HEADER RIBOSOME 18-JUN-14 4UPZ OBSLTE 10-DEC-14 4UPZ 4UJC TITLE MAMMALIAN 80S HCV-IRES INITIATION COMPLEX WITH EIF5B POST-LIKE STATE SPLIT 4UPZ 4UQ0 4UQ1 4UQ4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: EIF5B; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: HCV-IRES; COMPND 9 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 7 ORGANISM_COMMON: RABBIT; SOURCE 8 ORGANISM_TAXID: 9986; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 11 ORGANISM_COMMON: HCV; SOURCE 12 ORGANISM_TAXID: 11103 KEYWDS RIBOSOME, TRANSLATION INITIATION, HEPATITIS C VIRUS INTERNAL KEYWDS 2 RIBOSOME ENTRY SITE, EUKARYOTIC INITIATION FACTOR 5B EXPDTA ELECTRON MICROSCOPY AUTHOR H.YAMAMOTO,A.UNBEHAUN,J.LOERKE,E.BEHRMANN,C.MARIANNE,J.BURGER, AUTHOR 2 T.MIELKE,C.M.T.SPAHN REVDAT 5 10-DEC-14 4UPZ 1 OBSLTE REVDAT 4 20-AUG-14 4UPZ 1 JRNL REVDAT 3 13-AUG-14 4UPZ 1 SPLIT REVDAT 2 06-AUG-14 4UPZ 1 JRNL REVDAT 1 30-JUL-14 4UPZ 0 JRNL AUTH H.YAMAMOTO,A.UNBEHAUN,J.LOERKE,E.BEHRMANN,M.COLLIER, JRNL AUTH 2 J.BURGER,T.MIELKE,C.M.T.SPAHN JRNL TITL STRUCTURE OF THE MAMMALIAN 80S INITIATION COMPLEX WITH JRNL TITL 2 INITIATION FACTOR 5B ON HCV-IRES RNA. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 721 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 25064512 JRNL DOI 10.1038/NSMB.2859 REMARK 2 REMARK 2 RESOLUTION. 9.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SPIDER, SPARX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 4CXC REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : RIGID BODY REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.37 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : 2.37 REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 9.5 REMARK 3 NUMBER OF PARTICLES : 541570 REMARK 3 CTF CORRECTION METHOD : CTFFIND3 REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 3 REMARK 3 SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2683. REMARK 3 (DEPOSITION ID: 12564). REMARK 4 REMARK 4 4UPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 THIS ENTRY WITH OTHER SPLIT ENTRIES HAVE BEEN CONSOLIDATED INTO A REMARK 5 COMBINED FILE FOR COMPLETE REPRESENTATION. NO COORDINATES HAVE BEEN REMARK 5 CHANGED. REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUN-14. REMARK 100 THE PDBE ID CODE IS EBI-60985. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : NULL REMARK 245 NAME OF SAMPLE : HCV-IRES 80S INITIATION REMARK 245 COMPLEX WITH EIF5B POST- REMARK 245 LIKE STATE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.15 REMARK 245 SAMPLE SUPPORT DETAILS : HOLEY CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : VITRIFICATION 1 -- REMARK 245 CRYOGEN- ETHANE, HUMIDITY- REMARK 245 100, TEMPERATURE- 93, REMARK 245 INSTRUMENT- FEI VITROBOT REMARK 245 MARK I, METHOD- BLOT FOR REMARK 245 2-4 SECONDS BEFORE REMARK 245 PLUNGING, REMARK 245 SAMPLE BUFFER : 20MM TRIS-HCL, 5MM MGCL2, REMARK 245 100MM KCL, 0.2MM REMARK 245 SPERMIDINE, 2MM DTT REMARK 245 PH : 7.6 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 22-DEC-12 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 245 DETECTOR TYPE : TVIPS TEMCAM-F416 (4K REMARK 245 X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 2000 REMARK 245 MAXIMUM DEFOCUS (NM) : 4500 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.0 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 20 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 115000 REMARK 245 CALIBRATED MAGNIFICATION : 194805 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : AUTOMATED DATA REMARK 245 COLLECTION USING REMARK 245 LEGINON REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 873 REMARK 465 GLU B 874 REMARK 465 ALA B 875 REMARK 465 GLY B 876 REMARK 465 GLY B 877 REMARK 465 ILE B 878 REMARK 465 THR B 879 REMARK 465 MET B 1124 REMARK 465 LYS B 1125 REMARK 465 GLU B 1126 REMARK 465 LEU B 1127 REMARK 465 ARG B 1128 REMARK 465 VAL B 1129 REMARK 465 LYS B 1130 REMARK 465 ASN B 1131 REMARK 465 ILE B 1434 REMARK 465 G C 1 REMARK 465 C C 2 REMARK 465 C C 3 REMARK 465 A C 4 REMARK 465 G C 5 REMARK 465 C C 6 REMARK 465 C C 7 REMARK 465 C C 8 REMARK 465 C C 9 REMARK 465 C C 10 REMARK 465 U C 11 REMARK 465 G C 12 REMARK 465 A C 13 REMARK 465 U C 14 REMARK 465 G C 15 REMARK 465 G C 16 REMARK 465 G C 17 REMARK 465 G C 18 REMARK 465 G C 19 REMARK 465 C C 20 REMARK 465 G C 21 REMARK 465 A C 22 REMARK 465 C C 23 REMARK 465 A C 24 REMARK 465 C C 25 REMARK 465 U C 26 REMARK 465 C C 27 REMARK 465 C C 28 REMARK 465 A C 29 REMARK 465 C C 30 REMARK 465 C C 31 REMARK 465 A C 32 REMARK 465 U C 33 REMARK 465 G C 34 REMARK 465 A C 35 REMARK 465 A C 36 REMARK 465 U C 37 REMARK 465 C C 38 REMARK 465 A C 39 REMARK 465 C C 40 REMARK 465 U C 41 REMARK 465 C C 42 REMARK 465 C C 43 REMARK 465 U C 175 REMARK 465 G C 176 REMARK 465 C C 177 REMARK 465 C C 178 REMARK 465 A C 179 REMARK 465 G C 180 REMARK 465 G C 181 REMARK 465 A C 182 REMARK 465 C C 183 REMARK 465 G C 184 REMARK 465 A C 185 REMARK 465 C C 186 REMARK 465 C C 187 REMARK 465 G C 188 REMARK 465 G C 189 REMARK 465 G C 190 REMARK 465 U C 191 REMARK 465 C C 192 REMARK 465 C C 193 REMARK 465 U C 194 REMARK 465 U C 195 REMARK 465 U C 196 REMARK 465 C C 197 REMARK 465 U C 198 REMARK 465 U C 199 REMARK 465 G C 200 REMARK 465 G C 201 REMARK 465 A C 202 REMARK 465 U C 203 REMARK 465 A C 204 REMARK 465 A C 205 REMARK 465 A C 206 REMARK 465 C C 207 REMARK 465 C C 208 REMARK 465 C C 209 REMARK 465 G C 210 REMARK 465 C C 211 REMARK 465 U C 212 REMARK 465 C C 213 REMARK 465 A C 214 REMARK 465 A C 215 REMARK 465 U C 216 REMARK 465 G C 217 REMARK 465 C C 218 REMARK 465 C C 219 REMARK 465 U C 220 REMARK 465 G C 221 REMARK 465 G C 222 REMARK 465 A C 223 REMARK 465 C C 354 REMARK 465 C C 355 REMARK 465 U C 356 REMARK 465 A C 357 REMARK 465 A C 358 REMARK 465 A C 359 REMARK 465 C C 360 REMARK 465 C C 361 REMARK 465 U C 362 REMARK 465 C C 363 REMARK 465 A C 364 REMARK 465 A C 365 REMARK 465 A C 366 REMARK 465 G C 367 REMARK 465 A C 368 REMARK 465 A C 369 REMARK 465 A C 370 REMARK 465 A C 371 REMARK 465 A C 372 REMARK 465 C C 373 REMARK 465 C C 374 REMARK 465 A C 375 REMARK 465 A C 376 REMARK 465 A C 377 REMARK 465 C C 378 REMARK 465 G C 379 REMARK 465 U C 380 REMARK 465 A C 381 REMARK 465 A C 382 REMARK 465 C C 383 REMARK 465 A C 384 REMARK 465 C C 385 REMARK 465 C C 386 REMARK 465 A C 387 REMARK 465 A C 388 REMARK 465 C C 389 REMARK 465 C C 390 REMARK 465 G C 391 REMARK 465 U C 392 REMARK 465 C C 393 REMARK 465 G C 394 REMARK 465 C C 395 REMARK 465 C C 396 REMARK 465 C C 397 REMARK 465 A C 398 REMARK 465 C C 399 REMARK 465 A C 400 REMARK 465 G C 401 REMARK 465 G C 402 REMARK 465 A C 403 REMARK 465 C C 404 REMARK 465 G C 405 REMARK 465 U C 406 REMARK 465 C C 407 REMARK 465 A C 408 REMARK 465 A C 409 REMARK 465 G C 410 REMARK 465 U C 411 REMARK 465 U C 412 REMARK 465 C C 413 REMARK 465 C C 414 REMARK 465 C C 415 REMARK 465 G C 416 REMARK 