HEADER HYDROLASE 30-JUN-14 4URI TITLE CRYSTAL STRUCTURE OF CHITINASE-LIKE AGGLUTININ ROBPSCRA FROM ROBINIA TITLE 2 PSEUDOACACIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE-RELATED AGGLUTININ; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CHITINASE-LIKE AGGLUTININ, ROBPSCRA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROBINIA PSEUDOACACIA; SOURCE 3 ORGANISM_COMMON: BLACK LOCUST; SOURCE 4 ORGANISM_TAXID: 35938; SOURCE 5 TISSUE: BARK KEYWDS HYDROLASE, CHITINASE-LIKE PROTEIN, GLYCOSIDE HYDROLASE FAMILY GH18, KEYWDS 2 PLANT LECTIN, AGGLUTININ EXPDTA X-RAY DIFFRACTION AUTHOR G.SULZENBACHER,V.ROIG-ZAMBONI,W.J.PEUMANS,B.HENRISSAT,E.J.M.VAN AUTHOR 2 DAMME,Y.BOURNE REVDAT 3 10-JAN-24 4URI 1 REMARK SHEET LINK REVDAT 2 13-MAY-15 4URI 1 JRNL REVDAT 1 11-MAR-15 4URI 0 JRNL AUTH G.SULZENBACHER,V.ROIG-ZAMBONI,W.J.PEUMANS,B.HENRISSAT, JRNL AUTH 2 E.J.VAN DAMME,Y.BOURNE JRNL TITL STRUCTURAL BASIS FOR CARBOHYDRATE BINDING PROPERTIES OF A JRNL TITL 2 PLANT CHITINASE-LIKE AGGLUTININ WITH CONSERVED CATALYTIC JRNL TITL 3 MACHINERY. JRNL REF J.STRUCT.BIOL. V. 190 115 2015 JRNL REFN ISSN 1047-8477 JRNL PMID 25727185 JRNL DOI 10.1016/J.JSB.2015.01.013 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 45067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2398 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3235 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5210 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : 1.13000 REMARK 3 B12 (A**2) : -0.08000 REMARK 3 B13 (A**2) : -0.89000 REMARK 3 B23 (A**2) : -1.86000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.934 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5448 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4954 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7444 ; 1.421 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11383 ; 0.813 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 689 ; 6.124 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;35.884 ;23.770 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 795 ;12.783 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.479 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 800 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6296 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1342 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1424 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4780 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2714 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3099 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 142 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.000 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 78 ; 0.351 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 88 ; 0.277 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 336 REMARK 3 ORIGIN FOR THE GROUP (A): -24.4388 0.4795 30.2690 REMARK 3 T TENSOR