HEADER CELL CYCLE 06-AUG-14 4UVJ TITLE COHESIN SUBUNIT SCC3 FROM YEAST, 674-1072 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COHESIN SUBUNIT SCC3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 674-1072; COMPND 5 SYNONYM: IRREGULAR CELL BEHAVIOR PROTEIN 1, SCC3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS CELL CYCLE, COHESIN, MITOSIS, HEAT REPEATS, SMC PROTEINS EXPDTA X-RAY DIFFRACTION AUTHOR M.B.ROIG,K.NASMYTH,J.LOWE REVDAT 3 08-OCT-14 4UVJ 1 JRNL REVDAT 2 10-SEP-14 4UVJ 1 JRNL REVDAT 1 20-AUG-14 4UVJ 0 JRNL AUTH M.B.ROIG,J.LOWE,K.L.CHAN,F.BECKOUET,J.METSON,K.NASMYTH JRNL TITL STRUCTURE AND FUNCTION OF COHESINS SCC3/SA REGULATORY JRNL TITL 2 SUBUNIT JRNL REF FEBS LETT. V. 588 3692 2014 JRNL REFN ISSN 0014-5793 JRNL PMID 25171859 JRNL DOI 10.1016/J.FEBSLET.2014.08.015 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 97.46 REMARK 3 NUMBER OF REFLECTIONS : 48926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18930 REMARK 3 R VALUE (WORKING SET) : 0.18631 REMARK 3 FREE R VALUE : 0.24678 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2571 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.100 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.154 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3573 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.265 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.291 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 401 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.572 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30 REMARK 3 B22 (A**2) : -0.28 REMARK 3 B33 (A**2) : -0.12 REMARK 3 B12 (A**2) : -0.33 REMARK 3 B13 (A**2) : 0.01 REMARK 3 B23 (A**2) : 0.43 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.492 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6120 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8258 ; 1.872 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 720 ; 6.302 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;39.289 ;25.035 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1180 ;19.631 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.918 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 958 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4436 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2904 ; 2.008 ; 4.693 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3616 ; 3.140 ; 5.991 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3216 ; 3.195 ; 5.483 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 675 A 1059 4 REMARK 3 1 B 675 B 1059 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2993 ; 0.39 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B(A**2): 2993 ; 3.60 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 675 A 1059 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7777 6.6528 2.0294 REMARK 3 T TENSOR REMARK 3 T11: 0.0587 T22: 0.0659 REMARK 3 T33: 0.0710 T12: 0.0150 REMARK 3 T13: -0.0227 T23: -0.0658 REMARK 3 L TENSOR REMARK 3 L11: 1.1070 L22: 1.0678 REMARK 3 L33: 1.4426 L12: 0.4460 REMARK 3 L13: -0.1314 L23: -0.3995 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: -0.0618 S13: 0.0142 REMARK 3 S21: 0.0609 S22: -0.0366 S23: -0.0310 REMARK 3 S31: -0.0004 S32: 0.0280 S33: 0.0166 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 675 B 1059 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9147 8.6519 39.8659 REMARK 3 T TENSOR REMARK 3 T11: 0.0104 T22: 0.0942 