465 G C 417 REMARK 465 G C 418 REMARK 465 U C 419 REMARK 465 G C 420 REMARK 465 G C 421 REMARK 465 C C 422 REMARK 465 G C 423 REMARK 465 G C 424 REMARK 465 U C 425 REMARK 465 C C 426 REMARK 465 U C 427 REMARK 465 A C 428 REMARK 465 G C 429 REMARK 465 A C 430 REMARK 465 C C 431 REMARK 465 G C 432 REMARK 465 C C 433 REMARK 465 C C 434 REMARK 465 G C 435 REMARK 465 A C 436 REMARK 465 G C 437 REMARK 465 A C 438 REMARK 465 U C 439 REMARK 465 C C 440 REMARK 465 A C 441 REMARK 465 G C 442 REMARK 465 A C 443 REMARK 465 A C 444 REMARK 465 A C 445 REMARK 465 U C 446 REMARK 465 C C 447 REMARK 465 C C 448 REMARK 465 C C 449 REMARK 465 U C 450 REMARK 465 C C 451 REMARK 465 U C 452 REMARK 465 C C 453 REMARK 465 U C 454 REMARK 465 C C 455 REMARK 465 G C 456 REMARK 465 G C 457 REMARK 465 A C 458 REMARK 465 U C 459 REMARK 465 C C 460 REMARK 465 G C 461 REMARK 465 C C 462 REMARK 465 A C 463 REMARK 465 U C 464 REMARK 465 U C 465 REMARK 465 U C 466 REMARK 465 G C 467 REMARK 465 G C 468 REMARK 465 A C 469 REMARK 465 C C 470 REMARK 465 U C 471 REMARK 465 U C 472 REMARK 465 C C 473 REMARK 465 U C 474 REMARK 465 G C 475 REMARK 465 C C 476 REMARK 465 C C 477 REMARK 465 U C 478 REMARK 465 U C 479 REMARK 465 C C 480 REMARK 465 G C 481 REMARK 465 G C 482 REMARK 465 G C 483 REMARK 465 C C 484 REMARK 465 A C 485 REMARK 465 C C 486 REMARK 465 C C 487 REMARK 465 A C 488 REMARK 465 C C 489 REMARK 465 G C 490 REMARK 465 G C 491 REMARK 465 U C 492 REMARK 465 C C 493 REMARK 465 G C 494 REMARK 465 G C 495 REMARK 465 A C 496 REMARK 465 U C 497 REMARK 465 C C 498 REMARK 465 C C 499 REMARK 465 G C 500 REMARK 465 A C 501 REMARK 465 A C 502 REMARK 465 U C 503 REMARK 465 U C 504 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 U A 8 O2 C A 48 1.77 REMARK 500 O4 U A 8 N7 A A 14 2.00 REMARK 500 N6 A A 35 N2 G C 344 2.01 REMARK 500 O5' C A 68 NH1 ARG B 1388 2.08 REMARK 500 C5' C A 68 NH1 ARG B 1388 1.10 REMARK 500 C4' C A 68 NH1 ARG B 1388 1.98 REMARK 500 N7 G A 71 NH2 ARG B 1319 1.95 REMARK 500 O3' A A 73 ND2 ASN B 1317 1.51 REMARK 500 P C A 74 ND2 ASN B 1317 1.94 REMARK 500 OP2 C A 74 OD1 ASN B 1317 1.53 REMARK 500 OP2 C A 74 CG ASN B 1317 1.75 REMARK 500 OP2 C A 74 ND2 ASN B 1317 1.74 REMARK 500 O3' C A 74 CG LYS B 1374 2.05 REMARK 500 C4 C A 74 CE2 PHE B 1316 1.05 REMARK 500 C4 C A 74 CZ PHE B 1316 1.79 REMARK 500 N4 C A 74 CE2 PHE B 1316 1.22 REMARK 500 N4 C A 74 CE1 PHE B 1316 1.90 REMARK 500 N4 C A 74 CZ PHE B 1316 0.52 REMARK 500 C5 C A 74 CD2 PHE B 1316 1.57 REMARK 500 C5 C A 74 CE2 PHE B 1316 1.28 REMARK 500 P C A 75 CB LYS B 1374 1.89 REMARK 500 P C A 75 CG LYS B 1374 2.20 REMARK 500 OP1 C A 75 C LYS B 1374 2.19 REMARK 500 OP1 C A 75 CA LYS B 1374 1.31 REMARK 500 OP1 C A 75 CB LYS B 1374 1.10 REMARK 500 OP1 C A 75 CG LYS B 1374 1.56 REMARK 500 OP2 C A 75 CB VAL B 1323 1.80 REMARK 500 C2' C A 75 OE1 GLU B 1356 1.77 REMARK 500 O2' C A 75 OE1 GLU B 1356 1.45 REMARK 500 N4 C A 75 CD1 PHE B 1316 1.77 REMARK 500 N4 C A 75 CE1 PHE B 1316 1.84 REMARK 500 C5 C A 75 CD2 PHE B 1316 1.87 REMARK 500 P A A 76 CA VAL B 1373 2.13 REMARK 500 P A A 76 N LYS B 1374 2.17 REMARK 500 OP1 A A 76 C CYS B 1372 2.04 REMARK 500 OP1 A A 76 O CYS B 1372 1.80 REMARK 500 OP1 A A 76 N VAL B 1373 1.91 REMARK 500 OP1 A A 76 O SER B 1354 2.09 REMARK 500 OP1 A A 76 CA VAL B 1373 1.47 REMARK 500 OP2 A A 76 C VAL B 1373 1.99 REMARK 500 OP2 A A 76 CA LYS B 1374 2.12 REMARK 500 OP2 A A 76 N LYS B 1374 0.98 REMARK 500 O5' A A 