REMARK 3 T11: 0.0108 T22: 0.0227 REMARK 3 T33: 0.0350 T12: 0.0042 REMARK 3 T13: 0.0070 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.6170 L22: 1.2605 REMARK 3 L33: 0.5998 L12: 0.5455 REMARK 3 L13: 0.3103 L23: 0.6707 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: 0.0444 S13: -0.0376 REMARK 3 S21: -0.0664 S22: -0.0353 S23: 0.0352 REMARK 3 S31: -0.0365 S32: 0.0168 S33: 0.0830 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 337 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2359 8.5899 -1.0300 REMARK 3 T TENSOR REMARK 3 T11: 0.0247 T22: 0.0149 REMARK 3 T33: 0.0413 T12: 0.0075 REMARK 3 T13: -0.0015 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.5893 L22: 1.4178 REMARK 3 L33: 0.6612 L12: -0.5102 REMARK 3 L13: -0.4492 L23: 0.9281 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: 0.0151 S13: 0.0605 REMARK 3 S21: 0.1104 S22: 0.0258 S23: -0.0193 REMARK 3 S31: 0.0702 S32: 0.0257 S33: -0.0010 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4URI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1290061125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH MAR25 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47466 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 67.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MODEL GENERATED BY PHYRE SERVER BASED ON PDB ENTRY REMARK 200 1NWU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35,8% (V/V) MPD, 0.1 M NA/K2 PHOSPHATE REMARK 280 PH 7.0, PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2146 O HOH B 2147 1.99 REMARK 500 O HOH B 2134 O HOH B 2135 2.08 REMARK 500 O HOH B 2089 O HOH B 2090 2.18 REMARK 500 NZ LYS B 39 O HOH B 2028 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2117 O HOH B 2152 1566 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 333 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 159 149.82 -170.18 REMARK 500 VAL A 280 77.34 63.99 REMARK 500 VAL B 280 73.28 65.87 REMARK 500 ASP B 295 -164.96 -104.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 501 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS OF ENTRY A1YZD2 HAVE PUBLISHED AN UPDDATED REMARK 999 SEQUENCE IN: PLANT PHYSIOL. 2007 JUN;144(2):662-72. REMARK 999 EPUB 2006 NOV 10. A NOVEL FAMILY OF LECTINS EVOLUTIONARILY REMARK 999 RELATED TO CLASS V CHITINASES: AN EXAMPLE OF REMARK 999 NEOFUNCTIONALIZATION IN LEGUMES. VAN DAMME EJ1, CULERRIER R, REMARK 999 BARRE A, ALVAREZ R, ROUGE P, PEUMANS WJ. DBREF 4URI A 2 328 UNP A1YZD2 A1YZD2_ROBPS 1 327 DBREF 4URI B 2 328 UNP A1YZD2 A1YZD2_ROBPS 1 327 SEQADV 4URI ALA A 1 UNP A1YZD2 SEE REMARK 999 SEQADV 4URI GLU A 329 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI THR A 330 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI ALA A 331 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI SER A 332 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI ARG A 333 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI ALA A 334 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI TRP A 335 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI GLY A 336 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI THR A 337 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI ARG A 284 UNP A1YZD2 CYS 283 SEE REMARK 999 SEQADV 4URI ALA B 1 UNP A1YZD2 SEE REMARK 999 SEQADV 4URI GLU B 329 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI THR B 330 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI ALA B 331 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI SER B 332 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI ARG B 333 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI ALA B 334 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI TRP B 335 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI GLY B 336 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI THR B 337 UNP A1YZD2 EXPRESSION TAG SEQADV 4URI ARG B 284 UNP A1YZD2 CYS 283 SEE REMARK 999 SEQRES 1 A 337 ALA ILE LYS GLY GLY TYR TRP TYR SER GLY SER GLY LEU SEQRES 2 A 337 ALA VAL SER ASP ILE ASN PRO SER HIS PHE THR HIS LEU SEQRES 3 A 337 PHE CYS ALA PHE ALA ASP LEU ASP PRO ASN THR ASN LYS SEQRES 4 A 337 LEU THR ILE SER SER SER ASN ALA ALA ALA PHE SER THR SEQRES 5 A 337 PHE THR GLN THR VAL ARG ALA LYS ASN PRO SER VAL LYS SEQRES 6 A 337 THR LEU LEU SER ILE GLY GLY GLY GLY GLY ARG ALA LEU SEQRES 7 A 337 ALA ALA VAL PHE ALA ASN MET ALA SER GLN ALA SER ARG SEQRES 8 A 337 ARG LYS SER PHE ILE ASP SER SER ILE GLN LEU ALA ARG SEQRES 9 A 337 ARG ASN ASN PHE HIS GLY LEU ASP LEU ASP TRP GLU TYR SEQRES 10 A 337 PRO SER SER ASP ILE ASP LYS THR ASN PHE ALA SER LEU SEQRES 11 A 337 ILE ARG GLU TRP ARG ALA ALA VAL ALA THR GLU SER SER SEQRES 12 A 337 THR SER GLY THR PRO ALA LEU LEU LEU SER ALA ALA VAL SEQRES 13 A 337 GLY GLY SER ASP GLN ILE THR PRO LEU LYS TYR TYR PRO SEQRES 14 A 337 GLY GLU ALA ILE ALA ASN ASN LEU ASP TRP VAL ASN VAL SEQRES 15 A 337 MET THR TYR ASP LEU TYR THR SER ASP SER TYR PRO THR SEQRES 16 A 337 LEU THR GLN PRO PRO ALA PRO LEU PHE TYR PRO ARG GLY SEQRES 17 A 337 ILE PHE SER ALA ASP GLU GLY ILE THR LYS TRP ILE GLN SEQRES 18 A 337 SER GLY VAL PRO GLU SER LYS LEU ALA LEU GLY LEU PRO SEQRES 19 A 337 PHE TYR GLY PHE LYS TRP ARG LEU SER ASP PRO ASN ASN SEQRES 20 A 337 HIS GLY LEU PHE ALA PRO ALA THR GLN GLY LEU GLY ALA SEQRES 21 A 337 VAL LYS TYR LYS ASP ILE VAL ASN THR GLY GLY GLN VAL SEQRES 22 A 337 GLU PHE ASP SER THR TYR VAL THR ASN TYR ARG PHE LYS SEQRES 23 A 337 GLY THR ASP TRP TYR GLY TYR ASP ASP THR GLN SER ILE SEQRES 24 A 337 SER ALA LYS VAL ALA TYR ALA LYS GLN ARG GLY LEU PHE SEQRES 25 A 337 GLY TYR PHE ALA TRP HIS ILE GLU GLN ASP SER ASN TRP SEQRES 26 A 337 ALA LEU SER GLU THR ALA SER ARG ALA TRP GLY THR SEQRES 1 B 337 ALA ILE LYS GLY GLY TYR TRP TYR SER GLY SER GLY LEU SEQRES 2 B 337 ALA VAL SER ASP ILE ASN PRO SER HIS PHE THR HIS LEU SEQRES 3 B 337 PHE CYS ALA PHE ALA ASP LEU