HEADER SUGAR BINDING PROTEIN 11-JUL-14 4USP TITLE X-RAY STRUCTURE OF THE DIMERIC CCL2 LECTIN IN NATIVE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCL2 LECTIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COPRINOPSIS CINEREA; SOURCE 3 ORGANISM_COMMON: INK CAP FUNGUS; SOURCE 4 ORGANISM_TAXID: 5346; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS SUGAR BINDING PROTEIN, LECTIN, FUNGAL EXPDTA X-RAY DIFFRACTION AUTHOR S.BLEULER-MARTINEZ,A.VARROT,M.SCHUBERT,M.STUTZ,R.SIEBER,M.HENGARTNER, AUTHOR 2 M.AEBI,M.KUNZLER REVDAT 5 10-JAN-24 4USP 1 REMARK REVDAT 4 03-MAY-17 4USP 1 JRNL REVDAT 3 25-JAN-17 4USP 1 JRNL REMARK REVDAT 2 16-SEP-15 4USP 1 AUTHOR REVDAT 1 22-JUL-15 4USP 0 JRNL AUTH S.BLEULER-MARTINEZ,K.STUTZ,R.SIEBER,M.COLLOT,J.M.MALLET, JRNL AUTH 2 M.HENGARTNER,M.SCHUBERT,A.VARROT,M.KUNZLER JRNL TITL DIMERIZATION OF THE FUNGAL DEFENSE LECTIN CCL2 IS ESSENTIAL JRNL TITL 2 FOR ITS TOXICITY AGAINST NEMATODES. JRNL REF GLYCOBIOLOGY V. 27 486 2017 JRNL REFN ESSN 1460-2423 JRNL PMID 27980000 JRNL DOI 10.1093/GLYCOB/CWW113 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 17392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 892 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1292 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2066 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.25000 REMARK 3 B22 (A**2) : 1.25000 REMARK 3 B33 (A**2) : -2.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.993 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2124 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1948 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2916 ; 1.694 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4470 ; 1.035 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 6.393 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;35.291 ;23.864 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 308 ;13.192 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.180 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2454 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 496 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1078 ; 0.822 ; 1.319 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1077 ; 0.815 ; 1.317 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1344 ; 1.356 ; 1.969 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1046 ; 1.554 ; 1.417 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8959 9.3819 68.9775 REMARK 3 T TENSOR REMARK 3 T11: 0.0055 T22: 0.1366 REMARK 3 T33: 0.0995 T12: 0.0158 REMARK 3 T13: 0.0068 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 2.5063 L22: 1.3829 REMARK 3 L33: 3.0041 L12: 0.4905 REMARK 3 L13: -0.0860 L23: 0.1812 REMARK 3 S TENSOR REMARK 3 S11: -0.0749 S12: -0.0952 S13: 0.0918 REMARK 3 S21: -0.0512 S22: 0.0538 S23: -0.0549 REMARK 3 S31: -0.0347 S32: -0.0204 S33: 0.0211 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8081 10.5886 36.9192 REMARK 3 T TENSOR REMARK 3 T11: 0.1516 T22: 0.2365 REMARK 3 T33: 0.1366 T12: -0.0317 REMARK 3 T13: 0.0084 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 1.4511 L22: 2.0180 REMARK 3 L33: 3.6546 L12: -0.0852 REMARK 3 L13: -1.2309 L23: 0.2114 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.2454 S13: -0.0352 REMARK 3 S21: -0.2155 S22: -0.0288 S23: 0.1060 REMARK 3 S31: 0.1320 S32: -0.5991 S33: 0.0275 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED DISORDERED REGIONS WERE REMARK 3 MODELED STEREOCHEMICALLY REMARK 4 REMARK 4 4USP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1290061146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9205 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18296 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 44.