76 SG CYS B 1372 2.12 REMARK 500 C5' A A 76 CA CYS B 1372 2.08 REMARK 500 C5' A A 76 CB CYS B 1372 1.99 REMARK 500 C5' A A 76 SG CYS B 1372 1.55 REMARK 500 C5' A A 76 C CYS B 1372 1.84 REMARK 500 C5' A A 76 N VAL B 1373 1.81 REMARK 500 C4' A A 76 CA CYS B 1372 1.67 REMARK 500 C4' A A 76 CB CYS B 1372 0.96 REMARK 500 REMARK 500 THIS ENTRY HAS 366 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 C C 240 O3' G C 241 P -0.080 REMARK 500 C C 334 O5' C C 334 C5' 0.099 REMARK 500 C C 338 N3 C C 338 C4 -0.048 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 6 C4' - C3' - O3' ANGL. DEV. = 21.7 DEGREES REMARK 500 A A 7 P - O5' - C5' ANGL. DEV. = 9.8 DEGREES REMARK 500 U A 8 C5' - C4' - C3' ANGL. DEV. = 21.6 DEGREES REMARK 500 A A 9 P - O5' - C5' ANGL. DEV. = 10.5 DEGREES REMARK 500 A A 9 C3' - O3' - P ANGL. DEV. = 10.6 DEGREES REMARK 500 G A 69 C2' - C3' - O3' ANGL. DEV. = 12.4 DEGREES REMARK 500 G A 69 C4' - C3' - O3' ANGL. DEV. = -17.0 DEGREES REMARK 500 G A 70 O5' - C5' - C4' ANGL. DEV. = -7.5 DEGREES REMARK 500 C A 72 C4' - C3' - O3' ANGL. DEV. = 15.8 DEGREES REMARK 500 C A 74 C4' - C3' - O3' ANGL. DEV. = 17.7 DEGREES REMARK 500 C C 45 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 U C 46 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 U C 48 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 G C 49 N1 - C6 - O6 ANGL. DEV. = -4.0 DEGREES REMARK 500 A C 50 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 A C 50 N1 - C6 - N6 ANGL. DEV. = -5.8 DEGREES REMARK 500 G C 51 N1 - C6 - O6 ANGL. DEV. = -5.2 DEGREES REMARK 500 G C 52 N1 - C6 - O6 ANGL. DEV. = -3.7 DEGREES REMARK 500 A C 53 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 A C 53 N1 - C6 - N6 ANGL. DEV. = -4.7 DEGREES REMARK 500 A C 53 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 A C 54 C4 - C5 - C6 ANGL. DEV. = -3.8 DEGREES REMARK 500 A C 54 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 A C 54 N1 - C6 - N6 ANGL. DEV. = -5.7 DEGREES REMARK 500 C C 55 C6 - N1 - C2 ANGL. DEV. = -2.5 DEGREES REMARK 500 U C 56 N3 - C2 - O2 ANGL. DEV. = -4.6 DEGREES REMARK 500 A C 57 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 A C 57 N1 - C6 - N6 ANGL. DEV. = -6.1 DEGREES REMARK 500 A C 57 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 C C 58 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 C C 58 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 U C 59 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 G C 60 N1 - C6 - O6 ANGL. DEV. = -3.6 DEGREES REMARK 500 C C 62 C4' - C3' - O3' ANGL. DEV. = -15.2 DEGREES REMARK 500 U C 63 C4' - C3' - O3' ANGL. DEV. = 20.3 DEGREES REMARK 500 U C 63 O5' - C5' - C4' ANGL. DEV. = -6.9 DEGREES REMARK 500 C C 69 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 A C 70 C4 - C5 - C6 ANGL. DEV. = -3.1 DEGREES REMARK 500 A C 70 C5 - C6 - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 A C 70 N1 - C6 - N6 ANGL. DEV. = -4.4 DEGREES REMARK 500 A C 72 N1 - C6 - N6 ANGL. DEV. = -5.4 DEGREES REMARK 500 A C 73 C4 - C5 - C6 ANGL. DEV. = -3.8 DEGREES REMARK 500 A C 73 C5 - C6 - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 A C 73 C6 - C5 - N7 ANGL. DEV. = 4.3 DEGREES REMARK 500 A C 73 N1 - C6 - N6 ANGL. DEV. = -6.2 DEGREES REMARK 500 A C 74 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 A C 74 N1 - C6 - N6 ANGL. DEV. = -4.7 DEGREES REMARK 500 A C 74 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G C 75 