HEADER HYDROLASE/DNA 24-JUN-14 4UQM TITLE CRYSTAL STRUCTURE DETERMINATION OF URACIL-DNA N-GLYCOSYLASE (UNG) FROM TITLE 2 DEINOCOCCUS RADIODURANS IN COMPLEX WITH DNA - NEW INSIGHTS INTO THE TITLE 3 ROLE OF THE LEUCINE-LOOP FOR DAMAGE RECOGNITION AND REPAIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL-DNA GLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDG, URACIL DNA GLYCOSYLASE; COMPND 5 EC: 3.2.2.27; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: RESIDUES 1-15 AND 246-247 NOT VISIBLE IN ELECTRON COMPND 9 DENSITY; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: 5'-D(*CP*CP*TP*AP*TP*CP*CP*AP*AAB*GP*TP*CP*TP*CP*CP*G)-3'; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: NUCLEOTIDE 9 IS ABASIC; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: 5'-D(*GP*CP*GP*GP*AP*GP*AP*CP*AP*TP*GP*GP*AP*CP*AP*G)-3'; COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS HYDROLASE-DNA COMPLEX, BASE EXCISION REPAIR, RADIATION RESISTANCE, KEYWDS 2 DNA DAMAGE, DNA REPAIR, PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.L.PEDERSEN,K.A.JOHNSON,C.E.MCVEY,I.LEIROS,E.MOE REVDAT 5 10-JAN-24 4UQM 1 REMARK LINK REVDAT 4 18-APR-18 4UQM 1 JRNL REVDAT 3 27-SEP-17 4UQM 1 REMARK REVDAT 2 14-OCT-15 4UQM 1 JRNL REVDAT 1 12-AUG-15 4UQM 0 JRNL AUTH H.L.PEDERSEN,K.A.JOHNSON,C.E.MCVEY,I.LEIROS,E.MOE JRNL TITL STRUCTURE DETERMINATION OF URACIL-DNA N-GLYCOSYLASE FROM JRNL TITL 2 DEINOCOCCUS RADIODURANS IN COMPLEX WITH DNA. JRNL REF ACTA CRYSTALLOGR. D BIOL. V. 71 2137 2015 JRNL REF 2 CRYSTALLOGR. JRNL REFN ESSN 1399-0047 JRNL PMID 26457437 JRNL DOI 10.1107/S1399004715014157 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 74096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3916 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5188 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 277 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1829 REMARK 3 NUCLEIC ACID ATOMS : 457 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.032 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2465 ; 0.014 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 2101 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3445 ; 1.719 ; 1.774 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4862 ; 1.175 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 247 ; 6.015 ; 5.789 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;35.245 ;23.295 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 304 ;11.405 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.369 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 351 ; 0.240 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2439 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 573 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 921 ; 0.978 ; 1.143 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 920 ; 0.977 ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1151 ; 1.088 ; 1.717 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1152 ; 1.087 ; 2.568 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1544 ; 1.462 ; 1.288 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1544 ; 1.462 ; 1.289 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2292 ; 1.583 ; 1.906 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4468 ; 1.768 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4352 ; 1.683 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2437 ; 8.999 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2323 ; 4.297 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1363 -40.5995 -5.4474 REMARK 3 T TENSOR REMARK 3 T11: 0.1048 T22: 0.1097 REMARK 3 T33: 0.1680 T12: -0.0607 REMARK 3 T13: 0.0088 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.6445 L22: 1.6296 REMARK 3 L33: 3.5554 L12: -0.1729 REMARK 3 L13: 0.5402 L23: -0.6827 REMARK 3 S TENSOR