HEADER OXIDOREDUCTASE 11-JUL-14 4USQ TITLE STRUCTURE OF FLAVIN-CONTAINING MONOOXYGENASE FROM CELLVIBRIO SP. BR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE; COMPND 3 CHAIN: A, F; COMPND 4 SYNONYM: FLAVIN-CONTAINING MONOOXYGENASE; COMPND 5 EC: 1.14.13.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO SP. BR; SOURCE 3 ORGANISM_TAXID: 1134474; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PETYSBLIC-3C; SOURCE 8 OTHER_DETAILS: TARGET INDENTIFIED USING BLAST SEARCH (SYNTHETIC SOURCE 9 GENE) KEYWDS FLAVIN, FAD, NAD(P)H, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.N.JENSEN,S.T.ALI,M.J.ALLEN,G.GROGAN REVDAT 3 10-JAN-24 4USQ 1 REMARK REVDAT 2 19-NOV-14 4USQ 1 JRNL REVDAT 1 01-OCT-14 4USQ 0 JRNL AUTH C.N.JENSEN,S.T.ALI,M.J.ALLEN,G.GROGAN JRNL TITL EXPLORING NICOTINAMIDE COFACTOR PROMISCUITY IN JRNL TITL 2 NAD(P)H-DEPENDENT FLAVIN CONTAINING MONOOXYGENASES (FMOS) JRNL TITL 3 USING NATURAL VARIATION WITHIN THE PHOSPHATE BINDING LOOP. JRNL TITL 4 STRUCTURE AND ACTIVITY OF FMOS FROM CELLVIBRIO SP. BR AND JRNL TITL 5 PSEUDOMONAS STUTZERI NF13 JRNL REF J.MOL.CATAL. V. 109 191 2014 JRNL REFN ISSN 1381-1177 JRNL PMID 25383040 JRNL DOI 10.1016/J.MOLCATB.2014.08.019 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 29763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1578 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2185 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5048 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.97000 REMARK 3 B22 (A**2) : -2.86000 REMARK 3 B33 (A**2) : -1.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.458 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.293 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.264 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.485 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.910 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5308 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4781 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7298 ; 1.662 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10897 ; 0.943 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 671 ; 7.120 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;35.862 ;22.664 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 690 ;15.023 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;16.514 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 810 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6090 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1273 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2696 ; 2.671 ; 3.791 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2695 ; 2.670 ; 3.789 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3363 ; 3.978 ; 5.679 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2612 ; 2.746 ; 3.887 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4USQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1290061214. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96862 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31344 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 22.