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4USO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MIDAS 1-14 15% PENTAERYTHRITOL REMARK 280 PROPOXYLATE 5/4 PO/OH 0.1M HEPES 7.50 0.2M SODIUM THIOCYANATE, REMARK 280 PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.45350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.96050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.96050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.72675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.96050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.96050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 152.18025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.96050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.96050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.72675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.96050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.96050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 152.18025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 101.45350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 GLY A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 SER A 0 REMARK 465 GLY A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 THR A 7 REMARK 465 MET B -10 REMARK 465 GLY B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 VAL B 6 REMARK 465 THR B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 45 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 45 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 58 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 11.93 -146.64 REMARK 500 ASN A 90 55.94 -165.66 REMARK 500 PHE A 133 -66.12 72.97 REMARK 500 ASP B 45 11.54 -144.68 REMARK 500 ASN B 90 52.61 -163.56 REMARK 500 PHE B 133 -65.61 75.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4USO RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE CCL2 LECTIN IN COMPLEX WITH SIALYL LEWIS X REMARK 900 RELATED ID: 4UT5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA REMARK 900 STRAIN PA7 IN COMPLEX WITH LEWIS A TETRASACCHARIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FIRST 12 AMINO ACIDS ARE FROM THE NTERMINAL HISTAG DBREF 4USP A 2 142 UNP B3GA02 B3GA02_COPCI 2 142 DBREF 4USP B 2 142 UNP B3GA02 B3GA02_COPCI 2 142 SEQADV 4USP MET A -10 UNP B3GA02 EXPRESSION TAG SEQADV 4USP GLY A -9 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS A -8 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS A -7 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS A -6 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS A -5 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS A -4 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS A -3 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS A -2 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS A -1 UNP B3GA02 EXPRESSION TAG SEQADV 4USP SER A 0 UNP B3GA02 EXPRESSION TAG SEQADV 4USP GLY A 1 UNP B3GA02 EXPRESSION TAG SEQADV 4USP MET B -10 UNP B3GA02 EXPRESSION TAG SEQADV 4USP GLY B -9 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS B -8 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS B -7 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS B -6 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS B -5 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS B -4 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS B -3 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS B -2 UNP B3GA02 EXPRESSION TAG SEQADV 4USP HIS B -1 UNP B3GA02 EXPRESSION TAG SEQADV 4USP SER B 0 UNP B3GA02 EXPRESSION