HEADER TRANSFERASE 21-JUL-14 4UTG TITLE BURKHOLDERIA PSEUDOMALLEI HEPTOKINASE WCBL,AMPPNP (ATP ANALOGUE) TITLE 2 COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: WCBL, D-GLYCERO-BETA-D-MANNO-HEPTOSE-7-PHOSPHATE KINASE; COMPND 5 EC: 2.7.1.167; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI K96243; SOURCE 3 ORGANISM_TAXID: 272560; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PNIC28-BSA4 KEYWDS TRANSFERASE, CAPSULAR POLYSACCHARIDE, DRUG DISCOVERY, HEPTOPYRANOSE EXPDTA X-RAY DIFFRACTION AUTHOR M.VIVOLI,M.N.ISUPOV,R.NICHOLAS,A.HILL,A.SCOTT,P.KOSMA,J.PRIOR, AUTHOR 2 N.J.HARMER REVDAT 3 08-MAY-24 4UTG 1 REMARK LINK REVDAT 2 28-JUN-17 4UTG 1 REMARK REVDAT 1 13-JAN-16 4UTG 0 JRNL AUTH M.VIVOLI,M.N.ISUPOV,R.NICHOLAS,A.HILL,A.E.SCOTT,P.KOSMA, JRNL AUTH 2 J.L.PRIOR,N.J.HARMER JRNL TITL UNRAVELING THE B.PSEUDOMALLEI HEPTOKINASE WCBL: FROM JRNL TITL 2 STRUCTURE TO DRUG DISCOVERY. JRNL REF CHEM.BIOL. V. 22 1622 2015 JRNL REFN ISSN 1074-5521 JRNL PMID 26687481 JRNL DOI 10.1016/J.CHEMBIOL.2015.10.015 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 68961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3690 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4884 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 264 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 606 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : -1.62000 REMARK 3 B33 (A**2) : 1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.098 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6197 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8565 ; 1.323 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 888 ; 5.053 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 292 ;33.022 ;23.356 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1119 ;14.688 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;16.522 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 974 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4806 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2990 ; 4.311 ; 7.673 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3794 ; 5.306 ;12.853 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3206 ; 5.370 ; 8.773 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4UTG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1290061286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72694 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 76.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, ARP/WARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M NACL, 10 MM HEPES PH 7, 25 MM REMARK 280 AMPPNP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.39000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.39000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.72000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.51000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.72000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.51000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.39000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.72000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.51000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.39000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.72000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.51000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 