HEADER PROTEIN TRANSPORT 22-JUL-14 4UTQ TITLE A STRUCTURAL MODEL OF THE ACTIVE RIBOSOME-BOUND MEMBRANE PROTEIN TITLE 2 INSERTASE YIDC COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE PROTEIN INSERTASE YIDC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FOLDASE YIDC, INNER MEMBRANE PROTEIN YIDC, MEMBRANE COMPND 5 INTEGRASE YIDC, OXA1EC; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ATP SYNTHASE SUBUNIT C; COMPND 8 CHAIN: Z; COMPND 9 FRAGMENT: MEMBRANE DOMAIN; COMPND 10 SYNONYM: ATP SYNTHASE F(0) SECTOR SUBUNIT C, COMPND 11 DICYCLOHEXYLCARBODIIMIDE-BINDING PROTEIN, F-TYPE ATPASE SUBUNIT C, F- COMPND 12 ATPASE SUBUNIT C, LIPID-BINDING PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 6 ORGANISM_TAXID: 562 KEYWDS PROTEIN TRANSPORT, PROTEIN TRANSLOCATION, BIOINFORMATICS, MD KEYWDS 2 SIMULATION, MEMBRANE EXPDTA ELECTRON MICROSCOPY AUTHOR S.WICKLES,A.SINGHAROY,J.ANDREANI,S.SEEMAYER,L.BISCHOFF, AUTHOR 2 O.BERNINGHAUSEN,J.SOEDING,K.SCHULTEN,E.O.VANDERSLUIS,R.BECKMANN REVDAT 3 03-OCT-18 4UTQ 1 REMARK REVDAT 2 20-AUG-14 4UTQ 1 JRNL REVDAT 1 30-JUL-14 4UTQ 0 JRNL AUTH S.WICKLES,A.SINGHAROY,J.ANDREANI,S.SEEMAYER,L.BISCHOFF, JRNL AUTH 2 O.BERNINGHAUSEN,J.SOEDING,K.SCHULTEN,E.O.VAN DER SLUIS, JRNL AUTH 3 R.BECKMANN JRNL TITL A STRUCTURAL MODEL OF THE ACTIVE RIBOSOME-BOUND MEMBRANE JRNL TITL 2 PROTEIN INSERTASE YIDC. JRNL REF ELIFE V. 3 3035 2014 JRNL REFN ESSN 2050-084X JRNL PMID 25012291 JRNL DOI 10.7554/ELIFE.03035 REMARK 2 REMARK 2 RESOLUTION. 8.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SPIDER REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.035 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 8.000 REMARK 3 NUMBER OF PARTICLES : 58960 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: ONLY THE MEMBRANE PART WAS MODELED SUBMISSION BASED REMARK 3 ON EXPERIMENTAL DATA FROM EMDB EMD-2705. (DEPOSITION ID: 12685). REMARK 4 REMARK 4 4UTQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290061298. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : MONOMERIC YIDC BOUND TO REMARK 245 RIBOSOME NASCENT CHAIN REMARK 245 COMPLEX(F0C) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : VITRIFICATION 1 -- CRYOGEN- REMARK 245 ETHANE, INSTRUMENT- FEI REMARK 245 VITROBOT MARK IV, REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : NULL REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-JUN-13 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : TVIPS TEMCAM-F416 (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1300.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 20.