TAG SEQADV 4USP GLY B 1 UNP B3GA02 EXPRESSION TAG SEQRES 1 A 153 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS SER GLY ASP SEQRES 2 A 153 SER PRO ALA VAL THR LEU SER ALA GLY ASN TYR ILE ILE SEQRES 3 A 153 TYR ASN ARG VAL LEU SER PRO ARG GLY GLU LYS LEU ALA SEQRES 4 A 153 LEU THR TYR PRO GLY ARG GLN ARG THR PRO VAL THR VAL SEQRES 5 A 153 SER PRO LEU ASP GLY SER SER GLU GLN ALA TRP ILE LEU SEQRES 6 A 153 ARG SER TYR ASP SER ASN SER ASN THR TRP THR ILE SER SEQRES 7 A 153 PRO VAL GLY SER PRO ASN SER GLN ILE GLY TRP GLY ALA SEQRES 8 A 153 GLY ASN VAL PRO VAL VAL LEU PRO PRO ASN ASN TYR VAL SEQRES 9 A 153 TRP THR LEU THR LEU THR SER GLY GLY TYR ASN ILE GLN SEQRES 10 A 153 ASP GLY LYS ARG THR VAL SER TRP SER LEU ASN ASN ALA SEQRES 11 A 153 THR ALA GLY GLU GLU VAL SER ILE GLY ALA ASP ALA THR SEQRES 12 A 153 PHE SER GLY ARG TRP VAL ILE GLU LYS VAL SEQRES 1 B 153 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS SER GLY ASP SEQRES 2 B 153 SER PRO ALA VAL THR LEU SER ALA GLY ASN TYR ILE ILE SEQRES 3 B 153 TYR ASN ARG VAL LEU SER PRO ARG GLY GLU LYS LEU ALA SEQRES 4 B 153 LEU THR TYR PRO GLY ARG GLN ARG THR PRO VAL THR VAL SEQRES 5 B 153 SER PRO LEU ASP GLY SER SER GLU GLN ALA TRP ILE LEU SEQRES 6 B 153 ARG SER TYR ASP SER ASN SER ASN THR TRP THR ILE SER SEQRES 7 B 153 PRO VAL GLY SER PRO ASN SER GLN ILE GLY TRP GLY ALA SEQRES 8 B 153 GLY ASN VAL PRO VAL VAL LEU PRO PRO ASN ASN TYR VAL SEQRES 9 B 153 TRP THR LEU THR LEU THR SER GLY GLY TYR ASN ILE GLN SEQRES 10 B 153 ASP GLY LYS ARG THR VAL SER TRP SER LEU ASN ASN ALA SEQRES 11 B 153 THR ALA GLY GLU GLU VAL SER ILE GLY ALA ASP ALA THR SEQRES 12 B 153 PHE SER GLY ARG TRP VAL ILE GLU LYS VAL HET CL A 201 1 HET PO4 B 200 5 HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION FORMUL 3 CL CL 1- FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *195(H2 O) HELIX 1 1 SER A 47 GLN A 50 5 4 HELIX 2 2 SER B 47 GLN B 50 5 4 HELIX 3 3 SER B 59 SER B 61 5 3 SHEET 1 AA 7 GLY A 11 ASN A 17 0 SHEET 2 AA 7 TRP A 52 ASP A 58 -1 O TRP A 52 N TYR A 13 SHEET 3 AA 7 THR A 63 PRO A 68 -1 O THR A 63 N TYR A 57 SHEET 4 AA 7 TRP A 94 THR A 99 -1 O TRP A 94 N TRP A 64 SHEET 5 AA 7 GLY A 102 ASP A 107 -1 O GLY A 102 N THR A 99 SHEET 6 AA 7 TRP A 137 LYS A 141 -1 O TRP A 137 N TYR A 103 SHEET 7 AA 7 GLY A 11 ASN A 17 -1 O ILE A 14 N GLU A 140 SHEET 1 AB 2 LEU A 27 THR A 30 0 SHEET 2 AB 2 THR A 40 PRO A 43 -1 O THR A 40 N THR A 30 SHEET 1 AC 2 GLN A 75 GLY A 79 0 SHEET 2 AC 2 VAL A 83 LEU A 87 -1 O VAL A 83 N GLY A 79 SHEET 1 AD 2 SER A 113 SER A 115 0 SHEET 2 AD 2 SER A 126 GLY A 128 -1 O SER A 126 N SER A 115 SHEET 1 BA 7 GLY B 11 ASN B 17 0 SHEET 2 BA 7 TRP B 52 ASP B 58 -1 O TRP B 52 N TYR B 13 SHEET 3 BA 7 THR B 63 PRO B 68 -1 O THR B 63 N TYR B 57 SHEET 4 BA 7 TRP B 94 THR B 99 -1 O TRP B 94 N TRP B 64 SHEET 5 BA 7 GLY B 102 ASP B 107 -1 O GLY B 102 N THR B 99 SHEET 6 BA 7 TRP B 137 LYS B 141 -1 O TRP B 137 N TYR B 103 SHEET 7 BA 7 GLY B 11 ASN B 17 -1 O ILE B 14 N GLU B 140 SHEET 1 BB 2 LEU B 27 THR B 30 0 SHEET 2 BB 2 THR B 40 PRO B 43 -1 O THR B 40 N THR B 30 SHEET 1 BC 2 GLN B 75 GLY B 79 0 SHEET 2 BC 2 VAL B 83 LEU B 87 -1 O VAL B 83 N GLY B 79 SHEET 1 BD 2 SER B 113 SER B 115 0 SHEET 2 BD 2 SER B 126 GLY B 128 -1 O SER B 126 N SER B 115 SITE 1 AC1 3 ARG A 36 HOH A2071 ARG B 36 SITE 1 AC2 3 TRP A 78 HOH A3073 TRP B 78 CRYST1 59.921 59.921 202.907 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016689 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004928 0.00000 MTRIX1 1 0.428410 -0.903580 0.001480 17.24904 1 MTRIX2 1 -0.903470 -0.428380 -0.015390 28.22673 1 MTRIX3 1 0.014540 0.005260 -0.999880 105.69557 1