REMARK 3 S11: -0.0830 S12: -0.1313 S13: -0.2473 REMARK 3 S21: 0.0580 S22: 0.0235 S23: 0.2741 REMARK 3 S31: 0.2470 S32: -0.3825 S33: 0.0595 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4818 -29.2877 -3.6460 REMARK 3 T TENSOR REMARK 3 T11: 0.0051 T22: 0.0656 REMARK 3 T33: 0.0572 T12: -0.0065 REMARK 3 T13: 0.0009 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.8418 L22: 1.4135 REMARK 3 L33: 2.5960 L12: -0.0046 REMARK 3 L13: -0.2367 L23: 0.5336 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: -0.0702 S13: -0.0795 REMARK 3 S21: 0.0548 S22: -0.0312 S23: 0.1036 REMARK 3 S31: -0.0095 S32: -0.1635 S33: 0.0447 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3915 -18.2943 -13.1172 REMARK 3 T TENSOR REMARK 3 T11: 0.0858 T22: 0.0781 REMARK 3 T33: 0.0388 T12: 0.0124 REMARK 3 T13: 0.0017 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 3.3297 L22: 3.9907 REMARK 3 L33: 2.8588 L12: -0.1880 REMARK 3 L13: 0.4517 L23: -1.7375 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: 0.0299 S13: 0.2136 REMARK 3 S21: 0.0137 S22: -0.0782 S23: 0.2094 REMARK 3 S31: -0.3112 S32: -0.1749 S33: 0.0380 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4716 -19.4303 -20.4948 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.0987 REMARK 3 T33: 0.0624 T12: -0.0484 REMARK 3 T13: 0.0167 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 1.8048 L22: 2.1376 REMARK 3 L33: 5.4455 L12: -1.0862 REMARK 3 L13: -0.3513 L23: 1.3183 REMARK 3 S TENSOR REMARK 3 S11: 0.0732 S12: 0.1250 S13: 0.1287 REMARK 3 S21: -0.2228 S22: -0.0014 S23: -0.2443 REMARK 3 S31: -0.3371 S32: 0.2228 S33: -0.0719 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7173 -23.9029 -21.7307 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.0690 REMARK 3 T33: 0.0307 T12: 0.0040 REMARK 3 T13: -0.0031 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.0200 L22: 2.1961 REMARK 3 L33: 3.0861 L12: 0.2971 REMARK 3 L13: 0.0491 L23: -1.0439 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: 0.1329 S13: 0.0346 REMARK 3 S21: -0.1671 S22: 0.0084 S23: 0.1416 REMARK 3 S31: -0.1783 S32: -0.0824 S33: 0.0113 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0099 -36.3683 -9.7041 REMARK 3 T TENSOR REMARK 3 T11: 0.0503 T22: 0.0586 REMARK 3 T33: 0.0823 T12: 0.0122 REMARK 3 T13: 0.0007 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.1291 L22: 1.5954 REMARK 3 L33: 1.7942 L12: -0.0829 REMARK 3 L13: -0.2637 L23: 0.2406 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.0414 S13: -0.2060 REMARK 3 S21: 0.0322 S22: 0.0215 S23: -0.1014 REMARK 3 S31: 0.2873 S32: 0.1584 S33: 0.0047 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 209 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9063 -28.3589 -24.0581 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.1026 REMARK 3 T33: 0.0443 T12: -0.0037 REMARK 3 T13: 0.0335 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.7214 L22: 1.7036 REMARK 3 L33: 2.4193 L12: -0.1274 REMARK 3 L13: 0.6452 L23: 0.2637 REMARK 3 S TENSOR REMARK 3 S11: 0.0784 S12: 0.1547 S13: -0.1178 REMARK 3 S21: -0.2448 S22: -0.0275 S23: -0.0995 REMARK 3 S31: 0.0578 S32: 0.1836 S33: -0.0510 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 8 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6335 -8.1070 -3.6150 REMARK 3 T TENSOR REMARK 3 T11: 0.3354 T22: 0.2667 REMARK 3 T33: 0.4186 T12: -0.0622 REMARK 3 T13: -0.0111 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 0.0171 L22: 0.9076 REMARK 3 L33: 1.0965 L12: 0.1109 REMARK 3 L13: 0.1235 L23: 0.9940 REMARK 3 S TENSOR REMARK 3 S11: 0.0441 S12: -0.0212 S13: 0.0278 REMARK 3 S21: -0.0240 S22: -0.0417 S23: -0.0695 REMARK 3 S31: -0.0675 S32: -0.0890 S33: -0.0023 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 15 REMARK 3 ORIGIN FOR THE GROUP (A): 28.1265 -29.1384 -2.1033 REMARK 3 T TENSOR REMARK 3 