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 24 REMARK 465 GLN A 25 REMARK 465 ASP A 26 REMARK 465 LYS A 27 REMARK 465 ASN A 28 REMARK 465 PRO A 29 REMARK 465 GLN A 30 REMARK 465 PRO A 31 REMARK 465 GLN A 32 REMARK 465 ALA A 33 REMARK 465 GLN A 34 REMARK 465 GLN A 35 REMARK 465 THR A 36 REMARK 465 THR A 37 REMARK 465 GLN A 38 REMARK 465 THR A 39 REMARK 465 THR A 40 REMARK 465 THR A 41 REMARK 465 THR A 42 REMARK 465 ALA A 43 REMARK 465 ALA A 44 REMARK 465 GLY A 45 REMARK 465 SER A 46 REMARK 465 ALA A 47 REMARK 465 ALA A 48 REMARK 465 ASP A 49 REMARK 465 GLN A 50 REMARK 465 GLY A 51 REMARK 465 VAL A 52 REMARK 465 PRO A 53 REMARK 465 ALA A 54 REMARK 465 SER A 55 REMARK 465 GLY A 56 REMARK 465 GLN A 57 REMARK 465 GLY A 58 REMARK 465 LYS A 59 REMARK 465 LEU A 60 REMARK 465 ILE A 61 REMARK 465 SER A 62 REMARK 465 VAL A 63 REMARK 465 LYS A 64 REMARK 465 THR A 65 REMARK 465 ASP A 66 REMARK 465 VAL A 67 REMARK 465 LEU A 68 REMARK 465 ASP A 69 REMARK 465 LEU A 70 REMARK 465 THR A 71 REMARK 465 ILE A 72 REMARK 465 ASN A 73 REMARK 465 THR A 74 REMARK 465 ARG A 75 REMARK 465 GLY A 76 REMARK 465 GLY A 77 REMARK 465 ASP A 78 REMARK 465 VAL A 79 REMARK 465 GLU A 80 REMARK 465 GLN A 81 REMARK 465 ALA A 82 REMARK 465 LEU A 83 REMARK 465 LEU A 84 REMARK 465 PRO A 85 REMARK 465 ALA A 86 REMARK 465 TYR A 87 REMARK 465 PRO A 88 REMARK 465 LYS A 89 REMARK 465 GLU A 90 REMARK 465 LEU A 91 REMARK 465 ASN A 92 REMARK 465 SER A 93 REMARK 465 THR A 94 REMARK 465 GLN A 95 REMARK 465 PRO A 96 REMARK 465 PHE A 97 REMARK 465 GLN A 98 REMARK 465 LEU A 99 REMARK 465 LEU A 100 REMARK 465 GLU A 101 REMARK 465 THR A 102 REMARK 465 SER A 103 REMARK 465 PRO A 104 REMARK 465 GLN A 105 REMARK 465 PHE A 106 REMARK 465 ILE A 107 REMARK 465 TYR A 108 REMARK 465 GLN A 109 REMARK 465 ALA A 110 REMARK 465 GLN A 111 REMARK 465 SER A 112 REMARK 465 GLY A 113 REMARK 465 LEU A 114 REMARK 465 THR A 115 REMARK 465 GLY A 116 REMARK 465 ARG A 117 REMARK 465 ASP A 118 REMARK 465 GLY A 119 REMARK 465 PRO A 120 REMARK 465 ASP A 121 REMARK 465 ASN A 122 REMARK 465 PRO A 123 REMARK 465 ALA A 124 REMARK 465 ASN A 125 REMARK 465 GLY A 126 REMARK 465 PRO A 127 REMARK 465 ARG A 128 REMARK 465 PRO A 129 REMARK 465 LEU A 130 REMARK 465 TYR A 131 REMARK 465 ASN A 132 REMARK 465 VAL A 133 REMARK 465 GLU A 134 REMARK 465 LYS A 135 REMARK 465 ASP A 136 REMARK 465 ALA A 137 REMARK 465 TYR A 138 REMARK 465 VAL A 139 REMARK 465 LEU A 140 REMARK 465 ALA A 141 REMARK 465 GLU A 142 REMARK 465 GLY A 143 REMARK 465 GLN A 144 REMARK 465 ASN A 145 REMARK 465 GLU A 146 REMARK 465 LEU A 147 REMARK 465 GLN A 148 REMARK 465 VAL A 149 REMARK 465 PRO A 150 REMARK 465 MET A 151 REMARK 465 THR A 152 REMARK 465 TYR A 153 REMARK 465 THR A 154 REMARK 465 ASP A 155 REMARK 465 ALA A 156 REMARK 465 ALA A 157 REMARK 465 GLY A 158 REMARK 465 ASN A 159 