N1 - C6 - O6 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 375 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 835 89.53 -24.23 REMARK 500 LYS B 836 -63.55 -98.86 REMARK 500 VAL B 838 77.66 -16.01 REMARK 500 THR B 840 38.52 -163.27 REMARK 500 GLU B 841 -44.03 52.02 REMARK 500 LEU B 843 87.44 -45.13 REMARK 500 ARG B 844 -86.86 -114.13 REMARK 500 ALA B 845 118.85 169.32 REMARK 500 PRO B 846 173.19 -54.27 REMARK 500 GLN B 871 31.26 -75.76 REMARK 500 LYS B 897 -140.72 -62.10 REMARK 500 SER B 931 -135.66 136.13 REMARK 500 LYS B 971 42.40 70.20 REMARK 500 ASP B 977 -4.20 90.22 REMARK 500 ASP B 983 17.54 52.06 REMARK 500 SER B1061 -91.73 -131.88 REMARK 500 GLU B1068 19.39 28.83 REMARK 500 LEU B1070 -15.39 40.87 REMARK 500 ALA B1072 -40.18 -156.17 REMARK 500 GLN B1073 93.45 62.91 REMARK 500 MET B1075 -70.26 -82.89 REMARK 500 ALA B1141 121.98 -26.39 REMARK 500 ALA B1142 48.71 105.51 REMARK 500 GLU B1153 -30.66 146.46 REMARK 500 LEU B1173 -85.31 -130.43 REMARK 500 LYS B1182 -19.70 -45.09 REMARK 500 THR B1184 88.12 67.12 REMARK 500 LEU B1185 112.15 168.65 REMARK 500 ASN B1186 -152.44 -151.36 REMARK 500 ALA B1187 137.09 171.24 REMARK 500 LYS B1189 158.38 -45.13 REMARK 500 LEU B1190 78.62 168.43 REMARK 500 GLU B1191 -147.48 -95.97 REMARK 500 GLU B1192 -161.30 77.08 REMARK 500 LYS B1193 -112.95 57.53 REMARK 500 VAL B1195 120.46 104.72 REMARK 500 HIS B1241 91.13 67.22 REMARK 500 ASP B1242 98.05 64.28 REMARK 500 PRO B1243 -8.51 -59.44 REMARK 500 ALA B1246 50.61 -69.36 REMARK 500 LEU B1266 -166.33 -55.47 REMARK 500 ALA B1273 170.41 177.47 REMARK 500 ALA B1302 -108.92 -158.13 REMARK 500 VAL B1303 109.86 170.46 REMARK 500 PHE B1304 156.92 -12.93 REMARK 500 CYS B1306 147.41 -170.55 REMARK 500 TYR B1314 58.59 -118.45 REMARK 500 ARG B1319 -158.27 -159.80 REMARK 500 ASP B1320 -104.90 61.69 REMARK 500 ASP B1348 -12.82 59.24 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 834 SER B 835 137.75 REMARK 500 LYS B 836 ASN B 837 138.05 REMARK 500 TYR B 1133 GLU B 1134 -115.49 REMARK 500 ASP B 1348 ILE B 1349 85.16 REMARK 500 MET B 1385 PHE B 1386 -59.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 U C 46 0.11 SIDE CHAIN REMARK 500 G C 47 0.09 SIDE CHAIN REMARK 500 U C 48 0.07 SIDE CHAIN REMARK 500 G C 49 0.07 SIDE CHAIN REMARK 500 A C 50 0.09 SIDE CHAIN REMARK 500 G C 51 0.07 SIDE CHAIN REMARK 500 G C 52 0.07 SIDE CHAIN REMARK 500 A C 54 0.08 SIDE CHAIN REMARK 500 C C 55 0.10 SIDE CHAIN REMARK 500 A C 57 0.06 SIDE CHAIN REMARK 500 C C 58 0.07 SIDE CHAIN REMARK 500 G C 60 0.09 SIDE CHAIN REMARK 500 C C 69 0.11 SIDE CHAIN REMARK 500 A C 70 0.08 SIDE CHAIN REMARK 500 G C 71 0.09 SIDE CHAIN REMARK 500 A C 72 0.11 SIDE CHAIN REMARK 500 A C 73 0.06 SIDE CHAIN REMARK 500 A C 74 0.08 SIDE CHAIN REMARK 500 U C 78 0.07 SIDE CHAIN REMARK 500 C C 79 0.09 SIDE CHAIN REMARK 500 G C 82 0.13 SIDE CHAIN REMARK 500 C C 83 0.11 SIDE CHAIN REMARK 500 C C 84 0.09 SIDE CHAIN REMARK 500 U C 86 0.07 SIDE CHAIN REMARK 500 G C 87 0.08 SIDE CHAIN REMARK 500 G C 88 0.11 SIDE CHAIN REMARK 500 C C 89 0.12 SIDE CHAIN REMARK 500 G C 90 0.10 SIDE CHAIN REMARK 500 U C 91 0.08 SIDE CHAIN REMARK 500 A C 96 0.06 SIDE CHAIN REMARK 500 U C 97 0.08 SIDE CHAIN REMARK 500 G C 98 0.08 SIDE CHAIN REMARK 500 C C 108 0.08 SIDE CHAIN REMARK 500 A C 109 0.07 SIDE CHAIN REMARK 500 G C 110 0.07 SIDE CHAIN REMARK 500 C C 111 0.09 SIDE CHAIN REMARK 500 C C 112 0.07 SIDE CHAIN REMARK 500 U C 113 0.12 SIDE CHAIN