data_4UUT # _entry.id 4UUT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4UUT PDBE EBI-61420 WWPDB D_1290061420 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4UUS _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4UUT _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2014-07-31 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Foos, N.' 1 'Mate, M.J.' 2 'Ortiz-Lombardia, M.' 3 # _citation.id primary _citation.title 'A Flexible Extension of the Drosophila Ultrabithorax Homeodomain Defines a Novel Hox/Pbc Interaction Mode.' _citation.journal_abbrev Structure _citation.journal_volume 23 _citation.page_first 270 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25651060 _citation.pdbx_database_id_DOI 10.1016/J.STR.2014.12.011 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Foos, N.' 1 primary 'Maurel-Zaffran, C.' 2 primary 'Mate, M.J.' 3 primary 'Vincentelli, R.' 4 primary 'Hainaut, M.' 5 primary 'Berenger, H.' 6 primary 'Pradel, J.' 7 primary 'Saurin, A.J.' 8 primary 'Ortiz-Lombardia, M.' 9 primary 'Graba, Y.' 10 # _cell.entry_id 4UUT _cell.length_a 98.648 _cell.length_b 98.648 _cell.length_c 98.648 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4UUT _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HOMEOTIC PROTEIN ULTRABITHORAX' 11459.246 1 ? ? 'HOMEODOMAIN AND UBDA, RESIDUES 233-324' ? 2 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 water nat water 18.015 7 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQASNHTFYPWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI QAIKELNEQEKQA ; _entity_poly.pdbx_seq_one_letter_code_can ;MQASNHTFYPWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI QAIKELNEQEKQA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ALA n 1 4 SER n 1 5 ASN n 1 6 HIS n 1 7 THR n 1 8 PHE n 1 9 TYR n 1 10 PRO n 1 11 TRP n 1 12 MET n 1 13 ALA n 1 14 ILE n 1 15 ALA n 1 16 GLY n 1 17 THR n 1 18 ASN n 1 19 GLY n 1 20 LEU n 1 21 ARG n 1 22 ARG n 1 23 ARG n 1 24 GLY n 1 25 ARG n 1 26 GLN n 1 27 THR n 1 28 TYR n 1 29 THR n 1 30 ARG n 1 31 TYR n 1 32 GLN n 1 33 THR n 1 34 LEU n 1 35 GLU n 1 36 LEU n 1 37 GLU n 1 38 LYS n 1 39 GLU n 1 40 PHE n 1 41 HIS n 1 42 THR n 1 43 ASN n 1 44 HIS n 1 45 TYR n 1 46 LEU n 1 47 THR n 1 48 ARG n 1 49 ARG n 1 50 ARG n 1 51 ARG n 1 52 ILE n 1 53 GLU n 1 54 MET n 1 55 ALA n 1 56 HIS n 1 57 ALA n 1 58 LEU n 1 59 CYS n 1 60 LEU n 1 61 THR n 1 62 GLU n 1 63 ARG n 1 64 GLN n 1 65 ILE n 1 66 LYS n 1 67 ILE n 1 68 TRP n 1 69 PHE n 1 70 GLN n 1 71 ASN n 1 72 ARG n 1 73 ARG n 1 74 MET n 1 75 LYS n 1 76 LEU n 1 77 LYS n 1 78 LYS n 1 79 GLU n 1 80 ILE n 1 81 GLN n 1 82 ALA n 1 83 ILE n 1 84 LYS n 1 85 GLU n 1 86 LEU n 1 87 ASN n 1 88 GLU n 1 89 GLN n 1 90 GLU n 1 91 LYS n 1 92 GLN n 1 93 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'FRUIT FLY' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'DROSOPHILA MELANOGASTER' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant 'ROSETTA PLYSS' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PDEST14 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'UBXIVA PDEST14' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UBX_DROME _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P83949 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4UUT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 93 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P83949 _struct_ref_seq.db_align_beg 233 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 324 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -18 _struct_ref_seq.pdbx_auth_seq_align_end 73 