REMARK 465 THR A 160 REMARK 465 PHE A 161 REMARK 465 THR A 162 REMARK 465 LYS A 163 REMARK 465 THR A 164 REMARK 465 PHE A 165 REMARK 465 VAL A 166 REMARK 465 LEU A 167 REMARK 465 LYS A 168 REMARK 465 ARG A 169 REMARK 465 GLY A 170 REMARK 465 ASP A 171 REMARK 465 TYR A 172 REMARK 465 ALA A 173 REMARK 465 VAL A 174 REMARK 465 ASN A 175 REMARK 465 VAL A 176 REMARK 465 ASN A 177 REMARK 465 TYR A 178 REMARK 465 ASN A 179 REMARK 465 VAL A 180 REMARK 465 GLN A 181 REMARK 465 ASN A 182 REMARK 465 ALA A 183 REMARK 465 GLY A 184 REMARK 465 GLU A 185 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 LEU A 188 REMARK 465 GLU A 189 REMARK 465 ILE A 190 REMARK 465 SER A 191 REMARK 465 SER A 192 REMARK 465 PHE A 193 REMARK 465 GLY A 194 REMARK 465 GLN A 195 REMARK 465 LEU A 196 REMARK 465 LYS A 197 REMARK 465 GLN A 198 REMARK 465 SER A 199 REMARK 465 ILE A 200 REMARK 465 THR A 201 REMARK 465 LEU A 202 REMARK 465 PRO A 203 REMARK 465 PRO A 204 REMARK 465 HIS A 205 REMARK 465 LEU A 206 REMARK 465 ASP A 207 REMARK 465 THR A 208 REMARK 465 GLY A 209 REMARK 465 SER A 210 REMARK 465 SER A 211 REMARK 465 ASN A 212 REMARK 465 PHE A 213 REMARK 465 ALA A 214 REMARK 465 LEU A 215 REMARK 465 HIS A 216 REMARK 465 THR A 217 REMARK 465 PHE A 218 REMARK 465 ARG A 219 REMARK 465 GLY A 220 REMARK 465 ALA A 221 REMARK 465 ALA A 222 REMARK 465 TYR A 223 REMARK 465 SER A 224 REMARK 465 THR A 225 REMARK 465 PRO A 226 REMARK 465 ASP A 227 REMARK 465 GLU A 228 REMARK 465 LYS A 229 REMARK 465 TYR A 230 REMARK 465 GLU A 231 REMARK 465 LYS A 232 REMARK 465 TYR A 233 REMARK 465 LYS A 234 REMARK 465 PHE A 235 REMARK 465 ASP A 236 REMARK 465 THR A 237 REMARK 465 ILE A 238 REMARK 465 ALA A 239 REMARK 465 ASP A 240 REMARK 465 ASN A 241 REMARK 465 GLU A 242 REMARK 465 ASN A 243 REMARK 465 LEU A 244 REMARK 465 ASN A 245 REMARK 465 ILE A 246 REMARK 465 SER A 247 REMARK 465 SER A 248 REMARK 465 LYS A 249 REMARK 465 GLY A 250 REMARK 465 GLY A 251 REMARK 465 TRP A 252 REMARK 465 VAL A 253 REMARK 465 ALA A 254 REMARK 465 MET A 255 REMARK 465 LEU A 256 REMARK 465 GLN A 257 REMARK 465 GLN A 258 REMARK 465 TYR A 259 REMARK 465 PHE A 260 REMARK 465 ALA A 261 REMARK 465 THR A 262 REMARK 465 ALA A 263 REMARK 465 TRP A 264 REMARK 465 ILE A 265 REMARK 465 PRO A 266 REMARK 465 HIS A 267 REMARK 465 ASN A 268 REMARK 465 ASP A 269 REMARK 465 GLY A 270 REMARK 465 THR A 271 REMARK 465 ASN A 272 REMARK 465 ASN A 273 REMARK 465 PHE A 274 REMARK 465 TYR A 275 REMARK 465 THR A 276 REMARK 465 ALA A 277 REMARK 465 ASN A 278 REMARK 465 LEU A 279 REMARK 465 GLY A 280 REMARK 465 ASN A 281 REMARK 465 GLY A 282 REMARK 465 ILE A 283 REMARK 465 ALA A 284 REMARK 465 ALA A 285 REMARK 465 ILE A 286 REMARK 465 GLY A 287 