ASP PRO ASN THR ASN LYS SEQRES 4 B 337 LEU THR ILE SER SER SER ASN ALA ALA ALA PHE SER THR SEQRES 5 B 337 PHE THR GLN THR VAL ARG ALA LYS ASN PRO SER VAL LYS SEQRES 6 B 337 THR LEU LEU SER ILE GLY GLY GLY GLY GLY ARG ALA LEU SEQRES 7 B 337 ALA ALA VAL PHE ALA ASN MET ALA SER GLN ALA SER ARG SEQRES 8 B 337 ARG LYS SER PHE ILE ASP SER SER ILE GLN LEU ALA ARG SEQRES 9 B 337 ARG ASN ASN PHE HIS GLY LEU ASP LEU ASP TRP GLU TYR SEQRES 10 B 337 PRO SER SER ASP ILE ASP LYS THR ASN PHE ALA SER LEU SEQRES 11 B 337 ILE ARG GLU TRP ARG ALA ALA VAL ALA THR GLU SER SER SEQRES 12 B 337 THR SER GLY THR PRO ALA LEU LEU LEU SER ALA ALA VAL SEQRES 13 B 337 GLY GLY SER ASP GLN ILE THR PRO LEU LYS TYR TYR PRO SEQRES 14 B 337 GLY GLU ALA ILE ALA ASN ASN LEU ASP TRP VAL ASN VAL SEQRES 15 B 337 MET THR TYR ASP LEU TYR THR SER ASP SER TYR PRO THR SEQRES 16 B 337 LEU THR GLN PRO PRO ALA PRO LEU PHE TYR PRO ARG GLY SEQRES 17 B 337 ILE PHE SER ALA ASP GLU GLY ILE THR LYS TRP ILE GLN SEQRES 18 B 337 SER GLY VAL PRO GLU SER LYS LEU ALA LEU GLY LEU PRO SEQRES 19 B 337 PHE TYR GLY PHE LYS TRP ARG LEU SER ASP PRO ASN ASN SEQRES 20 B 337 HIS GLY LEU PHE ALA PRO ALA THR GLN GLY LEU GLY ALA SEQRES 21 B 337 VAL LYS TYR LYS ASP ILE VAL ASN THR GLY GLY GLN VAL SEQRES 22 B 337 GLU PHE ASP SER THR TYR VAL THR ASN TYR ARG PHE LYS SEQRES 23 B 337 GLY THR ASP TRP TYR GLY TYR ASP ASP THR GLN SER ILE SEQRES 24 B 337 SER ALA LYS VAL ALA TYR ALA LYS GLN ARG GLY LEU PHE SEQRES 25 B 337 GLY TYR PHE ALA TRP HIS ILE GLU GLN ASP SER ASN TRP SEQRES 26 B 337 ALA LEU SER GLU THR ALA SER ARG ALA TRP GLY THR HET MPD A 401 8 HET MPD A 402 8 HET MPD A 403 8 HET NA A 501 1 HET NA A 502 1 HET NA A 503 1 HET CL A 504 1 HET MPD B 401 8 HET MPD B 402 8 HET MPD B 403 8 HET CL B 501 1 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 3 MPD 6(C6 H14 O2) FORMUL 6 NA 3(NA 1+) FORMUL 9 CL 2(CL 1-) FORMUL 14 HOH *311(H2 O) HELIX 1 1 GLY A 10 GLY A 12 5 3 HELIX 2 2 ALA A 14 ILE A 18 5 5 HELIX 3 3 ASN A 19 PHE A 23 5 5 HELIX 4 4 ASN A 46 ALA A 59 1 14 HELIX 5 5 GLY A 74 GLN A 88 1 15 HELIX 6 6 GLN A 88 ASN A 106 1 19 HELIX 7 7 SER A 120 GLY A 146 1 27 HELIX 8 8 PRO A 164 TYR A 168 5 5 HELIX 9 9 PRO A 169 LEU A 177 1 9 HELIX 10 10 SER A 211 SER A 222 1 12 HELIX 11 11 PRO A 225 SER A 227 5 3 HELIX 12 12 TYR A 263 THR A 269 1 7 HELIX 13 13 ASP A 295 ARG A 309 1 15 HELIX 14 14 HIS A 318 ASP A 322 5 5 HELIX 15 15 TRP A 325 GLY A 336 1 12 HELIX 16 16 GLY B 10 GLY B 12 5 3 HELIX 17 17 ALA B 14 ILE B 18 5 5 HELIX 18 18 ASN B 19 PHE B 23 5 5 HELIX 19 19 SER B 43 ASN B 61 1 19 HELIX 20 20 GLY B 74 SER B 87 1 14 HELIX 21 21 GLN B 88 ASN B 106 1 19 HELIX 22 22 SER B 120 GLY B 146 1 27 HELIX 23 23 PRO B 164 TYR B 168 5 5 HELIX 24 24 PRO B 169 LEU B 177 1 9 HELIX 25 25 SER B 211 SER B 222 1 12 HELIX 26 26 PRO B 225 SER B 227 5 3 HELIX 27 27 TYR B 263 THR B 269 1 7 HELIX 28 28 ASP B 295 ARG B 309 1 15 HELIX 29 29 HIS B 318 ASP B 322 5 5 HELIX 