REMARK 3 T33: 0.0359 T12: 0.0288 REMARK 3 T13: -0.0191 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 1.2810 L22: 0.5413 REMARK 3 L33: 0.6248 L12: 0.0951 REMARK 3 L13: -0.3080 L23: 0.2003 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.0632 S13: 0.0215 REMARK 3 S21: -0.0158 S22: -0.0040 S23: 0.0194 REMARK 3 S31: -0.0013 S32: 0.0256 S33: 0.0184 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4UVJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-AUG-14. REMARK 100 THE PDBE ID CODE IS EBI-61454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48926 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.10 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 1.9 REMARK 200 R MERGE (I) : 0.12 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.9 REMARK 200 R MERGE FOR SHELL (I) : 0.41 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 673 REMARK 465 ILE A 693 REMARK 465 GLU A 694 REMARK 465 SER A 695 REMARK 465 ALA A 696 REMARK 465 ASP A 697 REMARK 465 LEU A 711 REMARK 465 ASP A 712 REMARK 465 ASP A 713 REMARK 465 TRP A 714 REMARK 465 ILE A 715 REMARK 465 SER A 716 REMARK 465 ILE A 717 REMARK 465 GLY A 718 REMARK 465 TYR A 719 REMARK 465 TYR A 881 REMARK 465 GLU A 882 REMARK 465 ASN A 883 REMARK 465 SER A 884 REMARK 465 ILE A 885 REMARK 465 SER A 886 REMARK 465 LYS A 887 REMARK 465 ASP A 888 REMARK 465 ASP A 1060 REMARK 465 ASP A 1061 REMARK 465 THR A 1062 REMARK 465 ILE A 1063 REMARK 465 MET A 1064 REMARK 465 GLU A 1065 REMARK 465 ASN A 1066 REMARK 465 PRO A 1067 REMARK 465 GLU A 1068 REMARK 465 PRO A 1069 REMARK 465 ASN A 1070 REMARK 465 LYS A 1071 REMARK 465 LYS A 1072 REMARK 465 HIS A 1073 REMARK 465 HIS A 1074 REMARK 465 HIS A 1075 REMARK 465 HIS A 1076 REMARK 465 HIS A 1077 REMARK 465 HIS A 1078 REMARK 465 MET B 673 REMARK 465 ILE B 693 REMARK 465 GLU B 694 REMARK 465 SER B 695 REMARK 465 ALA B 696 REMARK 465 ASP B 697 REMARK 465 LEU B 711 REMARK 465 ASP B 712 REMARK 465 ASP B 713 REMARK 465 TRP B 714 REMARK 465 ILE B 715 REMARK 465 SER B 716 REMARK 465 ILE B 717 REMARK 465 GLY B 718 REMARK 465 TYR B 719 REMARK 465 TYR B 881 REMARK 465 GLU B 882 REMARK 465 ASN B 883 REMARK 465 SER B 884 REMARK 465 ILE B 885 REMARK 465 SER B 886 REMARK 465 LYS B 887 REMARK 465 ASP B 888 REMARK 465 ASP B 1060 REMARK 465 ASP B 1061 REMARK 465 THR B 1062 REMARK 465 ILE B 1063 REMARK 465 MET B 1064 REMARK 465 GLU B 1065 REMARK 465 ASN B 1066 REMARK 465 PRO B 1067 REMARK 465 GLU B 1068 REMARK 465 PRO B 1069 REMARK 465 ASN B 1070 REMARK 465 LYS B 1071 REMARK 465 LYS B 1072 REMARK 465 HIS B 1073 REMARK 465 HIS B 1074 REMARK 465 HIS B 1075 REMARK 465 HIS B 1076 REMARK 465 HIS B 1077 REMARK 465 HIS B 1078 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C SER A 692 O HOH A 2013 2.16 REMARK 500 CG ASN A 772 O HOH A 2045 2.18 REMARK 500 OD1 ASN A 772 O HOH A 2045 1.96 REMARK 500 CB CYS A 803 O HOH A 2069 2.05 REMARK 500 ND2 ASN A 834 NH2 ARG A 902 2.09 REMARK 500 O VAL A 1059 O HOH A 2192 2.13 REMARK 500 N ASP B 674 O HOH B 2001 2.06 REMARK 500 CB CYS B 803 O HOH B 2075 2.00 REMARK 500 O HOH A 2038 O HOH A 2146 1.99 REMARK 500 O HOH A 2087 O HOH A 2161 2.10 REMARK 500 O HOH A 2115 O HOH A 2116 2.16 REMARK 500 O HOH A 2118 O HOH A 2119 2.20 REMARK 500 O HOH B 2069 O HOH B 2071 2.10 REMARK 500 O HOH B 2098 O HOH B 2101 2.15 REMARK 500 O HOH B 2204 O HOH B 2206 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2053 O HOH B 2203 2655 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 