125 240 0.1210 0.1479 REMARK 3 13 1.6965 - 1.6518 0.99 5053 288 0.1193 0.1334 REMARK 3 14 1.6518 - 1.6115 0.99 5079 285 0.1196 0.1768 REMARK 3 15 1.6115 - 1.5749 0.99 5078 290 0.1234 0.1471 REMARK 3 16 1.5749 - 1.5414 0.99 5118 274 0.1249 0.1491 REMARK 3 17 1.5414 - 1.5105 0.99 5104 258 0.1286 0.1689 REMARK 3 18 1.5105 - 1.4820 1.00 5155 268 0.1372 0.1732 REMARK 3 19 1.4820 - 1.4556 0.99 5028 277 0.1463 0.1963 REMARK 3 20 1.4556 - 1.4309 0.99 5151 253 0.1528 0.1765 REMARK 3 21 1.4309 - 1.4078 1.00 5079 261 0.1598 0.1960 REMARK 3 22 1.4078 - 1.3861 1.00 5173 254 0.1607 0.2181 REMARK 3 23 1.3861 - 1.3658 0.99 5140 281 0.1681 0.1933 REMARK 3 24 1.3658 - 1.3465 1.00 5067 269 0.1697 0.2210 REMARK 3 25 1.3465 - 1.3283 1.00 5086 298 0.1735 0.2066 REMARK 3 26 1.3283 - 1.3111 1.00 5112 292 0.1848 0.2285 REMARK 3 27 1.3111 - 1.2947 0.99 5032 267 0.2492 0.2986 REMARK 3 28 1.2947 - 1.2791 0.98 5052 249 0.2555 0.2589 REMARK 3 29 1.2791 - 1.2642 0.92 4665 269 0.2357 0.2504 REMARK 3 30 1.2642 - 1.2500 0.85 4412 240 0.2557 0.2823 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4576 REMARK 3 ANGLE : 1.123 6211 REMARK 3 CHIRALITY : 0.078 637 REMARK 3 PLANARITY : 0.006 834 REMARK 3 DIHEDRAL : 13.508 1729 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1290060787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 160317 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 74.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.87 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1E2S, 2VQR, 1FSU, 1P49, 1HTH AS AN REMARK 200 ENSEMBLE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.0, 20% (W/V) PEG REMARK 280 6000, 0.75 M LICL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.51350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.01450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.51350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.01450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2145 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2369 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2373 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2374 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 ALA A -22 REMARK 465 SER A -21 REMARK 465 TRP A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 PRO A -17 REMARK 465 GLN A -16 REMARK 465 PHE A -15 REMARK 465 GLU A -14 REMARK 465 LYS A -13 REMARK 465 GLY A -12 REMARK 465 ALA A -11 REMARK 465 GLU A -10 REMARK 465 THR A -9 REMARK 465 ALA A -8 REMARK 465 VAL A -7 REMARK 465 PRO A -6 REMARK 465 ASN A -5 REMARK 465 SER A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 VAL A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 552 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2766 O HOH A 2767 1.82 REMARK 500 O HOH A 2275 O HOH A 2584 1.85 REMARK 500 O HOH A 2534 O HOH A 2535 1.93 REMARK 500 O HOH A 2350 O HOH A 2721 1.95 REMARK 500 O HOH A 2243 O HOH A 2542 1.96 REMARK 500 O HOH A 2554 O HOH A 2556 1.96 REMARK 500 O HOH A 2042 O HOH A 2694 1.97 REMARK 500 OE2 GLU A 149 O HOH A 2291 2.00 REMARK 500 O HOH A 2120 O HOH A 2694 2.02 REMARK 500 O HOH A 2622 O HOH A 2624 2.02 REMARK 500 O HOH A 2189 O HOH A 2463 2.03 REMARK 500 O HOH A 2275 O HOH A 2583 2.03 REMARK 500 OE1 GLN A 313 O HOH A 2503 2.03 