REMARK 465 TYR A 288 REMARK 465 LYS A 289 REMARK 465 SER A 290 REMARK 465 GLN A 291 REMARK 465 PRO A 292 REMARK 465 VAL A 293 REMARK 465 LEU A 294 REMARK 465 VAL A 295 REMARK 465 GLN A 296 REMARK 465 PRO A 297 REMARK 465 GLY A 298 REMARK 465 GLN A 299 REMARK 465 THR A 300 REMARK 465 GLY A 301 REMARK 465 ALA A 302 REMARK 465 MET A 303 REMARK 465 ASN A 304 REMARK 465 SER A 305 REMARK 465 THR A 306 REMARK 465 LEU A 307 REMARK 465 TRP A 308 REMARK 465 VAL A 309 REMARK 465 GLY A 310 REMARK 465 PRO A 311 REMARK 465 GLU A 312 REMARK 465 ILE A 313 REMARK 465 GLN A 314 REMARK 465 ASP A 315 REMARK 465 LYS A 316 REMARK 465 MET A 317 REMARK 465 ALA A 318 REMARK 465 ALA A 319 REMARK 465 VAL A 320 REMARK 465 ALA A 321 REMARK 465 PRO A 322 REMARK 465 HIS A 323 REMARK 465 LEU A 324 REMARK 465 ASP A 325 REMARK 465 LEU A 326 REMARK 465 THR A 327 REMARK 465 VAL A 328 REMARK 465 ASP A 329 REMARK 465 TYR A 330 REMARK 465 GLY A 331 REMARK 465 TRP A 332 REMARK 465 LEU A 333 REMARK 465 TRP A 334 REMARK 465 PHE A 335 REMARK 465 ILE A 336 REMARK 465 SER A 337 REMARK 465 GLN A 338 REMARK 465 PRO A 339 REMARK 465 LEU A 340 REMARK 465 PHE A 341 REMARK 465 LYS A 342 REMARK 465 LEU A 343 REMARK 465 LEU A 344 REMARK 465 LYS A 345 REMARK 465 TRP A 346 REMARK 465 ILE A 347 REMARK 465 HIS A 348 REMARK 465 SER A 349 REMARK 465 PHE A 350 REMARK 465 VAL A 351 REMARK 465 LEU A 372 REMARK 465 THR A 373 REMARK 465 LYS A 374 REMARK 465 ALA A 375 REMARK 465 GLN A 376 REMARK 465 TYR A 377 REMARK 465 THR A 378 REMARK 465 SER A 379 REMARK 465 MET A 380 REMARK 465 ALA A 381 REMARK 465 LYS A 382 REMARK 465 MET A 383 REMARK 465 ARG A 384 REMARK 465 MET A 385 REMARK 465 LEU A 386 REMARK 465 GLN A 387 REMARK 465 PRO A 388 REMARK 465 LYS A 389 REMARK 465 ILE A 390 REMARK 465 GLN A 391 REMARK 465 ALA A 392 REMARK 465 MET A 393 REMARK 465 ARG A 394 REMARK 465 GLU A 395 REMARK 465 ARG A 396 REMARK 465 LEU A 397 REMARK 465 GLY A 398 REMARK 465 ASP A 399 REMARK 465 ASP A 400 REMARK 465 LYS A 401 REMARK 465 GLN A 402 REMARK 465 ARG A 403 REMARK 465 ILE A 404 REMARK 465 SER A 405 REMARK 465 GLN A 406 REMARK 465 GLU A 407 REMARK 465 MET A 408 REMARK 465 MET A 409 REMARK 465 ALA A 410 REMARK 465 LEU A 411 REMARK 465 TYR A 412 REMARK 465 LYS A 413 REMARK 465 ALA A 414 REMARK 465 GLU A 415 REMARK 465 LYS A 416 REMARK 465 VAL A 417 REMARK 465 ASN A 418 REMARK 465 LEU A 440 REMARK 465 MET A 441 REMARK 465 GLY A 442 REMARK 465 SER A 443 REMARK 465 VAL A 444 REMARK 465 GLU A 445 REMARK 465 LEU A 446 REMARK 465 ARG A 447 REMARK 465 GLN A 448 REMARK 465 ALA A 449 REMARK 465 PRO A 450 REMARK 465 PHE A 451 REMARK 465 ALA A 452 REMARK 465 LEU A 453 REMARK 465 TRP A 454 REMARK 465 ILE A 455 REMARK 465 HIS A 456 REMARK 