REMARK 500 C C 114 0.10 SIDE CHAIN REMARK 500 C C 115 0.06 SIDE CHAIN REMARK 500 A C 116 0.11 SIDE CHAIN REMARK 500 G C 117 0.06 SIDE CHAIN REMARK 500 C C 121 0.09 SIDE CHAIN REMARK 500 C C 122 0.10 SIDE CHAIN REMARK 500 U C 127 0.06 SIDE CHAIN REMARK 500 C C 128 0.09 SIDE CHAIN REMARK 500 G C 132 0.07 SIDE CHAIN REMARK 500 A C 134 0.08 SIDE CHAIN REMARK 500 C C 139 0.09 SIDE CHAIN REMARK 500 G C 143 0.08 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 110 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN B 880 12.10 REMARK 500 ILE B 899 -12.76 REMARK 500 PRO B1105 11.78 REMARK 500 ASP B1348 -13.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE B1405 23.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2435 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 859 OG1 REMARK 620 2 GNP B2434 O2B 65.3 REMARK 620 3 GNP B2434 O1A 124.1 74.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B2434 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B2435 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UPW RELATED DB: PDB REMARK 900 MAMMALIAN 80S INITIATION COMPLEX WITH EIF5B PRE-LIKE REMARK 900 STATE REMARK 900 RELATED ID: 4UPX RELATED DB: PDB REMARK 900 MAMMALIAN 80S INITIATION COMPLEX WITH EIF5B PRE-LIKE REMARK 900 STATE REMARK 900 RELATED ID: 4UPY RELATED DB: PDB REMARK 900 MAMMALIAN 80S INITIATION COMPLEX WITH EIF5B PRE-LIKE REMARK 900 STATE REMARK 900 RELATED ID: 4UQ0 RELATED DB: PDB REMARK 900 MAMMALIAN 80S INITIATION COMPLEX WITH EIF5B POST-LIKE REMARK 900 STATE REMARK 900 RELATED ID: 4UQ1 RELATED DB: PDB REMARK 900 MAMMALIAN 80S INITIATION COMPLEX WITH EIF5B POST-LIKE REMARK 900 STATE REMARK 900 RELATED ID: EMD-2683 RELATED DB: EMDB DBREF 4UPZ A 1 76 PDB 4UPZ 4UPZ 1 76 DBREF 4UPZ B 808 1434 UNP G1TRL5 G1TRL5_RABIT 583 1209 DBREF 4UPZ C 1 504 PDB 4UPZ 4UPZ 1 504 SEQRES 1 A 76 G C C C G G A U A G C U C SEQRES 2 A 76 A G U C G G U A G A G C A SEQRES 3 A 76 G G G G A U U G A A A A U SEQRES 4 A 76 C C C C G U G U C C U U G SEQRES 5 A 76 G U U C G A U U C C G A G SEQRES 6 A 76 U C C G G G C A C C A SEQRES 1 B 627 ASP SER ASP ASP ASP ARG THR LYS GLU GLU ARG ALA TYR SEQRES 2 B 627 ASP LYS ALA LYS ARG ARG ILE GLU LYS ARG ARG LEU GLU SEQRES 3 B 627 HIS SER LYS ASN VAL ASN THR GLU LYS LEU ARG ALA PRO SEQRES 4 B 627 VAL ILE CYS VAL LEU GLY HIS VAL ASP THR GLY LYS THR SEQRES 5 B 627 LYS ILE LEU ASP LYS LEU ARG HIS THR HIS VAL GLN ASP SEQRES 6 B 627 GLY GLU ALA GLY GLY ILE THR GLN GLN ILE GLY ALA THR SEQRES 7 B 627 ASN VAL PRO LEU GLU ALA ILE ASN GLU GLN THR LYS MET SEQRES 8 B 627 ILE LYS ASN PHE ASP ARG GLU ASN VAL ARG ILE PRO GLY SEQRES 9 B 627 MET LEU ILE ILE ASP THR PRO GLY HIS GLU SER PHE SER SEQRES 10 B 627 ASN LEU ARG ASN ARG GLY SER SER LEU CYS ASP ILE ALA SEQRES 11 B 627 ILE LEU VAL VAL ASP ILE MET HIS GLY LEU GLU PRO GLN SEQRES 12 B 627 THR ILE GLU SER ILE ASN LEU LEU LYS SER LYS LYS CYS SEQRES 13 B 627 PRO PHE ILE VAL ALA LEU ASN LYS ILE ASP ARG LEU TYR SEQRES 14 B 627 ASP TRP LYS LYS SER PRO ASP SER ASP VAL ALA ALA THR SEQRES 15 B 627 LEU LYS LYS GLN LYS LYS ASN THR LYS ASP GLU PHE GLU SEQRES 16 B 627 GLU ARG ALA LYS ALA ILE ILE VAL GLU PHE ALA GLN GLN SEQRES 17 B 627 GLY LEU ASN ALA ALA LEU PHE TYR GLU ASN LYS ASP PRO SEQRES 18 B 627 ARG THR PHE VAL SER LEU VAL PRO THR SER ALA HIS THR SEQRES 19 B 627 GLY ASP GLY MET GLY SER LEU ILE TYR LEU LEU VAL GLU SEQRES 20 B 627 LEU THR GLN THR MET LEU SER LYS ARG LEU ALA HIS CYS SEQRES 21 B 