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4A9W REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE AND 1% REMARK 280 (W/V)PROPAN-2-OL PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.70500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.70500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 465 VAL A 5 REMARK 465 MET A 6 REMARK 465 ASP A 7 REMARK 465 SER A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 THR A 11 REMARK 465 ASP A 12 REMARK 465 ALA A 228 REMARK 465 GLN A 229 REMARK 465 GLU A 230 REMARK 465 GLY A 231 REMARK 465 ARG A 232 REMARK 465 GLU A 233 REMARK 465 ILE A 234 REMARK 465 GLU A 235 REMARK 465 GLN A 236 REMARK 465 PRO A 237 REMARK 465 VAL A 238 REMARK 465 GLY A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 GLY A 242 REMARK 465 ALA A 361 REMARK 465 MET F 1 REMARK 465 ASP F 2 REMARK 465 THR F 3 REMARK 465 PRO F 4 REMARK 465 VAL F 5 REMARK 465 MET F 6 REMARK 465 ASP F 7 REMARK 465 SER F 8 REMARK 465 THR F 9 REMARK 465 ASP F 10 REMARK 465 THR F 11 REMARK 465 ASP F 12 REMARK 465 PRO F 237 REMARK 465 VAL F 238 REMARK 465 GLY F 239 REMARK 465 GLY F 240 REMARK 465 LEU F 241 REMARK 465 GLY F 242 REMARK 465 SER F 360 REMARK 465 ALA F 361 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 ARG A 125 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 126 CG CD OE1 NE2 REMARK 470 ARG A 129 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 224 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 225 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 225 CZ3 CH2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 HIS A 260 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 308 CG OD1 OD2 REMARK 470 ARG A 345 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 356 CG CD OE1 NE2 REMARK 470 SER A 360 OG REMARK 470 LYS F 36 CG CD CE NZ REMARK 470 GLU F 80 CG CD OE1 OE2 REMARK 470 GLU F 124 CG CD OE1 OE2 REMARK 470 ARG F 125 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 129 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 193 CG CD NE CZ NH1 NH2 REMARK 470 ASP F 210 CG OD1 OD2 REMARK 470 ARG F 224 CG CD NE CZ NH1 NH2 REMARK 470 TRP F 225 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP F 225 CZ3 CH2 REMARK 470 LYS F 226 CG CD CE NZ REMARK 470 GLN F 229 CG CD OE1 NE2 REMARK 470 GLU F 230 CG CD OE1 OE2 REMARK 470 ARG F 232 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 233 CG CD OE1 OE2 REMARK 470 ILE F 234 CG1 CG2 CD1 REMARK 470 GLU F 235 CG CD OE1 OE2 REMARK 470 GLN F 236 CG CD OE1 NE2 REMARK 470 LYS F 251 CG CD CE NZ REMARK 470 GLU F 252 CG CD OE1 OE2 REMARK 470 ARG F 345 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 348 CG CD NE CZ NH1 NH2 REMARK 470 GLN F 356 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 348 OE2 GLU A 352 2.16 REMARK 500 OH TYR A 37 OD1 ASP A 359 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG F 141 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 68 37.24 -148.11 REMARK 500 ALA A 162 -39.13 -38.01 REMARK 500 GLN A 165 -57.84 -122.77 REMARK 500 CYS A 289 47.04 -99.31 REMARK 500 ALA A 338 47.98 -94.18 REMARK 500 SER F 68 36.51 -149.35 REMARK 500 GLU F 80 -70.14 31.19 REMARK 500 THR F 81 161.20 178.29 REMARK 500 TYR F 82 110.53 51.73 REMARK 500 ALA F 162 -37.91 -38.80 REMARK 500 ILE F 234 -69.39 -132.25 REMARK 500 GLU F 235 163.21 139.55 REMARK 500 MET F 246 58.57 -90.84 REMARK 500 CYS F 289 47.21 -99.39 REMARK 500 ALA F 338 47.86 -94.