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4UUT _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P83949 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num -19 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.entry_id 4UUT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.5 _exptl_crystal.density_percent_sol 64.86 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '20% 1-4 BUTANEDIOL, 0.2M LISO4, 0.1M MES PH 6' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2011-10-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.974716 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 0.974716 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4UUT _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 69.75 _reflns.d_resolution_high 2.80 _reflns.number_obs 4428 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.80 _reflns.B_iso_Wilson_estimate 101.67 _reflns.pdbx_redundancy 8.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 3.13 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.58 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.90 _reflns_shell.pdbx_redundancy 8.8 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4UUT _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 4390 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 69.75 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 99.68 _refine.ls_R_factor_obs 0.2192 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2175 _refine.ls_R_factor_R_free 0.2366 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.25 _refine.ls_number_reflns_R_free 406 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9378 _refine.correlation_coeff_Fo_to_Fc_free 0.9407 _refine.B_iso_mean 88.31 _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'LOCAL STRUCTURE OF UBX' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.346 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.248 _refine.pdbx_overall_SU_R_Blow_DPI 0.386 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.257 # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4UUT _refine_analyze.Luzzati_coordinate_error_obs 0.503 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 593 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 622 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 69.75 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.010 ? 2.00 618 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 1.03 ? 2.00 827 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 240 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 19 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 83 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 618 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_omega_torsion 2.31 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 20.69 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 78 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 698 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 3.13 _refine_ls_shell.number_reflns_R_work 1092 _refine_ls_shell.R_factor_R_work 0.2401 _refine_ls_shell.percent_reflns_obs 99.68 _refine_ls_shell.R_factor_R_free 0.2882 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 8.85 _refine_ls_shell.number_reflns_R_free 106 _refine_ls_shell.number_reflns_all 1198 _refine_ls_shell.R_factor_all 0.2439 # _struct.entry_id 4UUT _struct.title 'Crystal structure of the Ultrabithorax protein' _struct.pdbx_descriptor 'HOMEOTIC PROTEIN ULTRABITHORAX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4UUT _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, UBX, HOMEOTIC PROTEIN, TRANSCRIPTION FACTOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 3 ? H N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 29 ? ASN A 43 ? THR A 9 ASN A 23 1 ? 