627 GLU GLU LEU ARG ALA GLN VAL MET GLU VAL LYS ALA LEU SEQRES 22 B 627 PRO GLY MET GLY THR THR ILE ASP VAL ILE LEU ILE ASN SEQRES 23 B 627 GLY ARG LEU LYS GLU GLY ASP THR ILE ILE VAL PRO GLY SEQRES 24 B 627 VAL GLU GLY PRO ILE VAL THR GLN ILE ARG GLY LEU LEU SEQRES 25 B 627 LEU PRO PRO PRO MET LYS GLU LEU ARG VAL LYS ASN GLN SEQRES 26 B 627 TYR GLU LYS HIS LYS GLU VAL GLU ALA ALA GLN GLY VAL SEQRES 27 B 627 LYS ILE LEU GLY LYS ASP LEU GLU LYS THR LEU ALA GLY SEQRES 28 B 627 LEU PRO LEU LEU VAL ALA TYR LYS GLU ASP GLU ILE PRO SEQRES 29 B 627 VAL LEU LYS ASP GLU LEU ILE HIS GLU LEU LYS GLN THR SEQRES 30 B 627 LEU ASN ALA ILE LYS LEU GLU GLU LYS GLY VAL TYR VAL SEQRES 31 B 627 GLN ALA SER THR LEU GLY SER LEU GLU ALA LEU LEU GLU SEQRES 32 B 627 PHE LEU LYS THR SER GLU VAL PRO TYR ALA GLY ILE ASN SEQRES 33 B 627 ILE GLY PRO VAL HIS LYS LYS ASP VAL MET LYS ALA SER SEQRES 34 B 627 VAL MET LEU GLU HIS ASP PRO GLN TYR ALA VAL ILE LEU SEQRES 35 B 627 ALA PHE ASP VAL ARG ILE GLU ARG ASP ALA GLN GLU MET SEQRES 36 B 627 ALA ASP SER LEU GLY VAL ARG ILE PHE SER ALA GLU ILE SEQRES 37 B 627 ILE TYR HIS LEU PHE ASP ALA PHE THR LYS TYR ARG GLN SEQRES 38 B 627 ASP TYR LYS LYS GLN LYS GLN GLU GLU PHE LYS HIS ILE SEQRES 39 B 627 ALA VAL PHE PRO CYS LYS MET LYS ILE LEU PRO GLN TYR SEQRES 40 B 627 ILE PHE ASN SER ARG ASP PRO ILE VAL MET GLY VAL THR SEQRES 41 B 627 VAL GLU ALA GLY GLN VAL LYS GLN GLY THR PRO MET CYS SEQRES 42 B 627 VAL PRO SER LYS ASN PHE VAL ASP ILE GLY ILE VAL THR SEQRES 43 B 627 SER ILE GLU VAL ASN HIS LYS GLN VAL ASP VAL ALA LYS SEQRES 44 B 627 LYS GLY GLN GLU VAL CYS VAL LYS ILE GLU PRO ILE PRO SEQRES 45 B 627 GLY GLU SER PRO LYS MET PHE GLY ARG HIS PHE GLU ALA SEQRES 46 B 627 THR ASP ILE LEU VAL SER LYS ILE SER ARG GLN SER ILE SEQRES 47 B 627 ASP ALA LEU LYS ASP TRP PHE ARG ASP GLU MET GLN LYS SEQRES 48 B 627 SER ASP TRP GLN LEU ILE VAL GLU LEU LYS LYS VAL PHE SEQRES 49 B 627 GLU ILE ILE SEQRES 1 C 504 G C C A G C C C C C U G A SEQRES 2 C 504 U G G G G G C G A C A C U SEQRES 3 C 504 C C A C C A U G A A U C A SEQRES 4 C 504 C U C C C C U G U G A G G SEQRES 5 C 504 A A C U A C U G U C U U C SEQRES 6 C 504 A C G C A G A A A G C G U SEQRES 7 C 504 C U A G C C A U G G C G U SEQRES 8 C 504 U A G U A U G A G U G U C SEQRES 9 C 504 G U G C A G C C U C C A G SEQRES 10 C 504 G A C C C C C C C U C C C SEQRES 11 C 504 G G G A G A G C C A U A G SEQRES 12 C 504 U G G U C U G C G G A A C SEQRES 13 C 504 C G G U G A G U A C A C C SEQRES 14 C 504 G G A A U U G C C A G G A SEQRES 15 C 504 C G A C C G G G U C C U U SEQRES 16 C 504 U C U U G G A U A A A C C SEQRES 17 C 504 C G C U C A A U G C C U G SEQRES 18 C 504 G A G A U U U G G G C G U SEQRES 19 C 504 G C C C C C G C A A G A C SEQRES 20 C 504 U G C U A G C C G A G U A SEQRES 21 C 504 G U G U U G G G U C G C G SEQRES 22 C 504 A A A G G C C U U G U G G SEQRES 23 C 504 U A C U G C C U G A U A G SEQRES 24 C 504 G G U G C U U G C G A G U SEQRES 25 C 504 G C C C C G G G A G G U C SEQRES 26 C 504 U C G U A G A C C G U G C SEQRES 27 C 504 A C C A U G A G C A C G A SEQRES 28 C 504 A U C C U A A A C C U C A SEQRES 29 C 504 A A G A A A A A C C A A A SEQRES 30 C 504 C G U A A C A C C A A C C SEQRES 31 C 504 G U C G C C C A C A G G A SEQRES 32 C 504 C G U C A A G U U C C C G SEQRES 33 C 504 G G U G G C G G U C U A G SEQRES 34 C 504 A C G C C G A G A U C A G SEQRES 35 C 504 A A A U C C C U C U C U C SEQRES 36 C 504 G G A U C G C A U U U