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3021 DISTANCE = 6.26 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD F 1360 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4USR RELATED DB: PDB REMARK 900 STRUCTURE OF FLAVIN-CONTAINING MONOOXYGENASE FROM PSEUDOMONAS REMARK 900 STUTZERI NF13 DBREF 4USQ A 1 361 UNP I3IEE4 I3IEE4_9GAMM 1 361 DBREF 4USQ F 1 361 UNP I3IEE4 I3IEE4_9GAMM 1 361 SEQRES 1 A 361 MET ASP THR PRO VAL MET ASP SER THR ASP THR ASP SER SEQRES 2 A 361 THR ASP ILE VAL ILE ILE GLY GLY GLY GLN ALA ALA LEU SEQRES 3 A 361 SER VAL ALA TYR TYR LEU ARG ARG SER LYS TYR SER PHE SEQRES 4 A 361 VAL MET LEU ASP ALA GLU GLN THR PRO GLY GLY ALA TRP SEQRES 5 A 361 LEU HIS GLY TRP ASP SER LEU ARG LEU PHE SER PRO SER SEQRES 6 A 361 THR TRP SER SER LEU SER GLY TRP GLN MET PRO PRO THR SEQRES 7 A 361 GLY GLU THR TYR PRO SER ARG ASP GLN VAL VAL ASP TYR SEQRES 8 A 361 LEU ARG HIS TYR GLU SER ARG TYR GLU PHE PRO VAL GLN SEQRES 9 A 361 ARG PRO VAL TRP VAL SER ALA VAL ASN ASN LEU GLY ASP SEQRES 10 A 361 ARG LEU GLU VAL VAL SER GLU ARG GLN GLN TRP ARG ALA SEQRES 11 A 361 ARG VAL VAL ILE SER ALA THR GLY THR TRP ARG ASN PRO SEQRES 12 A 361 PHE ILE PRO ALA TYR PRO GLY ALA ASP LEU PHE GLN GLY SEQRES 13 A 361 ALA GLN LEU HIS SER ALA HIS TYR GLN SER PRO ALA PRO SEQRES 14 A 361 PHE ALA GLY GLN LYS VAL LEU VAL VAL GLY GLY GLY ASN SEQRES 15 A 361 SER GLY ALA GLN ILE LEU ALA GLU VAL SER ARG VAL ALA SEQRES 16 A 361 ASP CYS THR TRP VAL THR THR SER GLU PRO ILE PHE LEU SEQRES 17 A 361 PRO ASP ASP VAL ASP GLY ARG VAL LEU PHE GLN ARG ALA SEQRES 18 A 361 THR ASP ARG TRP LYS ALA ALA GLN GLU GLY ARG GLU ILE SEQRES 19 A 361 GLU GLN PRO VAL GLY GLY LEU GLY ASP VAL VAL MET VAL SEQRES 20 A 361 PRO PRO VAL LYS GLU ALA ARG GLU ARG GLY ALA LEU HIS SEQRES 21 A 361 ALA VAL ARG PRO PHE THR ARG PHE THR ALA ASN GLY VAL SEQRES 22 A 361 VAL TRP ALA ASP GLY THR GLY SER ALA VAL ASP ALA VAL SEQRES 23 A 361 ILE TRP CYS THR GLY PHE ARG PRO ALA LEU ALA HIS LEU SEQRES 24 A 361 GLN SER LEU GLY VAL ILE ASN PRO ASP GLY LYS VAL ASP SEQRES 25 A 361 LEU ALA GLY THR ARG SER LEU GLN GLU PRO ARG LEU TRP SEQRES 26 A 361 LEU LEU GLY TYR GLY GLU TRP THR GLY LEU ALA SER ALA SEQRES 27 A 361 THR LEU ILE GLY VAL GLY ARG SER ALA ARG ALA THR ALA SEQRES 28 A 361 GLU GLU ILE ILE GLN TYR LEU ASP SER ALA SEQRES 1 F 361 MET ASP THR PRO VAL MET ASP SER THR ASP THR ASP SER SEQRES 2 F 361 THR ASP ILE VAL ILE ILE GLY GLY GLY GLN ALA ALA LEU SEQRES 3 F 361 SER VAL ALA TYR TYR LEU ARG ARG SER LYS TYR SER PHE SEQRES 4 F 361 VAL MET LEU ASP ALA GLU GLN THR PRO GLY GLY ALA TRP SEQRES 5 F 361 LEU HIS GLY TRP ASP SER LEU ARG LEU PHE SER PRO SER SEQRES 6 F 361 THR