83.39000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 83.39000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2134 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2234 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2259 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2261 O HOH B 2262 2.07 REMARK 500 O HOH A 2185 O HOH A 2186 2.17 REMARK 500 O HOH A 2321 O HOH A 2324 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2135 O HOH A 2135 3555 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 40 15.02 -69.13 REMARK 500 PRO A 137 50.00 -85.49 REMARK 500 VAL A 153 -66.17 -97.22 REMARK 500 ASP B 40 32.33 -91.17 REMARK 500 LEU B 69 92.52 -61.21 REMARK 500 PRO B 137 48.65 -88.89 REMARK 500 VAL B 153 -68.05 -98.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 400 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 114 OG REMARK 620 2 SER A 118 OG 86.6 REMARK 620 3 ANP A 399 O1B 136.2 107.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 400 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 114 OG REMARK 620 2 ANP B 399 O2B 136.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1347 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1347 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UT4 RELATED DB: PDB REMARK 900 BURKHOLDERIA PSEUDOMALLEI HEPTOKINASE WCBL, D-MANNOSE COMPLEX. DBREF 4UTG A 1 346 UNP H7C745 H7C745_BURPS 1 346 DBREF 4UTG B 1 346 UNP H7C745 H7C745_BURPS 1 346 SEQADV 4UTG ALA A 179 UNP H7C745 GLU 179 ENGINEERED MUTATION SEQADV 4UTG ALA A 180 UNP H7C745 GLU 180 ENGINEERED MUTATION SEQADV 4UTG ALA A 181 UNP H7C745 GLU 181 ENGINEERED MUTATION SEQADV 4UTG ALA B 179 UNP H7C745 GLU 179 ENGINEERED MUTATION SEQADV 4UTG ALA B 180 UNP H7C745 GLU 180 ENGINEERED MUTATION SEQADV 4UTG ALA B 181 UNP H7C745 GLU 181 ENGINEERED MUTATION SEQRES 1 A 346 MET ASN PRO THR ILE ILE ARG ALA ARG ALA PRO LEU ARG SEQRES 2 A 346 LEU GLY LEU ALA GLY GLY GLY THR ASP VAL ALA PRO TYR SEQRES 3 A 346 ALA ASP THR PHE GLY GLY TYR VAL LEU ASN ALA THR ILE SEQRES 4 A 346 ASP ARG TYR ALA TYR ALA VAL ILE LYS THR LEU THR ILE SEQRES 5 A 346 PRO ALA VAL ARG PHE VAL SER THR ASP GLN GLN VAL GLU SEQRES 6 A 346 LYS HIS GLN LEU ILE SER GLU PRO LEU GLU LEU ASN GLY SEQRES 7 A 346 THR LEU ASN LEU HIS LYS ALA VAL TYR ASN HIS MET ILE SEQRES 8 A 346 ARG ASN TYR ASN HIS GLY LYS PRO ILE ALA LEU GLU LEU SEQRES 9 A 346 SER THR PHE CYS ASP ALA PRO ALA GLY SER GLY LEU GLY SEQRES 10 A 346 SER SER SER THR LEU VAL VAL VAL MET ILE LYS ALA PHE SEQRES 11 A 346 VAL GLU LEU LEU ASN LEU PRO LEU ASP ASP TYR ALA ILE SEQRES 12 A 346 ALA GLN LEU ALA TYR ARG ILE GLU ARG VAL ASP CYS GLY SEQRES 13 A 346 LEU ALA GLY GLY ARG GLN ASP GLN TYR SER ALA THR PHE SEQRES 14 A 346 GLY GLY PHE ASN PHE MET GLU PHE TYR ALA ALA ALA ARG SEQRES 15 A 346 THR ILE VAL ASN PRO LEU ARG ILE LYS ASN TRP VAL LEU SEQRES 16 A 346 CYS GLU LEU GLU ALA SER LEU VAL LEU PHE TYR THR GLY SEQRES 17 A 346 VAL SER ARG GLU SER ALA LYS ILE ILE GLN ASP GLN SER SEQRES 18 A 346 ASP ASN VAL VAL SER HIS LYS THR ALA ALA ILE GLU ALA SEQRES 19 A 346 MET HIS GLY ILE LYS ARG GLU ALA LEU VAL MET LYS GLU SEQRES 20 A 346 ALA LEU LEU LYS GLY ASP PHE LYS ALA PHE VAL ALA SER SEQRES 21 A 346 MET ARG LEU GLY TRP ASP ASN LYS LYS ASN SER ALA ARG SEQRES 22 A 346 THR VAL SER ASN ALA HIS ILE ASP GLU ILE TYR ASP ALA SEQRES 23 A 346 ALA ILE ARG ALA GLY ALA GLN ALA