465 ASP A 457 REMARK 465 LEU A 458 REMARK 465 SER A 459 REMARK 465 ALA A 460 REMARK 465 GLN A 461 REMARK 465 ASP A 462 REMARK 465 PRO A 463 REMARK 465 TYR A 464 REMARK 465 MET A 481 REMARK 465 SER A 482 REMARK 465 PRO A 483 REMARK 465 THR A 484 REMARK 465 THR A 485 REMARK 465 VAL A 486 REMARK 465 THR A 487 REMARK 465 ASP A 488 REMARK 465 PRO A 489 REMARK 465 MET A 490 REMARK 465 GLN A 491 REMARK 465 GLN A 492 REMARK 465 LYS A 493 REMARK 465 ARG A 533 REMARK 465 GLY A 534 REMARK 465 LEU A 535 REMARK 465 GLU A 536 REMARK 465 LYS A 537 REMARK 465 ARG A 538 REMARK 465 GLY A 539 REMARK 465 LEU A 540 REMARK 465 HIS A 541 REMARK 465 SER A 542 REMARK 465 ARG A 543 REMARK 465 GLU A 544 REMARK 465 LYS A 545 REMARK 465 LYS A 546 REMARK 465 LYS A 547 REMARK 465 SER A 548 REMARK 465 MET Z 1 REMARK 465 GLU Z 2 REMARK 465 ASN Z 3 REMARK 465 LEU Z 4 REMARK 465 ASN Z 5 REMARK 465 MET Z 6 REMARK 465 ASP Z 7 REMARK 465 LEU Z 8 REMARK 465 LEU Z 9 REMARK 465 TYR Z 10 REMARK 465 LYS Z 34 REMARK 465 PHE Z 35 REMARK 465 LEU Z 36 REMARK 465 GLU Z 37 REMARK 465 GLY Z 38 REMARK 465 ALA Z 39 REMARK 465 ALA Z 40 REMARK 465 ARG Z 41 REMARK 465 GLN Z 42 REMARK 465 PRO Z 43 REMARK 465 ASP Z 44 REMARK 465 LEU Z 45 REMARK 465 ILE Z 46 REMARK 465 PRO Z 47 REMARK 465 LEU Z 48 REMARK 465 LEU Z 49 REMARK 465 ARG Z 50 REMARK 465 THR Z 51 REMARK 465 GLN Z 52 REMARK 465 PHE Z 53 REMARK 465 PHE Z 54 REMARK 465 ILE Z 55 REMARK 465 VAL Z 56 REMARK 465 MET Z 57 REMARK 465 GLY Z 58 REMARK 465 LEU Z 59 REMARK 465 VAL Z 60 REMARK 465 ASP Z 61 REMARK 465 ALA Z 62 REMARK 465 ILE Z 63 REMARK 465 PRO Z 64 REMARK 465 MET Z 65 REMARK 465 ILE Z 66 REMARK 465 ALA Z 67 REMARK 465 VAL Z 68 REMARK 465 GLY Z 69 REMARK 465 LEU Z 70 REMARK 465 GLY Z 71 REMARK 465 LEU Z 72 REMARK 465 TYR Z 73 REMARK 465 VAL Z 74 REMARK 465 MET Z 75 REMARK 465 PHE Z 76 REMARK 465 ALA Z 77 REMARK 465 VAL Z 78 REMARK 465 ALA Z 79 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN A 6 CB CG OD1 ND2 REMARK 470 LEU A 7 CB CG CD1 CD2 REMARK 470 LEU A 8 CB CG CD1 CD2 REMARK 470 VAL A 9 CB CG1 CG2 REMARK 470 ILE A 10 CB CG1 CG2 CD1 REMARK 470 ALA A 11 CB REMARK 470 LEU A 12 CB CG CD1 CD2 REMARK 470 LEU A 13 CB CG CD1 CD2 REMARK 470 PHE A 14 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 15 CB CG1 CG2 REMARK 470 SER A 16 CB OG REMARK 470 PHE A 17 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET A 18 CB CG SD CE REMARK 470 ILE A 19 CB CG1 CG2 CD1 REMARK 470 TRP A 20 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 470 TRP A 20 CZ2 CZ3 CH2 REMARK 470 GLN A 21 CB CG CD OE1 NE2 REMARK 470 ALA A 22 CB REMARK 470 TRP A 23 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 470 TRP A 23 CZ2 CZ3 CH2 REMARK 470 