REMARK 500 O HOH A 2567 O HOH A 2568 2.04 REMARK 500 O HOH A 2276 O HOH A 2696 2.05 REMARK 500 O HOH A 2236 O HOH A 2525 2.07 REMARK 500 NH1 ARG A 39 O HOH A 2059 2.08 REMARK 500 O HOH A 2679 O HOH A 2680 2.10 REMARK 500 O HOH A 2035 O HOH A 2039 2.10 REMARK 500 O HOH A 2253 O HOH A 2272 2.11 REMARK 500 N ARG A 146 O HOH A 2284 2.13 REMARK 500 O HOH A 2627 O HOH A 2665 2.13 REMARK 500 O HOH A 2059 O HOH A 2060 2.13 REMARK 500 O HOH A 2087 O HOH A 2235 2.14 REMARK 500 OE1 GLU A 260 O HOH A 2445 2.15 REMARK 500 O HOH A 2305 O HOH A 2631 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2055 O HOH A 2222 2555 2.01 REMARK 500 O GLY A 178 O HOH A 2626 3555 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 30 70.94 -119.39 REMARK 500 THR A 30 70.94 -118.89 REMARK 500 CYS A 53 -71.17 -33.08 REMARK 500 HIS A 329 173.02 169.60 REMARK 500 GLU A 340 -138.54 60.07 REMARK 500 LYS A 341 23.38 -158.33 REMARK 500 LEU A 343 -174.52 70.57 REMARK 500 ASP A 409 73.77 -152.54 REMARK 500 CYS A 439 68.09 -101.29 REMARK 500 ARG A 448 -55.14 -126.63 REMARK 500 SER A 519 -145.39 -141.18 REMARK 500 ASN A 551 -168.87 -107.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2253 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A2297 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A2306 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A2364 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A2767 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A2768 DISTANCE = 7.80 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1576 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD1 REMARK 620 2 ASP A 328 OD2 108.9 REMARK 620 3 HIS A 329 NE2 109.7 99.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1576 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UPK RELATED DB: PDB REMARK 900 PHOSPHONATE MONOESTER HYDROLASE SPPMH FROM SILICIBACTER POMEROYI REMARK 900 RELATED ID: 4UPL RELATED DB: PDB REMARK 900 DIMERIC SULFATASE SPAS2 FROM SILICIBACTER POMEROYI REMARK 900 RELATED ID: 4UQO RELATED DB: PDB REMARK 900 RADA C-TERMINAL ATPASE DOMAIN FROM PYROCOCCUS FURIOSUS BOUND TO ADP DBREF 4UPI A 1 552 UNP Q5LLA5 Q5LLA5_RUEPO 1 552 SEQADV 4UPI MET A -23 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI ALA A -22 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI SER A -21 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI TRP A -20 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI SER A -19 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI HIS A -18 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI PRO A -17 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI GLN A -16 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI PHE A -15 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI GLU A -14 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI LYS A -13 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI GLY A -12 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI ALA A -11 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI GLU A -10 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI THR A -9 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI ALA A -8 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI VAL A -7 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI PRO A -6 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI ASN A -5 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI SER A -4 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI SER A -3 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI SER A -2 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI VAL A -1 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI PRO A 0 UNP Q5LLA5 EXPRESSION TAG SEQADV 4UPI DDZ A 53 UNP Q5LLA5 CYS 53 MICROHETEROGENEITY SEQRES 1 A 576 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 576 GLU THR ALA VAL PRO ASN SER SER SER VAL PRO MET THR SEQRES 3 A 576 GLN ASN ARG ASN ILE LEU TRP ILE MET CYS ASP GLN LEU SEQRES 4 A 576 ARG PHE ASP TYR LEU SER CYS TYR GLY HIS GLU ARG LEU SEQRES 5 A 576 ASN THR PRO ASN ILE ASP LYS LEU ALA LYS ARG GLY VAL SEQRES 6 A 576 ARG PHE THR ASN ALA TYR VAL GLN ALA THR VAL DDZ GLY SEQRES 7 A 576 PRO SER ARG MET SER ALA TYR THR GLY ARG TYR VAL ARG SEQRES 8 A 576 SER HIS GLY SER THR GLN ASN GLY ILE PRO LEU ARG VAL SEQRES 9 A 576 GLY GLU PRO THR LEU GLY ASP HIS LEU ARG ASP VAL GLY SEQRES 10 A 576 MET ARG ASN VAL LEU ILE GLY LYS THR HIS MET ARG PRO SEQRES 11 A 576 ASP LEU ASP GLY MET LYS ARG LEU GLY ILE ASP PRO ASP SEQRES 12 A 576 SER GLU ILE GLY ALA ARG VAL GLY GLU GLY GLY PHE ASP SEQRES 13 A 576 ALA PHE ASP ARG ASP ASP GLY VAL HIS PRO THR GLY TYR SEQRES 14 A 576 ARG LYS LYS GLU PRO ALA TYR ASN ASP TYR LEU ARG HIS SEQRES 15 A 576 ALA GLY PHE GLN ALA GLU ASN PRO TRP GLU PHE TRP ALA SEQRES 16 A 576 ASN SER ALA GLU GLY LYS GLY GLY GLU ASN GLN SER GLY SEQRES 17 A 576 TRP LEU LEU THR HIS ALA ASP LYS PRO ALA ARG VAL PRO SEQRES 18 A 576 GLU GLU HIS SER GLU THR ALA TYR MET THR ARG ARG ALA SEQRES 19 A 576 MET GLU PHE MET GLU ALA ALA GLU LYS ASP GLY ARG PRO SEQRES 20 A 576 TRP CYS ALA HIS LEU SER TYR ILE LYS PRO HIS TRP PRO SEQRES 21 A 576 TYR ILE VAL PRO ALA PRO TYR HIS ASP MET PHE GLY PRO SEQRES 22 A 576 ASP ASP VAL LYS PRO ALA VAL ARG SER ASP GLU GLU LEU SEQRES 23 A 576 LYS ALA ALA HIS PRO LEU PHE LYS ALA MET THR GLU GLU SEQRES 24 A 576 VAL TYR SER ARG ASN PHE ALA ARG ASP GLU VAL ARG GLU SEQRES 25 A 576 LYS VAL ILE PRO ALA TYR MET GLY LEU ILE LYS GLN ILE SEQRES 26 A 576 ASP ASP GLN LEU GLY GLN LEU PHE ALA PHE MET GLN GLU SEQRES 27 A 576 ARG GLY LEU ASP GLU ASN THR MET ILE VAL PHE THR ALA SEQRES 28 A 576 ASP HIS GLY ASP TYR LEU GLY ASP HIS TRP MET GLY GLU SEQRES 29 A 576 LYS TYR LEU PHE TYR GLU ALA ALA ALA LYS VAL PRO LEU SEQRES 30 A 576 ILE ILE TYR ASP PRO SER ASP LYS ALA ASP ALA THR ARG SEQRES 31 A 576 GLY THR VAL SER ASP ALA LEU VAL GLU MET ILE ASP LEU SEQRES 32 A 576 ALA PRO THR PHE VAL ASP TYR ALA GLY GLY VAL PRO PRO SEQRES 33 A 576 MET HIS ILE LEU GLU GLY LYS SER LEU LEU PRO LEU LEU SEQRES 34 A 576 HIS ASP ASP ASP SER SER TRP ASP ARG GLN TYR VAL PHE SEQRES 35 A 576 SER GLU LEU ASP TYR SER ASN LEU PRO ALA ARG LEU LYS SEQRES 36 A 576 LEU GLY ARG ASP ILE GLN ASP CYS ARG ALA THR MET VAL SEQRES 37 A 576 PHE ASP GLY ARG TYR LYS LEU VAL GLU VAL MET GLY PHE SEQRES 38 A 576 ALA PRO ILE LEU PHE ASP LEU GLU VAL ASP PRO ASP GLU SEQRES 39 A 576 LEU LYS ASP LEU GLY ARG ASP PRO SER ALA GLU GLU VAL SEQRES 40 A 576 ARG GLN ARG LEU THR SER ALA LEU ASP ALA TRP HIS ARG SEQRES 41 A 576 ASN THR ARG GLN ARG ILE THR