15 HELX_P HELX_P2 2 THR A 47 ? CYS A 59 ? THR A 27 CYS A 39 1 ? 13 HELX_P HELX_P3 3 THR A 61 ? LYS A 91 ? THR A 41 LYS A 71 1 ? 31 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 1074' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 1075' AC3 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE SO4 A 1076' AC4 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CL A 1077' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 1078' AC6 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CL A 1079' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ARG A 73 ? ARG A 53 . ? 1_555 ? 2 AC1 2 HOH H . ? HOH A 2005 . ? 1_555 ? 3 AC2 5 PHE A 40 ? PHE A 20 . ? 20_554 ? 4 AC2 5 HIS A 41 ? HIS A 21 . ? 20_554 ? 5 AC2 5 HIS A 44 ? HIS A 24 . ? 20_554 ? 6 AC2 5 ARG A 48 ? ARG A 28 . ? 1_555 ? 7 AC2 5 ARG A 49 ? ARG A 29 . ? 1_555 ? 8 AC3 1 MET A 54 ? MET A 34 . ? 1_555 ? 9 AC4 1 ARG A 51 ? ARG A 31 . ? 1_555 ? 10 AC5 4 HIS A 41 ? HIS A 21 . ? 17_455 ? 11 AC5 4 ARG A 48 ? ARG A 28 . ? 4_455 ? 12 AC5 4 ARG A 49 ? ARG A 29 . ? 4_455 ? 13 AC5 4 LYS A 91 ? LYS A 71 . ? 1_555 ? 14 AC6 1 ARG A 30 ? ARG A 10 . ? 1_555 ? # _database_PDB_matrix.entry_id 4UUT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4UUT _atom_sites.fract_transf_matrix[1][1] 0.010137 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010137 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010137 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -19 ? ? ? A . n A 1 2 GLN 2 -18 ? ? ? A . n A 1 3 ALA 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 ASN 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 THR 7 -13 ? ? ? A . n A 1 8 PHE 8 -12 ? ? ? A . n A 1 9 TYR 9 -11 ? ? ? A . n A 1 10 PRO 10 -10 ? ? ? A . n A 1 11 TRP 11 -9 ? ? ? A . n A 1 12 MET 12 -8 ? ? ? A . n A 1 13 ALA 13 -7 ? ? ? A . n A 1 14 ILE 14 -6 ? ? ? A . n A 1 15 ALA 15 -5 ? ? ? A . n A 1 16 GLY 16 -4 ? ? ? A . n A 1 17 THR 17 -3 ? ? ? A . n A 1 18 ASN 18 -2 ? ? ? A . n A 1 19 GLY 19 -1 ? ? ? A . n A 1 20 LEU 20 0 ? ? ? A . n A 1 21 ARG 21 1 ? ? ? A . n A 1 22 ARG 22 2 ? ? ? A . n A 1 23 ARG 23 3 ? ? ? A . n A 1 24 GLY 24 4 ? ? ? A . n A 1 25 ARG 25 5 ? ? ? A . n A 1 26 GLN 26 6 ? ? ? A . n A 1 27 THR 27 7 7 THR THR A . n A 1 28 TYR 28 8 8 TYR TYR A . n A 1 29 THR 29 9 9 THR THR A . n A 1 30 ARG 30 10 10 ARG ARG A . n A 1 31 TYR 31 11 11 TYR TYR A . n A 1 32 GLN 32 12 12 GLN GLN A . n A 1 33 THR 33 13 13 THR THR A . n A 1 34 LEU 34 14 14 LEU LEU A . n A 1 35 GLU 35 15 15 GLU GLU A . n A 1 36 LEU 36 16 16 LEU LEU A . n A 1 37 GLU 37 17 17 GLU GLU A . n A 1 38 LYS 38 18 18 LYS LYS A . n A 1 39 GLU 39 19 19 GLU GLU A . n A 1 40 PHE 40 20 20 PHE PHE A . n A 1 41 HIS 41 21 21 HIS HIS A . n A 1 42 THR 42 22 22 THR THR A . n A 1 43 ASN 43 23 23 ASN ASN A . n A 1 44 HIS 44 24 24 HIS HIS A . n A 1 45 TYR 45 25 25 TYR TYR A . n A 1 46 LEU 46 26 26 LEU LEU A . n A 1 47 THR 47 27 27 THR THR A . n A 1 48 ARG 48 28 28 ARG ARG A . n A 1 49 ARG 49 29 29 ARG ARG A . n A 1 50 ARG 50 30 30 ARG ARG A . n A 1 51 ARG 51 31 31 ARG ARG A . n A 1 52 ILE 52 32 32 ILE ILE A . n A 1 53 GLU 53 33 33 GLU GLU A . n A 1 54 MET 54 34 34 MET MET A . n A 1 55 ALA 55 35 35 ALA ALA A . n A 1 56 HIS 56 36 36 HIS HIS A . n A 1 57 ALA 57 37 37 ALA ALA A . n A 1 58 LEU 58 38 38 LEU LEU A . n A 1 59 CYS 59 39 39 CYS CYS A . n A 1 60 LEU 60 40 40 LEU LEU A . n A 1 61 THR 61 41 41 THR THR A . n A 1 62 GLU 62 42 42 GLU