ASN A 353 CB CG OD1 ND2 REMARK 470 TRP A 354 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 470 TRP A 354 CZ2 CZ3 CH2 REMARK 470 PHE A 356 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 357 CB OG REMARK 470 ILE A 358 CB CG1 CG2 CD1 REMARK 470 ILE A 359 CB CG1 CG2 CD1 REMARK 470 ILE A 360 CB CG1 CG2 CD1 REMARK 470 ILE A 361 CB CG1 CG2 CD1 REMARK 470 THR A 362 CB OG1 CG2 REMARK 470 PHE A 363 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 364 CB CG1 CG2 CD1 REMARK 470 VAL A 365 CB CG1 CG2 REMARK 470 ARG A 366 CB CG CD NE CZ NH1 NH2 REMARK 470 ILE A 368 CB CG1 CG2 CD1 REMARK 470 MET A 369 CB CG SD CE REMARK 470 TYR A 370 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 370 OH REMARK 470 PRO A 371 CB CG CD REMARK 470 PRO A 419 CB CG CD REMARK 470 LEU A 420 CB CG CD1 CD2 REMARK 470 CYS A 423 CB SG REMARK 470 PHE A 424 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO A 425 CB CG CD REMARK 470 LEU A 426 CB CG CD1 CD2 REMARK 470 LEU A 427 CB CG CD1 CD2 REMARK 470 ILE A 428 CB CG1 CG2 CD1 REMARK 470 GLN A 429 CB CG CD OE1 NE2 REMARK 470 MET A 430 CB CG SD CE REMARK 470 PRO A 431 CB CG CD REMARK 470 ILE A 432 CB CG1 CG2 CD1 REMARK 470 PHE A 433 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 434 CB CG CD1 CD2 REMARK 470 ALA A 435 CB REMARK 470 LEU A 436 CB CG CD1 CD2 REMARK 470 TYR A 437 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 437 OH REMARK 470 TYR A 438 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 438 OH REMARK 470 MET A 439 CB CG SD CE REMARK 470 TYR A 465 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 465 OH REMARK 470 ILE A 466 CB CG1 CG2 CD1 REMARK 470 LEU A 467 CB CG CD1 CD2 REMARK 470 PRO A 468 CB CG CD REMARK 470 ILE A 469 CB CG1 CG2 CD1 REMARK 470 LEU A 470 CB CG CD1 CD2 REMARK 470 MET A 471 CB CG SD CE REMARK 470 VAL A 473 CB CG1 CG2 REMARK 470 THR A 474 CB OG1 CG2 REMARK 470 MET A 475 CB CG SD CE REMARK 470 PHE A 476 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 477 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 478 CB CG1 CG2 CD1 REMARK 470 GLN A 479 CB CG CD OE1 NE2 REMARK 470 LYS A 480 CB CG CD CE NZ REMARK 470 ILE A 494 CB CG1 CG2 CD1 REMARK 470 MET A 495 CB CG SD CE REMARK 470 THR A 496 CB OG1 CG2 REMARK 470 PHE A 497 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET A 498 CB CG SD CE REMARK 470 PRO A 499 CB CG CD REMARK 470 VAL A 500 CB CG1 CG2 REMARK 470 ILE A 501 CB CG1 CG2 CD1 REMARK 470 PHE A 502 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 503 CB OG1 CG2 REMARK 470 VAL A 504 CB CG1 CG2 REMARK 470 PHE A 505 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 506 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 507 CB CG CD1 CD2 