G G SEQRES 37 C 504 A C U U C U G C C U U C G SEQRES 38 C 504 G G C A C C A C G G U C G SEQRES 39 C 504 G A U C C G A A U U HET GNP B2434 32 HET MG B2435 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 MG MG 2+ HELIX 1 1 SER B 809 SER B 835 1 27 HELIX 2 2 GLY B 857 GLN B 871 1 15 HELIX 3 3 LEU B 889 THR B 896 1 8 HELIX 4 4 LYS B 897 ASP B 903 5 7 HELIX 5 5 ASP B 903 ARG B 908 5 6 HELIX 6 6 SER B 922 ASN B 925 5 4 HELIX 7 7 GLU B 948 LYS B 962 1 15 HELIX 8 8 LYS B 971 LEU B 975 5 5 HELIX 9 9 ASP B 985 LYS B 991 1 7 HELIX 10 10 LYS B 994 GLN B 1015 1 22 HELIX 11 11 TYR B 1023 ASN B 1025 5 3 HELIX 12 12 GLY B 1044 LEU B 1060 1 17 HELIX 13 13 SER B 1061 ALA B 1065 5 5 HELIX 14 14 LYS B 1174 GLN B 1183 1 10 HELIX 15 15 THR B 1201 SER B 1215 1 15 HELIX 16 16 HIS B 1228 GLU B 1240 1 13 HELIX 17 17 GLU B 1256 ASP B 1264 1 9 HELIX 18 18 ILE B 1275 HIS B 1300 1 26 HELIX 19 19 GLY B 1368 GLU B 1370 5 3 HELIX 20 20 SER B 1401 ALA B 1407 1 7 HELIX 21 21 ASP B 1414 LYS B 1429 1 16 SHEET 1 BA 7 ALA B 884 PRO B 888 0 SHEET 2 BA 7 GLY B 911 ASP B 916 -1 O MET B 912 N VAL B 887 SHEET 3 BA 7 VAL B 847 GLY B 852 1 O ILE B 848 N ILE B 915 SHEET 4 BA 7 ILE B 936 ASP B 942 1 O ILE B 936 N CYS B 849 SHEET 5 BA 7 PHE B 965 ASN B 970 1 O ILE B 966 N LEU B 939 SHEET 6 BA 7 VAL B1032 PRO B1036 1 O SER B1033 N VAL B 967 SHEET 7 BA 7 ALA B1019 LEU B1021 1 O ALA B1020 N LEU B1034 SHEET 1 BB 2 ARG B 927 ASN B 928 0 SHEET 2 BB 2 SER B 931 SER B 932 -1 O SER B 931 N ASN B 928 SHEET 1 BC 5 GLU B1076 ALA B1079 0 SHEET 2 BC 5 THR B1085 LEU B1091 -1 O THR B1086 N LYS B1078 SHEET 3 BC 5 GLN B1143 GLY B1149 -1 O GLN B1143 N LEU B1091 SHEET 4 BC 5 PRO B1110 LEU B1120 -1 N ARG B1116 O LEU B1148 SHEET 5 BC 5 GLU B1134 HIS B1136 -1 O GLU B1134 N LEU B1120 SHEET 1 BD 6 GLU B1076 ALA B1079 0 SHEET 2 BD 6 THR B1085 LEU B1091 -1 O THR B1086 N LYS B1078 SHEET 3 BD 6 GLN B1143 GLY B1149 -1 O GLN B1143 N LEU B1091 SHEET 4 BD 6 PRO B1110 LEU B1120 -1 N ARG B1116 O LEU B1148 SHEET 5 BD 6 THR B1101 PRO B1105 -1 O ILE B1102 N THR B1113 SHEET 6 BD 6 LEU B1162 VAL B1163 -1 O LEU B1162 N ILE B1103 SHEET 1 BE 2 GLU B1134 HIS B1136 0 SHEET 2 BE 2 PRO B1110 LEU B1120 -1 O LEU B1118 N HIS B1136 SHEET 1 BF 2 ARG B1095 LYS B1097 0 SHEET 2 BF 2 GLU B1138 GLU B1140 -1 O VAL B1139 N LEU B1096 SHEET 1 BG 4 GLY B1221 ILE B1224 0 SHEET 2 BG 4 TYR B1196 ALA B1199 1 O VAL B1197 N ASN B1223 SHEET 3 BG 4 VAL B1247 PHE B1251 1 O VAL B1247 N TYR B1196 SHEET 4 BG 4 ARG B1269 ALA B1273 1 O ARG B1269 N ILE B1248 SHEET 1 BH 7 VAL B1364 LYS B1366 0 SHEET 2 BH 7 VAL B1323 LYS B1334 -1 O VAL B1333 N ALA B1365 SHEET 3 BH 7 CYS B1306 ASN B1317 -1 O LYS B1307 N GLU B1329 SHEET 4 BH 7 ILE B1395 SER B1398 -1 O LEU B1396 N MET B1308 SHEET 5 BH 7 PRO B1338 CYS B1340 -1 O CYS B1340 N VAL B1397 SHEET 6 BH 7 GLY B1350 VAL B1352 -1 O GLY B1350 N MET B1339 SHEET 7 BH 7 ILE B1375 PRO B1377 -1 O GLU B1376 N ILE B1351 SHEET 1 BI 2 ILE B1355 VAL B1357 0 SHEET 2 BI 2 LYS B1360 VAL B1362 -1 O LYS B1360 N VAL B1357 LINK O2B GNP B2434 MG MG B2435 1555 1555 2.77 LINK O1A GNP B2434 MG MG B2435 1555 1555 2.63 LINK MG MG B2435 OG1 THR B 859 1555 1555 2.94 SITE 1 AC1 16 VAL B 854 ASP B 855 THR B 856 GLY B 857 SITE 2 AC1 16 LYS B 858 THR B 859 LYS B 860 GLU B 921 SITE 3 AC1 16 ASN B 970 LYS B 971 ASP B 973 ARG B 974 SITE 4 AC1 16 SER B1038 ALA B1039 HIS B1040 MG B2435 SITE 1 AC2 2 THR B 859 GNP B2434 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000