GLY LYS VAL SER GLY SEQRES 24 A 346 ALA GLY GLY GLY GLY PHE MET LEU PHE PHE VAL PRO THR SEQRES 25 A 346 GLU LYS ARG MET ASP LEU ILE ARG THR LEU GLY GLU TYR SEQRES 26 A 346 ASP GLY GLN VAL SER ASN CYS HIS PHE THR LYS ASN GLY SEQRES 27 A 346 THR GLN ALA TRP ARG ILE ALA ASN SEQRES 1 B 346 MET ASN PRO THR ILE ILE ARG ALA ARG ALA PRO LEU ARG SEQRES 2 B 346 LEU GLY LEU ALA GLY GLY GLY THR ASP VAL ALA PRO TYR SEQRES 3 B 346 ALA ASP THR PHE GLY GLY TYR VAL LEU ASN ALA THR ILE SEQRES 4 B 346 ASP ARG TYR ALA TYR ALA VAL ILE LYS THR LEU THR ILE SEQRES 5 B 346 PRO ALA VAL ARG PHE VAL SER THR ASP GLN GLN VAL GLU SEQRES 6 B 346 LYS HIS GLN LEU ILE SER GLU PRO LEU GLU LEU ASN GLY SEQRES 7 B 346 THR LEU ASN LEU HIS LYS ALA VAL TYR ASN HIS MET ILE SEQRES 8 B 346 ARG ASN TYR ASN HIS GLY LYS PRO ILE ALA LEU GLU LEU SEQRES 9 B 346 SER THR PHE CYS ASP ALA PRO ALA GLY SER GLY LEU GLY SEQRES 10 B 346 SER SER SER THR LEU VAL VAL VAL MET ILE LYS ALA PHE SEQRES 11 B 346 VAL GLU LEU LEU ASN LEU PRO LEU ASP ASP TYR ALA ILE SEQRES 12 B 346 ALA GLN LEU ALA TYR ARG ILE GLU ARG VAL ASP CYS GLY SEQRES 13 B 346 LEU ALA GLY GLY ARG GLN ASP GLN TYR SER ALA THR PHE SEQRES 14 B 346 GLY GLY PHE ASN PHE MET GLU PHE TYR ALA ALA ALA ARG SEQRES 15 B 346 THR ILE VAL ASN PRO LEU ARG ILE LYS ASN TRP VAL LEU SEQRES 16 B 346 CYS GLU LEU GLU ALA SER LEU VAL LEU PHE TYR THR GLY SEQRES 17 B 346 VAL SER ARG GLU SER ALA LYS ILE ILE GLN ASP GLN SER SEQRES 18 B 346 ASP ASN VAL VAL SER HIS LYS THR ALA ALA ILE GLU ALA SEQRES 19 B 346 MET HIS GLY ILE LYS ARG GLU ALA LEU VAL MET LYS GLU SEQRES 20 B 346 ALA LEU LEU LYS GLY ASP PHE LYS ALA PHE VAL ALA SER SEQRES 21 B 346 MET ARG LEU GLY TRP ASP ASN LYS LYS ASN SER ALA ARG SEQRES 22 B 346 THR VAL SER ASN ALA HIS ILE ASP GLU ILE TYR ASP ALA SEQRES 23 B 346 ALA ILE ARG ALA GLY ALA GLN ALA GLY LYS VAL SER GLY SEQRES 24 B 346 ALA GLY GLY GLY GLY PHE MET LEU PHE PHE VAL PRO THR SEQRES 25 B 346 GLU LYS ARG MET ASP LEU ILE ARG THR LEU GLY GLU TYR SEQRES 26 B 346 ASP GLY GLN VAL SER ASN CYS HIS PHE THR LYS ASN GLY SEQRES 27 B 346 THR GLN ALA TRP ARG ILE ALA ASN HET ANP A 399 31 HET MG A 400 1 HET CL A 401 1 HET CL A 402 1 HET EDO A1347 4 HET ANP B 399 31 HET MG B 400 1 HET CL B 401 1 HET CL B 402 1 HET EDO B1347 4 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 MG 2(MG 2+) FORMUL 5 CL 4(CL 1-) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 13 HOH *606(H2 O) HELIX 1 1 VAL A 23 GLY A 31 1 9 HELIX 2 2 LEU A 80 ASN A 95 1 16 HELIX 3 3 GLY A 117 ASN A 135 1 19 HELIX 4 4 ASP A 139 VAL A 153 1 15 HELIX 5 5 GLN A 162 GLY A 170 1 9 HELIX 6 6 LYS A 191 SER A 201 1 11 HELIX 7 7 GLU A 212 SER A 226 1 15 HELIX 8 8 LYS A 228 GLY A 252 1 25 HELIX 9 9 ASP A 253 ALA A 272 1 20 HELIX 10 10 ASN A 277 GLY A 291 1 15 HELIX 11 11 PRO A 311 GLU A 313 5 3 HELIX 12 12 LYS A 314 GLU A 324 1 11 HELIX 13 13 VAL B 23 GLY B 31 1 9 HELIX 14 14 LEU B 80 ASN B 95 1 16 HELIX 15 15 GLY B 117 ASN B 135 1 19 HELIX 16 16 ASP B 139 VAL B 153 1 15 HELIX 17 17 GLN B 162 GLY B 170 1 9 HELIX 18 18 LYS B 191 SER B 201 1 11 HELIX 19 19 GLU B 212 SER B 226 1 15 HELIX 20 20 LYS B 228 GLY B 252 1 25 HELIX 21 21 ASP B 253 ALA B 272 1 20 HELIX 22 22 ASN B 277 GLY B 291 1 15 HELIX 23 23 PRO B 311 GLU B 313 5 3 HELIX 24 24 LYS B 314 GLY B 323 1 10 SHEET 1 AA 6 VAL A 64 GLN A 68 0 SHEET 2 AA 6 ALA A 54 VAL A 58 -1 O VAL A 55 N HIS A 67 SHEET 3 AA 