TRP SER SER LEU SER GLY TRP GLN MET PRO PRO THR SEQRES 7 F 361 GLY GLU THR TYR PRO SER ARG ASP GLN VAL VAL ASP TYR SEQRES 8 F 361 LEU ARG HIS TYR GLU SER ARG TYR GLU PHE PRO VAL GLN SEQRES 9 F 361 ARG PRO VAL TRP VAL SER ALA VAL ASN ASN LEU GLY ASP SEQRES 10 F 361 ARG LEU GLU VAL VAL SER GLU ARG GLN GLN TRP ARG ALA SEQRES 11 F 361 ARG VAL VAL ILE SER ALA THR GLY THR TRP ARG ASN PRO SEQRES 12 F 361 PHE ILE PRO ALA TYR PRO GLY ALA ASP LEU PHE GLN GLY SEQRES 13 F 361 ALA GLN LEU HIS SER ALA HIS TYR GLN SER PRO ALA PRO SEQRES 14 F 361 PHE ALA GLY GLN LYS VAL LEU VAL VAL GLY GLY GLY ASN SEQRES 15 F 361 SER GLY ALA GLN ILE LEU ALA GLU VAL SER ARG VAL ALA SEQRES 16 F 361 ASP CYS THR TRP VAL THR THR SER GLU PRO ILE PHE LEU SEQRES 17 F 361 PRO ASP ASP VAL ASP GLY ARG VAL LEU PHE GLN ARG ALA SEQRES 18 F 361 THR ASP ARG TRP LYS ALA ALA GLN GLU GLY ARG GLU ILE SEQRES 19 F 361 GLU GLN PRO VAL GLY GLY LEU GLY ASP VAL VAL MET VAL SEQRES 20 F 361 PRO PRO VAL LYS GLU ALA ARG GLU ARG GLY ALA LEU HIS SEQRES 21 F 361 ALA VAL ARG PRO PHE THR ARG PHE THR ALA ASN GLY VAL SEQRES 22 F 361 VAL TRP ALA ASP GLY THR GLY SER ALA VAL ASP ALA VAL SEQRES 23 F 361 ILE TRP CYS THR GLY PHE ARG PRO ALA LEU ALA HIS LEU SEQRES 24 F 361 GLN SER LEU GLY VAL ILE ASN PRO ASP GLY LYS VAL ASP SEQRES 25 F 361 LEU ALA GLY THR ARG SER LEU GLN GLU PRO ARG LEU TRP SEQRES 26 F 361 LEU LEU GLY TYR GLY GLU TRP THR GLY LEU ALA SER ALA SEQRES 27 F 361 THR LEU ILE GLY VAL GLY ARG SER ALA ARG ALA THR ALA SEQRES 28 F 361 GLU GLU ILE ILE GLN TYR LEU ASP SER ALA HET FAD A1361 53 HET FAD F1360 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *41(H2 O) HELIX 1 1 GLY A 22 ARG A 33 1 12 HELIX 2 2 GLY A 49 GLY A 55 5 7 HELIX 3 3 PRO A 64 SER A 68 5 5 HELIX 4 4 SER A 84 TYR A 99 1 16 HELIX 5 5 ALA A 162 TYR A 164 5 3 HELIX 6 6 PRO A 167 ALA A 171 5 5 HELIX 7 7 GLY A 180 SER A 192 1 13 HELIX 8 8 GLY A 214 ALA A 227 1 14 HELIX 9 9 VAL A 247 ARG A 256 1 10 HELIX 10 10 LEU A 296 GLY A 303 5 8 HELIX 11 11 GLY A 330 GLY A 334 5 5 HELIX 12 12 VAL A 343 SER A 360 1 18 HELIX 13 13 GLY F 22 ARG F 33 1 12 HELIX 14 14 GLY F 49 GLY F 55 5 7 HELIX 15 15 PRO F 64 SER F 68 5 5 HELIX 16 16 SER F 84 TYR F 99 1 16 HELIX 17 17 ALA F 162 TYR F 164 5 3 HELIX 18 18 PRO F 167 ALA F 171 5 5 HELIX 19 19 GLY F 180 SER F 192 1 13 HELIX 20 20 GLY F 214 GLY F 231 1 18 HELIX 21 21 VAL F 247 ARG F 256 1 10 HELIX 22 22 LEU F 296 GLY F 303 5 8 HELIX 23 23 GLY F 330 GLY F 334 5 5 HELIX 24 24 GLY F 342 ASP F 359 1 18 SHEET 1 AA 5 VAL A 103 GLN A 104 0 SHEET 2 AA 5 PHE A 39 LEU A 42 1 O MET A 41 N GLN A 104 SHEET 3 AA 5 THR A 14 ILE A 19 1 O ILE A 16 N VAL A 40 SHEET 4 AA 5 GLN A 127 SER A 135 1 O ARG A 129 N THR A 14 SHEET 5 AA 5 LEU A 324 LEU A 326 -1 O TRP A 325 N SER A 135 SHEET 1 AB 6 VAL A 103 GLN A 104 0 SHEET 2 AB 6 PHE A 39 LEU A 42 1 O MET A 41 N GLN A 104 SHEET 3 AB 6 THR A 14 ILE A 19 1 O ILE A 16 N VAL A 40 SHEET 4 AB 6 GLN A 127 SER A 135 1 O ARG A 129 N THR A 14 SHEET 5 AB 6 LEU A 119 VAL A 122 -1 O LEU A 119 N ALA A 130 SHEET 6 AB 6 ALA A 111 ASN A 114 -1 O ALA A 111 N VAL A 122 SHEET 