GLU A . n A 1 63 ARG 63 43 43 ARG ARG A . n A 1 64 GLN 64 44 44 GLN GLN A . n A 1 65 ILE 65 45 45 ILE ILE A . n A 1 66 LYS 66 46 46 LYS LYS A . n A 1 67 ILE 67 47 47 ILE ILE A . n A 1 68 TRP 68 48 48 TRP TRP A . n A 1 69 PHE 69 49 49 PHE PHE A . n A 1 70 GLN 70 50 50 GLN GLN A . n A 1 71 ASN 71 51 51 ASN ASN A . n A 1 72 ARG 72 52 52 ARG ARG A . n A 1 73 ARG 73 53 53 ARG ARG A . n A 1 74 MET 74 54 54 MET MET A . n A 1 75 LYS 75 55 55 LYS LYS A . n A 1 76 LEU 76 56 56 LEU LEU A . n A 1 77 LYS 77 57 57 LYS LYS A . n A 1 78 LYS 78 58 58 LYS LYS A . n A 1 79 GLU 79 59 59 GLU GLU A . n A 1 80 ILE 80 60 60 ILE ILE A . n A 1 81 GLN 81 61 61 GLN GLN A . n A 1 82 ALA 82 62 62 ALA ALA A . n A 1 83 ILE 83 63 63 ILE ILE A . n A 1 84 LYS 84 64 64 LYS LYS A . n A 1 85 GLU 85 65 65 GLU GLU A . n A 1 86 LEU 86 66 66 LEU LEU A . n A 1 87 ASN 87 67 67 ASN ASN A . n A 1 88 GLU 88 68 68 GLU GLU A . n A 1 89 GLN 89 69 69 GLN GLN A . n A 1 90 GLU 90 70 70 GLU GLU A . n A 1 91 LYS 91 71 71 LYS LYS A . n A 1 92 GLN 92 72 72 GLN GLN A . n A 1 93 ALA 93 73 73 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1074 1074 SO4 SO4 A . C 2 SO4 1 1075 1075 SO4 SO4 A . D 2 SO4 1 1076 1076 SO4 SO4 A . E 3 CL 1 1077 1077 CL CL A . F 2 SO4 1 1078 1078 SO4 SO4 A . G 3 CL 1 1079 1079 CL CL A . H 4 HOH 1 2001 2001 HOH HOH A . H 4 HOH 2 2002 2002 HOH HOH A . H 4 HOH 3 2003 2003 HOH HOH A . H 4 HOH 4 2004 2004 HOH HOH A . H 4 HOH 5 2005 2005 HOH HOH A . H 4 HOH 6 2006 2006 HOH HOH A . H 4 HOH 7 2007 2007 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2002 ? H HOH . 2 1 A HOH 2004 ? H HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2015-02-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -12.0782 _pdbx_refine_tls.origin_y 15.4626 _pdbx_refine_tls.origin_z -3.2635 _pdbx_refine_tls.T[1][1] -0.1874 _pdbx_refine_tls.T[2][2] 0.0380 _pdbx_refine_tls.T[3][3] -0.1093 _pdbx_refine_tls.T[1][2] 0.0998 _pdbx_refine_tls.T[1][3] -0.0117 _pdbx_refine_tls.T[2][3] 0.0851 _pdbx_refine_tls.L[1][1] 5.2072 _pdbx_refine_tls.L[2][2] 2.4925 _pdbx_refine_tls.L[3][3] 1.6875 _pdbx_refine_tls.L[1][2] -1.9989 _pdbx_refine_tls.L[1][3] -2.9831 _pdbx_refine_tls.L[2][3] 1.3350 _pdbx_refine_tls.S[1][1] -0.0211 _pdbx_refine_tls.S[1][2] 0.3164 _pdbx_refine_tls.S[1][3] 0.1117 _pdbx_refine_tls.S[2][1] -0.4276 _pdbx_refine_tls.S[2][2] -0.1226 _pdbx_refine_tls.S[2][3] 0.0817 _pdbx_refine_tls.S[3][1] 0.1926 _pdbx_refine_tls.S[3][2] -0.3112 _pdbx_refine_tls.S[3][3] 0.1437 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'CHAIN A' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BUSTER refinement 2.11.5 ? 1 AutoPROC 'data reduction' . ? 2 Aimless 'data scaling' . ? 3 PHASER phasing . ? 4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -19 ? A MET 1 2 1 Y 1 A GLN -18 ? A GLN 2 3 1 Y 1 A ALA -17 ? A ALA 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A ASN -15 ? A ASN 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A THR -13 ? A THR 7 8 1 Y 1 A PHE -12 ? A PHE 8 9 1 Y 1 A TYR -11 ? A TYR 9 10 1 Y 1 A PRO -10 ? A PRO 10 11 1 Y 1 A TRP -9 ? A TRP 11 12 1 Y 1 A MET -8 ? A MET 12 13 1 Y 1 A ALA -7 ? A ALA 13 14 1 Y 1 A ILE -6 ? A ILE 14 15 1 Y 1 A ALA -5 ? A ALA 15 16 1 Y 1 A GLY -4 ? A GLY 16 17 1 Y 1 A THR -3 ? A THR 17 18 1 Y 1 A ASN -2 ? A ASN 18 19 1 Y 1 A GLY -1 ? A GLY 19 20 1 Y 1 A LEU 0 ? A LEU 20 21 1 Y 1 A ARG 1 ? A ARG 21 22 1 Y 1 A ARG 2 ? A ARG 22 23 1 Y 1 A ARG 3 ? A ARG 23 24 1 Y 1 A GLY 4 ? A GLY 24 25 1 Y 1 A ARG 5 ? A ARG 25 26 1 Y 1 A GLN 6 ? A GLN 26 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'CHLORIDE ION' CL 4 water HOH #