30 30 TRP B 325 GLY B 336 1 12 SHEET 1 AA 9 ILE A 2 TYR A 8 0 SHEET 2 AA 9 GLY A 313 TRP A 317 1 O TYR A 314 N GLY A 4 SHEET 3 AA 9 LEU A 229 PRO A 234 1 O LEU A 231 N PHE A 315 SHEET 4 AA 9 TRP A 179 MET A 183 1 O VAL A 180 N ALA A 230 SHEET 5 AA 9 LEU A 151 GLY A 157 1 O ALA A 154 N ASN A 181 SHEET 6 AA 9 GLY A 110 ASP A 114 1 O LEU A 111 N SER A 153 SHEET 7 AA 9 LYS A 65 GLY A 71 1 O LEU A 68 N ASP A 112 SHEET 8 AA 9 HIS A 25 LEU A 33 1 O LEU A 26 N LEU A 67 SHEET 9 AA 9 ILE A 2 TYR A 8 1 N TYR A 8 O TYR A 6 SHEET 1 AB 5 ALA A 254 LYS A 262 0 SHEET 2 AB 5 TYR A 236 LEU A 242 -1 O GLY A 237 N VAL A 261 SHEET 3 AB 5 ASP A 289 TYR A 293 -1 O TRP A 290 N TRP A 240 SHEET 4 AB 5 THR A 281 LYS A 286 -1 O ASN A 282 N TYR A 293 SHEET 5 AB 5 GLN A 272 ASP A 276 -1 O GLN A 272 N PHE A 285 SHEET 1 BA 9 ILE B 2 TYR B 8 0 SHEET 2 BA 9 GLY B 313 TRP B 317 1 O TYR B 314 N GLY B 4 SHEET 3 BA 9 LEU B 229 PRO B 234 1 O LEU B 231 N PHE B 315 SHEET 4 BA 9 TRP B 179 MET B 183 1 O VAL B 180 N ALA B 230 SHEET 5 BA 9 LEU B 151 GLY B 157 1 O ALA B 154 N ASN B 181 SHEET 6 BA 9 GLY B 110 ASP B 114 1 O LEU B 111 N SER B 153 SHEET 7 BA 9 LYS B 65 GLY B 71 1 O LEU B 68 N ASP B 112 SHEET 8 BA 9 HIS B 25 LEU B 33 1 O LEU B 26 N LEU B 67 SHEET 9 BA 9 ILE B 2 TYR B 8 1 N TYR B 8 O TYR B 6 SHEET 1 BB 5 ALA B 254 LYS B 262 0 SHEET 2 BB 5 TYR B 236 LEU B 242 -1 O GLY B 237 N VAL B 261 SHEET 3 BB 5 ASP B 289 TYR B 293 -1 O TRP B 290 N TRP B 240 SHEET 4 BB 5 THR B 281 LYS B 286 -1 O ASN B 282 N TYR B 293 SHEET 5 BB 5 GLN B 272 ASP B 276 -1 O GLN B 272 N PHE B 285 LINK OG1 THR A 255 NA NA A 501 1555 1555 2.94 CISPEP 1 ALA A 29 PHE A 30 0 -2.75 CISPEP 2 GLU A 116 TYR A 117 0 7.21 CISPEP 3 TRP A 317 HIS A 318 0 -11.63 CISPEP 4 ALA B 29 PHE B 30 0 -1.55 CISPEP 5 GLY B 73 GLY B 74 0 -7.40 CISPEP 6 GLU B 116 TYR B 117 0 7.65 CISPEP 7 TRP B 317 HIS B 318 0 -12.07 SITE 1 AC1 8 TYR A 6 GLY A 73 ASP A 114 GLU A 116 SITE 2 AC1 8 ALA A 155 MET A 183 TYR A 185 TRP A 317 SITE 1 AC2 5 PHE A 204 TYR A 205 ILE A 209 SER A 211 SITE 2 AC2 5 ASP A 213 SITE 1 AC3 4 PHE A 204 THR A 278 PRO B 206 ARG B 207 SITE 1 AC4 6 SER A 142 PRO A 148 ALA A 149 ARG A 241 SITE 2 AC4 6 THR A 255 GLN A 256 SITE 1 AC5 2 ASN A 175 LYS A 228 SITE 1 AC6 2 ARG A 105 ASN A 106 SITE 1 AC7 2 GLN A 198 TYR A 205 SITE 1 AC8 7 TYR B 6 ASP B 114 GLU B 116 ALA B 155 SITE 2 AC8 7 MET B 183 TYR B 185 TRP B 317 SITE 1 AC9 6 PHE B 204 TYR B 205 ILE B 209 PHE B 210 SITE 2 AC9 6 SER B 211 ASP B 213 SITE 1 BC1 4 PRO A 206 ARG A 207 PHE B 204 THR B 278 SITE 1 BC2 3 TYR B 193 PRO B 194 THR B 195 CRYST1 43.100 53.221 71.271 106.01 94.12 107.59 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023202 0.007356 0.004183 0.00000 SCALE2 0.000000 0.019711 0.006494 0.00000 SCALE3 0.000000 0.000000 0.014811 0.00000 MTRIX1 1 0.999800 0.014440 -0.013510 21.60734 1 MTRIX2 1 0.013960 -0.999280 -0.035210 10.42658 1 MTRIX3 1 -0.014010 0.035010 -0.999290 28.90985 1