6 LEU A 102 CYS A 108 1 O LEU A 102 N ARG A 56 SHEET 4 AA 6 GLY A 32 THR A 49 -1 O TYR A 44 N PHE A 107 SHEET 5 AA 6 PHE A 172 PHE A 177 1 O ASN A 173 N ASN A 36 SHEET 6 AA 6 THR A 183 PRO A 187 1 O ILE A 184 N GLU A 176 SHEET 1 AB 6 VAL A 64 GLN A 68 0 SHEET 2 AB 6 ALA A 54 VAL A 58 -1 O VAL A 55 N HIS A 67 SHEET 3 AB 6 LEU A 102 CYS A 108 1 O LEU A 102 N ARG A 56 SHEET 4 AB 6 GLY A 32 THR A 49 -1 O TYR A 44 N PHE A 107 SHEET 5 AB 6 ILE A 5 ALA A 17 -1 O ILE A 6 N ILE A 47 SHEET 6 AB 6 GLN A 340 ALA A 345 -1 O GLN A 340 N ARG A 9 SHEET 1 AC 4 ALA A 294 VAL A 297 0 SHEET 2 AC 4 PHE A 305 PHE A 309 -1 O LEU A 307 N LYS A 296 SHEET 3 AC 4 LEU A 202 TYR A 206 -1 O VAL A 203 N PHE A 308 SHEET 4 AC 4 GLN A 328 ASN A 331 -1 O GLN A 328 N TYR A 206 SHEET 1 BA 6 VAL B 64 GLN B 68 0 SHEET 2 BA 6 ALA B 54 VAL B 58 -1 O VAL B 55 N HIS B 67 SHEET 3 BA 6 LEU B 102 CYS B 108 1 O LEU B 102 N ARG B 56 SHEET 4 BA 6 GLY B 32 THR B 49 -1 O TYR B 44 N PHE B 107 SHEET 5 BA 6 PHE B 172 PHE B 177 1 O ASN B 173 N ASN B 36 SHEET 6 BA 6 THR B 183 PRO B 187 1 O ILE B 184 N GLU B 176 SHEET 1 BB 6 VAL B 64 GLN B 68 0 SHEET 2 BB 6 ALA B 54 VAL B 58 -1 O VAL B 55 N HIS B 67 SHEET 3 BB 6 LEU B 102 CYS B 108 1 O LEU B 102 N ARG B 56 SHEET 4 BB 6 GLY B 32 THR B 49 -1 O TYR B 44 N PHE B 107 SHEET 5 BB 6 ILE B 5 ALA B 17 -1 O ILE B 6 N ILE B 47 SHEET 6 BB 6 GLN B 340 ALA B 345 -1 O GLN B 340 N ARG B 9 SHEET 1 BC 4 ALA B 294 VAL B 297 0 SHEET 2 BC 4 PHE B 305 PHE B 309 -1 O LEU B 307 N LYS B 296 SHEET 3 BC 4 LEU B 202 TYR B 206 -1 O VAL B 203 N PHE B 308 SHEET 4 BC 4 GLN B 328 ASN B 331 -1 O GLN B 328 N TYR B 206 LINK OG BSER A 114 MG MG A 400 1555 1555 2.46 LINK OG BSER A 118 MG MG A 400 1555 1555 2.66 LINK O1B ANP A 399 MG MG A 400 1555 1555 2.07 LINK OG BSER B 114 MG MG B 400 1555 1555 2.60 LINK O2B ANP B 399 MG MG B 400 1555 1555 2.17 SITE 1 AC1 21 ARG A 13 GLY A 113 GLY A 115 LEU A 116 SITE 2 AC1 21 GLY A 117 SER A 118 SER A 119 GLU A 151 SITE 3 AC1 21 ARG A 152 ALA A 158 SER A 213 ALA A 214 SITE 4 AC1 21 ALA A 300 MG A 400 HOH A2137 HOH A2171 SITE 5 AC1 21 HOH A2208 HOH A2213 HOH A2214 HOH A2333 SITE 6 AC1 21 HOH A2334 SITE 1 AC2 7 PRO A 111 SER A 114 GLY A 115 LEU A 116 SITE 2 AC2 7 GLY A 117 SER A 118 ANP A 399 SITE 1 AC3 6 ALA A 17 GLY A 18 GLY A 19 LYS A 296 SITE 2 AC3 6 CL A 402 HOH A2016 SITE 1 AC4 5 GLN A 162 SER A 298 GLY A 299 CL A 401 SITE 2 AC4 5 HOH A2274 SITE 1 AC5 19 ARG B 13 GLY B 113 SER B 114 GLY B 115 SITE 2 AC5 19 LEU B 116 GLY B 117 SER B 118 SER B 119 SITE 3 AC5 19 GLU B 151 ARG B 152 ALA B 158 SER B 213 SITE 4 AC5 19 ALA B 214 ALA B 300 MG B 400 HOH B2112 SITE 5 AC5 19 HOH B2114 HOH B2170 HOH B2271 SITE 1 AC6 7 PRO B 111 SER B 114 GLY B 115 LEU B 116 SITE 2 AC6 7 GLY B 117 SER B 118 ANP B 399 SITE 1 AC7 5 ALA B 17 GLY B 19 LYS B 296 CL B 402 SITE 2 AC7 5 HOH B2013 SITE 1 AC8 3 GLN B 162 SER B 298 CL B 401 SITE 1 AC9 7 GLN B 145 TYR B 148 ARG B 161 TYR B 165 SITE 2 AC9 7 ALA B 181 THR B 183 HOH B2140 SITE 1 BC1 7 GLN A 145 TYR A 148 ARG A 161 TYR A 165 SITE 2 BC1 7 ALA A 181 THR A 183 HOH A2174 CRYST1 101.440 115.020 166.780 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009858 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005996 0.00000 MTRIX1 1 -1.000000 -0.000460 -0.000250 0.01678 1 MTRIX2 1 0.000460 -1.000000 -0.003120 -39.74981 1 MTRIX3 1 -0.000250 -0.003120 1.000000 -0.05549 1