T11: 0.1938 T22: 0.1815 REMARK 3 T33: 0.1793 T12: -0.0274 REMARK 3 T13: -0.0397 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 7.2369 L22: 0.9096 REMARK 3 L33: 2.3725 L12: -2.5556 REMARK 3 L13: 4.1259 L23: -1.4476 REMARK 3 S TENSOR REMARK 3 S11: 0.1697 S12: -0.0720 S13: -0.3270 REMARK 3 S21: -0.0277 S22: 0.0175 S23: 0.0951 REMARK 3 S31: 0.1585 S32: -0.0488 S33: -0.1872 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 12 REMARK 3 ORIGIN FOR THE GROUP (A): 25.1618 -19.9122 -2.3512 REMARK 3 T TENSOR REMARK 3 T11: 0.0218 T22: 0.2373 REMARK 3 T33: 0.2584 T12: -0.0391 REMARK 3 T13: -0.0210 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 3.3407 L22: 3.7183 REMARK 3 L33: 2.2037 L12: -1.1912 REMARK 3 L13: 0.8743 L23: 1.8879 REMARK 3 S TENSOR REMARK 3 S11: 0.0363 S12: 0.0468 S13: 0.0449 REMARK 3 S21: -0.1291 S22: 0.0151 S23: 0.3302 REMARK 3 S31: -0.0262 S32: -0.1611 S33: -0.0514 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1320 REMARK 3 T33: 0.1320 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1320 REMARK 3 T33: 0.1320 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1320 REMARK 3 T33: 0.1320 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1320 REMARK 3 T33: 0.1320 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 220 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1320 REMARK 3 T33: 0.1320 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 7 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1320 REMARK 3 T33: 0.1320 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 15 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0405 -21.3796 -7.3332 REMARK 3 T TENSOR REMARK 3 T11: 0.1225 T22: 0.1141 REMARK 3 T33: 0.0882 T12: -0.0216 REMARK 3 T13: 0.0055 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 10.8156 L22: 0.0581 REMARK 3 L33: 0.5378 L12: 0.7251 REMARK 3 L13: -2.2550 L23: -0.1261 REMARK 3 S TENSOR REMARK 3 S11: -0.0482 S12: -0.1839 S13: -0.2261 REMARK 3 S21: -0.0221 S22: -0.0031 S23: -0.0154 REMARK 3 S31: -0.0291 S32: 0.0494 S33: 0.0513 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 8 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1320 REMARK 3 T33: 0.1320 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 12 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1320 REMARK 3 T33: 0.1320 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES WITH TLS ADDED TERMINAL DNA NUCLEOTIDES HAD REMARK 3 HIGH B-FACTORS, BUT WERE VISIBLE IN ELECTRON DENSITY CONTOURED REMARK 3 AT LOW SIGMA LEVEL. REMARK 4 REMARK 4 4UQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1290061063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78013 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2BOO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M NACITRATE, PH4.6 20%(W/V) REMARK 280 PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.15000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.36000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.36000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 GLN A 4 REMARK 465 PRO A 5 REMARK 465 ASP A 6 REMARK 465 LEU A 7 REMARK 465 PHE A 8 REMARK 465 GLY A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 ASP A 13 REMARK 465 ALA A 14 REMARK 465 PRO A 15 REMARK 465 THR A 245 REMARK 465 GLU A 246 REMARK 465 GLU A 247 REMARK 465 DC B 1 REMARK 465 DC B 2 REMARK 465 DT B 3 REMARK 465 DG B 16 REMARK 465 DG C 1 REMARK 465 DC C 2 REMARK 465 DC C 14 REMARK 465 DA C 15 REMARK 465 DG C 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 16 CG CD NE CZ NH1 NH2 REMARK 470 DA B 4 P OP1 OP2 O5' C5' REMARK 470 DT B 5 O5' C5' REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 197 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 197 CD LYS A 197 CE -0.177 REMARK 500 DC B 6 O3' DC B 7 P -0.086 REMARK 500 DC B 7 O3' DA B 8 P 0.136 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 LYS A 197 CD - CE - NZ ANGL. DEV. = -15.5 DEGREES REMARK 500 ARG A 233 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 233 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 DC B 7 C3' - O3' - P ANGL. DEV. = 10.9 DEGREES REMARK 500 DC B 7 C3' - O3' - P ANGL. DEV. = 20.9 DEGREES REMARK 500 DG C 3 O5' - P - OP1 ANGL. DEV. = -5.6 DEGREES REMARK 500 DG C 11 O3' - P - OP2 ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 90 -72.00 -105.80 REMARK 500 HIS A 92 33.31 -141.61 REMARK 500 PHE A 96 -13.46 73.