LYS SER ASP ALA ALA TYR SEQRES 42 A 576 ARG ALA LEU ASP PRO VAL LEU ARG GLU SER ASP PRO ASP SEQRES 43 A 576 LEU MET ALA GLY VAL ILE ILE GLY TYR TRP ASP GLU ASP SEQRES 44 A 576 GLU VAL GLU ALA GLU LYS ARG ARG ILE ALA ARG ILE LEU SEQRES 45 A 576 GLY GLU ASN SER MODRES 4UPI DDZ A 53 ALA 3,3-DIHYDROXY L-ALANINE HET DDZ A 53 7 HET ZN A1576 1 HETNAM DDZ 3,3-DIHYDROXY L-ALANINE HETNAM ZN ZINC ION HETSYN DDZ 3-HYDROXY-L-SERINE FORMUL 1 DDZ C3 H7 N O4 FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *768(H2 O) HELIX 1 1 ARG A 16 LEU A 20 5 5 HELIX 2 2 LEU A 20 GLY A 24 5 5 HELIX 3 3 THR A 30 ARG A 39 1 10 HELIX 4 4 DDZ A 53 GLY A 63 1 11 HELIX 5 5 TYR A 65 GLY A 70 1 6 HELIX 6 6 THR A 84 ASP A 91 1 8 HELIX 7 7 ASP A 107 LEU A 114 1 8 HELIX 8 8 SER A 120 GLU A 128 1 9 HELIX 9 9 PRO A 150 ALA A 159 1 10 HELIX 10 10 ASN A 165 TRP A 170 1 6 HELIX 11 11 LEU A 186 ALA A 190 5 5 HELIX 12 12 PRO A 197 HIS A 200 5 4 HELIX 13 13 SER A 201 LYS A 219 1 19 HELIX 14 14 PRO A 242 MET A 246 5 5 HELIX 15 15 GLY A 248 VAL A 252 5 5 HELIX 16 16 SER A 258 LYS A 263 1 6 HELIX 17 17 HIS A 266 GLU A 274 1 9 HELIX 18 18 GLU A 275 ALA A 282 1 8 HELIX 19 19 ARG A 283 ARG A 315 1 33 HELIX 20 20 GLY A 316 GLU A 319 5 4 HELIX 21 21 GLY A 334 MET A 338 5 5 HELIX 22 22 TYR A 345 LYS A 350 1 6 HELIX 23 23 SER A 359 ARG A 366 5 8 HELIX 24 24 ASP A 378 ALA A 387 1 10 HELIX 25 25 LEU A 401 ASP A 407 1 7 HELIX 26 26 PRO A 427 LEU A 432 1 6 HELIX 27 27 ASP A 435 ASP A 438 5 4 HELIX 28 28 ASP A 477 SER A 479 5 3 HELIX 29 29 ALA A 480 ASN A 497 1 18 HELIX 30 30 ASP A 506 ALA A 511 1 6 HELIX 31 31 LEU A 512 SER A 519 1 8 HELIX 32 32 ASP A 520 GLY A 526 5 7 HELIX 33 33 ASP A 533 ASN A 551 1 19 SHEET 1 AA 8 ASP A 132 ARG A 136 0 SHEET 2 AA 8 ARG A 95 GLY A 100 1 O ASN A 96 N ASP A 132 SHEET 3 AA 8 TRP A 224 PRO A 233 1 O CYS A 225 N VAL A 97 SHEET 4 AA 8 ASN A 6 ASP A 13 1 O ILE A 7 N ALA A 226 SHEET 5 AA 8 THR A 321 ALA A 327 1 O MET A 322 N LEU A 8 SHEET 6 AA 8 LEU A 353 TYR A 356 -1 O ILE A 354 N PHE A 325 SHEET 7 AA 8 VAL A 41 PHE A 43 -1 O VAL A 41 N ILE A 355 SHEET 8 AA 8 THR A 368 SER A 370 1 O THR A 368 N ARG A 42 SHEET 1 AB 2 ALA A 46 TYR A 47 0 SHEET 2 AB 2 VAL A 374 GLU A 375 1 O VAL A 374 N TYR A 47 SHEET 1 AC 2 SER A 173 GLU A 175 0 SHEET 2 AC 2 ASN A 181 SER A 183 -1 O GLN A 182 N ALA A 174 SHEET 1 AD 2 PRO A 193 ALA A 194 0 SHEET 2 AD 2 VAL A 239 PRO A 240 1 O VAL A 239 N ALA A 194 SHEET 1 AE 4 VAL A 417 ASP A 422 0 SHEET 2 AE 4 ARG A 440 PHE A 445 -1 O ALA A 441 N LEU A 421 SHEET 3 AE 4 TYR A 449 VAL A 454 -1 O LEU A 451 N VAL A 444 SHEET 4 AE 4 ILE A 460 ASP A 463 -1 O ILE A 460 N VAL A 452 LINK C VAL A 52 N ADDZ A 53 1555 1555 1.33 LINK C ADDZ A 53 N GLY A 54 1555 1555 1.33 LINK OD1 ASP A 13 ZN ZN A1576 1555 1555 2.02 LINK OD2 ASP A 328 ZN ZN A1576 1555 1555 1.99 LINK NE2 HIS A 329 ZN ZN A1576 1555 1555 2.04 CISPEP 1 THR A 143 GLY A 144 0 -3.58 CISPEP 2 LYS A 232 PRO A 233 0 6.87 CISPEP 3 TRP A 235 PRO A 236 0 -2.88 CISPEP 4 ALA A 241 PRO A 242 0 8.23 SITE 1 AC1 4 ASP A 13 DDZ A 53 ASP A 328 HIS A 329 CRYST1 93.027 86.029 82.874 90.00 115.19 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010750 0.000000 0.005056 0.00000 SCALE2 0.000000 0.011624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013335 0.00000