1 AC 2 LEU A 324 LEU A 326 0 SHEET 2 AC 2 GLN A 127 SER A 135 -1 O VAL A 133 N TRP A 325 SHEET 1 AD 5 ALA A 157 HIS A 160 0 SHEET 2 AD 5 ALA A 285 TRP A 288 1 O VAL A 286 N LEU A 159 SHEET 3 AD 5 LYS A 174 VAL A 178 1 O LEU A 176 N ILE A 287 SHEET 4 AD 5 ASP A 196 VAL A 200 1 O ASP A 196 N VAL A 175 SHEET 5 AD 5 ALA A 261 VAL A 262 1 N VAL A 262 O TRP A 199 SHEET 1 AE 3 ARG A 267 THR A 269 0 SHEET 2 AE 3 GLY A 272 VAL A 274 -1 O GLY A 272 N THR A 269 SHEET 3 AE 3 GLY A 280 ALA A 282 -1 O SER A 281 N VAL A 273 SHEET 1 AF 2 LEU A 313 ALA A 314 0 SHEET 2 AF 2 ARG A 317 SER A 318 -1 O ARG A 317 N ALA A 314 SHEET 1 FA 5 VAL F 103 GLN F 104 0 SHEET 2 FA 5 PHE F 39 LEU F 42 1 O MET F 41 N GLN F 104 SHEET 3 FA 5 THR F 14 ILE F 19 1 O ILE F 16 N VAL F 40 SHEET 4 FA 5 GLN F 127 SER F 135 1 O ARG F 129 N THR F 14 SHEET 5 FA 5 LEU F 324 LEU F 326 -1 O TRP F 325 N SER F 135 SHEET 1 FB 6 VAL F 103 GLN F 104 0 SHEET 2 FB 6 PHE F 39 LEU F 42 1 O MET F 41 N GLN F 104 SHEET 3 FB 6 THR F 14 ILE F 19 1 O ILE F 16 N VAL F 40 SHEET 4 FB 6 GLN F 127 SER F 135 1 O ARG F 129 N THR F 14 SHEET 5 FB 6 LEU F 119 VAL F 122 -1 O LEU F 119 N ALA F 130 SHEET 6 FB 6 ALA F 111 ASN F 114 -1 O ALA F 111 N VAL F 122 SHEET 1 FC 2 LEU F 324 LEU F 326 0 SHEET 2 FC 2 GLN F 127 SER F 135 -1 O VAL F 133 N TRP F 325 SHEET 1 FD 5 ALA F 157 HIS F 160 0 SHEET 2 FD 5 ALA F 285 TRP F 288 1 O VAL F 286 N LEU F 159 SHEET 3 FD 5 LYS F 174 VAL F 178 1 O LEU F 176 N ILE F 287 SHEET 4 FD 5 ASP F 196 VAL F 200 1 O ASP F 196 N VAL F 175 SHEET 5 FD 5 ALA F 261 VAL F 262 1 N VAL F 262 O TRP F 199 SHEET 1 FE 3 ARG F 267 THR F 269 0 SHEET 2 FE 3 GLY F 272 VAL F 274 -1 O GLY F 272 N THR F 269 SHEET 3 FE 3 GLY F 280 ALA F 282 -1 O SER F 281 N VAL F 273 SHEET 1 FF 2 LEU F 313 ALA F 314 0 SHEET 2 FF 2 ARG F 317 SER F 318 -1 O ARG F 317 N ALA F 314 CISPEP 1 ARG A 105 PRO A 106 0 -10.82 CISPEP 2 ARG F 105 PRO F 106 0 -9.47 SITE 1 AC1 31 GLY A 20 GLY A 21 GLY A 22 GLN A 23 SITE 2 AC1 31 ALA A 24 ASP A 43 ALA A 44 GLU A 45 SITE 3 AC1 31 GLY A 50 ALA A 51 TRP A 52 TRP A 56 SITE 4 AC1 31 LEU A 61 PHE A 62 VAL A 107 TRP A 108 SITE 5 AC1 31 VAL A 109 ALA A 136 THR A 137 GLY A 138 SITE 6 AC1 31 ARG A 141 SER A 183 GLY A 328 ALA A 338 SITE 7 AC1 31 THR A 339 LEU A 340 HOH A2001 HOH A2002 SITE 8 AC1 31 HOH A2003 HOH A2004 HOH A2010 SITE 1 AC2 30 GLY F 20 GLY F 21 GLY F 22 GLN F 23 SITE 2 AC2 30 ALA F 24 ASP F 43 ALA F 44 GLU F 45 SITE 3 AC2 30 GLY F 50 ALA F 51 TRP F 52 TRP F 56 SITE 4 AC2 30 LEU F 61 PHE F 62 VAL F 107 TRP F 108 SITE 5 AC2 30 VAL F 109 ALA F 136 THR F 137 GLY F 138 SITE 6 AC2 30 ARG F 141 SER F 183 GLY F 328 ALA F 338 SITE 7 AC2 30 THR F 339 LEU F 340 HOH F2001 HOH F2002 SITE 8 AC2 30 HOH F2003 HOH F2012 CRYST1 115.410 95.090 92.370 90.00 126.26 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008665 0.000000 0.006356 0.00000 SCALE2 0.000000 0.010516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013426 0.00000 MTRIX1 1 0.289100 0.006681 0.957300 -6.99700 1 MTRIX2 1 0.003545 -1.000000 0.005909 13.12000 1 MTRIX3 1 0.957300 0.001685 -0.289100 9.55000 1