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2019 DISTANCE = 6.69 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1246 DBREF 4UQM A 1 247 UNP Q9RWH9 UNG_DEIRA 1 247 DBREF 4UQM B 1 16 PDB 4UQM 4UQM 1 16 DBREF 4UQM C 1 16 PDB 4UQM 4UQM 1 16 SEQADV 4UQM ALA A 150 UNP Q9RWH9 GLY 150 ENGINEERED MUTATION SEQRES 1 A 247 MET THR ASP GLN PRO ASP LEU PHE GLY LEU ALA PRO ASP SEQRES 2 A 247 ALA PRO ARG PRO ILE ILE PRO ALA ASN LEU PRO GLU ASP SEQRES 3 A 247 TRP GLN GLU ALA LEU LEU PRO GLU PHE SER ALA PRO TYR SEQRES 4 A 247 PHE HIS GLU LEU THR ASP PHE LEU ARG GLN GLU ARG LYS SEQRES 5 A 247 GLU TYR THR ILE TYR PRO PRO ALA PRO ASP VAL PHE ASN SEQRES 6 A 247 ALA LEU ARG TYR THR PRO LEU GLY GLU VAL LYS VAL LEU SEQRES 7 A 247 ILE LEU GLY GLN ASP PRO TYR HIS GLY PRO ASN GLN ALA SEQRES 8 A 247 HIS GLY LEU SER PHE SER VAL ARG PRO GLY VAL ARG VAL SEQRES 9 A 247 PRO PRO SER LEU ARG ASN ILE TYR LYS GLU LEU THR GLU SEQRES 10 A 247 ASP ILE PRO GLY PHE VAL ALA PRO LYS HIS GLY TYR LEU SEQRES 11 A 247 ARG SER TRP ALA GLU GLN GLY VAL LEU LEU LEU ASN ALA SEQRES 12 A 247 VAL LEU THR VAL ARG ALA ALA GLN ALA ASN SER HIS GLN SEQRES 13 A 247 GLY LYS GLY TRP GLU HIS PHE THR ASP ALA VAL ILE LYS SEQRES 14 A 247 ALA VAL ASN ALA LYS GLU GLU ARG VAL VAL PHE ILE LEU SEQRES 15 A 247 TRP GLY SER TYR ALA ARG LYS LYS LYS LYS LEU ILE THR SEQRES 16 A 247 GLY LYS ASN HIS VAL VAL ILE GLU SER GLY HIS PRO SER SEQRES 17 A 247 PRO LEU SER GLU GLN TYR PHE PHE GLY THR ARG PRO PHE SEQRES 18 A 247 SER LYS THR ASN GLU ALA LEU GLU LYS ALA GLY ARG GLY SEQRES 19 A 247 PRO VAL GLU TRP GLN LEU PRO ALA THR VAL THR GLU GLU SEQRES 1 B 16 DC DC DT DA DT DC DC DA AAB DG DT DC DT SEQRES 2 B 16 DC DC DG SEQRES 1 C 16 DG DC DG DG DA DG DA DC DA DT DG DG DA SEQRES 2 C 16 DC DA DG HET AAB B 9 12 HET CL A1245 1 HET GOL A1246 6 HETNAM AAB 2'-DEOXY-RIBOFURANOSE-5'-MONOPHOSPHATE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN AAB ABASIC DEOXYRIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 AAB C5 H11 O7 P FORMUL 4 CL CL 1- FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *240(H2 O) HELIX 1 1 PRO A 24 SER A 36 1 13 HELIX 2 2 ALA A 37 TYR A 54 1 18 HELIX 3 3 PRO A 59 VAL A 63 5 5 HELIX 4 4 PHE A 64 THR A 70 1 7 HELIX 5 5 PRO A 71 VAL A 75 5 5 HELIX 6 6 PRO A 105 ILE A 119 1 15 HELIX 7 7 LEU A 130 GLU A 135 1 6 HELIX 8 8 GLY A 159 ALA A 173 1 15 HELIX 9 9 GLY A 184 LYS A 189 1 6 HELIX 10 10 LYS A 190 ILE A 194 5 5 HELIX 11 11 SER A 208 PHE A 215 5 8 HELIX 12 12 ARG A 219 ALA A 231 1 13 SHEET 1 AA 2 ILE A 56 TYR A 57 0 SHEET 2 AA 2 VAL A 147 ARG A 148 -1 O VAL A 147 N TYR A 57 SHEET 1 AB 4 VAL A 138 ASN A 142 0 SHEET 2 AB 4 VAL A 77 GLY A 81 1 O VAL A 77 N LEU A 139 SHEET 3 AB 4 VAL A 179 TRP A 183 1 O VAL A 179 N LEU A 78 SHEET 4 AB 4 VAL A 200 SER A 204 1 O VAL A 200 N PHE A 180 LINK O3'A DA B 8 P AAB B 9 1555 1555 1.58 LINK O3'B DA B 8 P AAB B 9 1555 1555 1.61 LINK O3' AAB B 9 P DG B 10 1555 1555 1.60 CISPEP 1 TYR A 57 PRO A 58 0 -10.67 SITE 1 AC1 5 PRO A 84 TYR A 85 SER A 95 PHE A 96 SITE 2 AC1 5 ASN A 142 SITE 1 AC2 5 GLN A 82 ALA A 152 HOH A2199 AAB B 9 SITE 2 AC2 5 DG B 10 CRYST1 84.300 98.720 43.940 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011862 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022758 0.00000