REMARK 470 TRP A 508 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 470 TRP A 508 CZ2 CZ3 CH2 REMARK 470 PHE A 509 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO A 510 CB CG CD REMARK 470 SER A 511 CB OG REMARK 470 LEU A 513 CB CG CD1 CD2 REMARK 470 VAL A 514 CB CG1 CG2 REMARK 470 LEU A 515 CB CG CD1 CD2 REMARK 470 TYR A 516 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 516 OH REMARK 470 TYR A 517 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 517 OH REMARK 470 ILE A 518 CB CG1 CG2 CD1 REMARK 470 VAL A 519 CB CG1 CG2 REMARK 470 SER A 520 CB OG REMARK 470 ASN A 521 CB CG OD1 ND2 REMARK 470 LEU A 522 CB CG CD1 CD2 REMARK 470 VAL A 523 CB CG1 CG2 REMARK 470 THR A 524 CB OG1 CG2 REMARK 470 ILE A 525 CB CG1 CG2 CD1 REMARK 470 ILE A 526 CB CG1 CG2 CD1 REMARK 470 GLN A 527 CB CG CD OE1 NE2 REMARK 470 GLN A 528 CB CG CD OE1 NE2 REMARK 470 GLN A 529 CB CG CD OE1 NE2 REMARK 470 LEU A 530 CB CG CD1 CD2 REMARK 470 ILE A 531 CB CG1 CG2 CD1 REMARK 470 TYR A 532 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 532 OH REMARK 470 MET Z 11 CB CG SD CE REMARK 470 ALA Z 12 CB REMARK 470 ALA Z 13 CB REMARK 470 ALA Z 14 CB REMARK 470 VAL Z 15 CB CG1 CG2 REMARK 470 MET Z 16 CB CG SD CE REMARK 470 MET Z 17 CB CG SD CE REMARK 470 LEU Z 19 CB CG CD1 CD2 REMARK 470 ALA Z 20 CB REMARK 470 ALA Z 21 CB REMARK 470 ILE Z 22 CB CG1 CG2 CD1 REMARK 470 ALA Z 24 CB REMARK 470 ALA Z 25 CB REMARK 470 ILE Z 26 CB CG1 CG2 CD1 REMARK 470 ILE Z 28 CB CG1 CG2 CD1 REMARK 470 ILE Z 30 CB CG1 CG2 CD1 REMARK 470 LEU Z 31 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 370 -78.37 -71.50 REMARK 500 MET Z 16 -77.11 -76.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-2705 RELATED DB: EMDB DBREF 4UTQ A 1 548 UNP P25714 YIDC_ECOLI 1 548 DBREF 4UTQ Z 1 79 UNP P68699 ATPL_ECOLI 1 79 SEQRES 1 A 548 MET ASP SER GLN ARG ASN LEU LEU VAL ILE ALA LEU LEU SEQRES 2 A 548 PHE VAL SER PHE MET ILE TRP GLN ALA TRP GLU GLN ASP SEQRES 3 A 548 LYS ASN PRO GLN PRO GLN ALA GLN GLN THR THR GLN THR SEQRES 4 A 548 THR THR THR ALA ALA GLY SER ALA ALA ASP GLN GLY VAL SEQRES 5 A 548 PRO ALA SER GLY GLN GLY LYS LEU ILE SER VAL LYS THR SEQRES 6 A 548 ASP VAL LEU ASP LEU THR ILE ASN THR ARG GLY GLY ASP SEQRES 7 A 548 VAL GLU GLN ALA LEU LEU PRO ALA TYR PRO LYS GLU LEU SEQRES 8 A 548 ASN SER THR GLN PRO PHE GLN LEU LEU GLU THR SER PRO SEQRES 9 A 548 GLN PHE ILE TYR GLN ALA GLN SER GLY LEU THR GLY ARG SEQRES 10 A 548 ASP GLY PRO ASP ASN PRO ALA ASN GLY PRO ARG PRO LEU SEQRES 11 A 548 TYR ASN VAL GLU LYS ASP ALA TYR VAL LEU ALA GLU GLY SEQRES 12 A 548 GLN ASN GLU LEU GLN VAL PRO MET THR TYR THR ASP ALA SEQRES 13 A 548 ALA GLY ASN THR PHE THR LYS THR PHE VAL LEU LYS ARG SEQRES 14 A 548 GLY ASP TYR ALA VAL ASN VAL ASN TYR ASN VAL GLN ASN SEQRES 15 A 548 ALA GLY GLU LYS PRO LEU GLU ILE SER SER PHE GLY GLN SEQRES 16 A 548 LEU LYS GLN SER ILE THR LEU PRO PRO HIS LEU ASP THR SEQRES 17 A 548 GLY SER SER ASN PHE ALA LEU HIS THR PHE ARG GLY ALA SEQRES 18 A 548 ALA TYR SER THR PRO ASP GLU LYS TYR GLU LYS TYR LYS SEQRES 19 A 548 PHE ASP THR ILE ALA ASP ASN GLU ASN LEU ASN ILE SER SEQRES 20 A 548 SER LYS GLY GLY TRP VAL ALA MET LEU GLN GLN TYR PHE SEQRES 21 A 548 ALA THR ALA TRP ILE PRO HIS ASN ASP GLY THR ASN ASN SEQRES 22 A 548 PHE TYR THR ALA ASN LEU GLY ASN GLY ILE ALA ALA ILE SEQRES 23 A 548 GLY TYR LYS SER GLN PRO VAL LEU VAL GLN PRO GLY GLN SEQRES 24 A 548 THR GLY ALA MET ASN SER THR LEU TRP VAL GLY PRO GLU SEQRES 25 A 548 ILE GLN ASP LYS MET ALA ALA VAL ALA PRO HIS LEU ASP SEQRES 26 A 548 LEU THR VAL ASP TYR GLY TRP LEU TRP PHE ILE SER GLN SEQRES 27 A 548 PRO LEU PHE LYS LEU LEU LYS TRP ILE HIS SER PHE VAL SEQRES 28 A 548 GLY ASN TRP GLY PHE SER ILE ILE ILE ILE THR PHE ILE SEQRES 29 A 548 VAL ARG GLY ILE MET TYR PRO LEU THR LYS ALA GLN TYR SEQRES 30 A 548 THR SER MET ALA LYS MET ARG MET LEU GLN PRO LYS ILE SEQRES 31 A 548 GLN ALA MET ARG GLU ARG LEU GLY ASP ASP LYS GLN ARG SEQRES 32 A 548 ILE SER GLN GLU MET MET ALA LEU TYR LYS ALA GLU LYS SEQRES 33 A 548 VAL ASN PRO LEU GLY GLY CYS PHE PRO LEU LEU ILE GLN SEQRES 34 A 548 MET PRO ILE PHE LEU ALA LEU TYR TYR MET LEU MET GLY SEQRES 35 A 548 SER VAL GLU LEU ARG GLN ALA PRO PHE ALA LEU TRP ILE SEQRES 36 A 548 HIS ASP LEU SER ALA GLN ASP PRO TYR TYR ILE LEU PRO SEQRES 37 A 548 ILE LEU MET GLY VAL THR MET PHE PHE ILE GLN LYS MET SEQRES 38 A 548 SER PRO THR THR VAL THR ASP PRO MET GLN GLN LYS ILE SEQRES 39 A 548 MET THR PHE MET PRO VAL ILE PHE THR VAL PHE PHE LEU SEQRES 40 A 548 TRP PHE PRO SER GLY LEU VAL LEU TYR TYR ILE VAL SER SEQRES 41 A 548 ASN LEU VAL THR ILE ILE GLN GLN GLN LEU ILE TYR ARG SEQRES 42 A 548 GLY LEU GLU LYS ARG GLY LEU HIS SER ARG GLU LYS LYS SEQRES 43 A 548 LYS SER SEQRES 1 Z 79 MET GLU ASN LEU ASN MET ASP LEU LEU TYR MET ALA ALA SEQRES 2 Z 79 ALA VAL MET MET GLY LEU ALA ALA ILE GLY ALA ALA ILE SEQRES 3 Z 79 GLY ILE GLY ILE LEU GLY GLY LYS PHE LEU GLU GLY ALA SEQRES 4 Z 79 ALA ARG GLN PRO ASP LEU ILE PRO LEU LEU ARG THR GLN SEQRES 5 Z 79 PHE PHE ILE VAL MET GLY LEU VAL ASP ALA ILE PRO MET SEQRES 6 Z 79 ILE ALA VAL GLY LEU GLY LEU TYR VAL MET PHE ALA VAL SEQRES 7 Z 79 ALA HELIX 1 1 ARG A 5 TRP A 23 1 19 HELIX 2 2 GLY A 352 MET A 369 1 18 HELIX 3 3 PRO A 419 MET A 439 1 21 HELIX 4 4 TYR A 465 LYS A 480 1 16 HELIX 5 5 THR A 496 PHE A 509 1 14 HELIX 6 6 LEU A 513 TYR A 532 1 20 HELIX 7 7 MET Z 11 LEU Z 31 1 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000