859 CG - SD - CE ANGL. DEV. = -10.1 DEGREES REMARK 500 LEU B 805 CB - CG - CD2 ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG B 902 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 MET B 935 CG - SD - CE ANGL. DEV. = -17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 708 -98.35 -87.60 REMARK 500 PHE A 709 -106.69 -3.20 REMARK 500 ASN A 741 135.13 -38.74 REMARK 500 ARG A 795 129.39 -39.72 REMARK 500 TYR A 809 -57.88 -123.44 REMARK 500 PHE A 836 -70.09 -113.41 REMARK 500 ARG A 879 -174.17 55.15 REMARK 500 SER A 891 24.73 -147.10 REMARK 500 ALA A 952 49.64 -91.94 REMARK 500 PHE B 709 -143.83 -69.48 REMARK 500 ARG B 879 -172.82 75.57 REMARK 500 SER B 891 32.47 -142.58 REMARK 500 ALA B 952 52.61 -94.09 REMARK 500 ALA B 998 -41.68 -27.13 REMARK 500 ASP B1001 99.55 -51.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 877 VAL A 878 148.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PHE A 709 22.0 L L OUTSIDE RANGE REMARK 500 SER B 710 24.9 L L OUTSIDE RANGE REMARK 500 ARG B 795 24.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UVK RELATED DB: PDB REMARK 900 COHESIN SUBUNIT SCC3 FROM Z. ROUXII, 88-1035 DBREF 4UVJ A 674 1072 UNP P40541 SCC3_YEAST 674 1072 DBREF 4UVJ B 674 1072 UNP P40541 SCC3_YEAST 674 1072 SEQADV 4UVJ MET A 673 UNP P40541 EXPRESSION TAG SEQADV 4UVJ HIS A 1073 UNP P40541 EXPRESSION TAG SEQADV 4UVJ HIS A 1074 UNP P40541 EXPRESSION TAG SEQADV 4UVJ HIS A 1075 UNP P40541 EXPRESSION TAG SEQADV 4UVJ HIS A 1076 UNP P40541 EXPRESSION TAG SEQADV 4UVJ HIS A 1077 UNP P40541 EXPRESSION TAG SEQADV 4UVJ HIS A 1078 UNP P40541 EXPRESSION TAG SEQADV 4UVJ MET B 673 UNP P40541 EXPRESSION TAG SEQADV 4UVJ HIS B 1073 UNP P40541 EXPRESSION TAG SEQADV 4UVJ HIS B 1074 UNP P40541 EXPRESSION TAG SEQADV 4UVJ HIS B 1075 UNP P40541 EXPRESSION TAG SEQADV 4UVJ HIS B 1076 UNP P40541 EXPRESSION TAG SEQADV 4UVJ HIS B 1077 UNP P40541 EXPRESSION TAG SEQADV 4UVJ HIS B 1078 UNP P40541 EXPRESSION TAG SEQRES 1 A 406 MET ASP SER VAL LYS GLU ILE VAL LEU PRO LEU PHE TYR SEQRES 2 A 406 ASP LEU LEU ASN ALA ALA SER ILE GLU SER ALA ASP ILE SEQRES 3 A 406 LEU CYS PRO LEU LEU GLU SER PHE ILE THR PHE SER LEU SEQRES 4 A 406 ASP ASP TRP ILE SER ILE GLY TYR GLU THR GLU LEU LYS SEQRES 5 A 406 LYS ILE THR ASP LYS THR ILE LYS ALA PHE MET ASP SER SEQRES 6 A 406 THR ILE GLY ASN SER LYS VAL ASP MET LYS TYR ASP ILE SEQRES 7 A 406 PHE ALA LYS PHE ILE HIS HIS ILE HIS HIS PHE GLU LYS SEQRES 8 A 406 LYS GLU LEU GLN GLU LYS PHE LEU ASN GLN ILE ALA THR SEQRES 9 A 406 LEU LYS ILE HIS LEU LYS LYS PHE LEU GLN GLU LYS MET SEQRES 10 A 406 ASP PRO ASN ASN SER ARG ASP ASP TYR LYS ASP LEU THR SEQRES 11 A 406 CYS SER LEU TYR GLU LEU TYR ILE ASN LYS LEU THR ILE SEQRES 12 A 406 LEU GLY ARG ASP TYR PRO ILE GLU VAL ASP GLU GLU LEU SEQRES 13 A 406 LEU GLN LEU PHE LEU ASN ASN PHE VAL SER ARG ILE PRO SEQRES 14 A 406 ILE MET PHE GLN ASP PHE ASP ASP SER THR ALA GLN GLU SEQRES 15 A 406 ILE ASN PHE LYS MET LEU VAL LEU LEU ALA THR TRP ASN SEQRES 16 A 406 LEU GLU LYS TRP ARG GLU ILE ILE GLU LYS VAL ARG ASP SEQRES 17 A 406 TYR GLU ASN SER ILE SER LYS ASP LEU ARG SER VAL TRP SEQRES 18 A 406 LYS PRO ILE ALA ALA ILE ILE GLY ARG LEU ASN THR LEU SEQRES 19 A 406 VAL ILE SER LEU ALA ALA THR ASN GLU THR PHE GLU ASN SEQRES 20 A 406 ILE ASN SER LEU PHE TYR LEU LYS TRP SER ALA CYS THR SEQRES 21 A 406 SER LEU MET ASP ILE ILE VAL ALA ILE LYS ILE PHE GLU SEQRES 22 A 406 LEU LYS LEU PRO ALA ASP ALA THR THR TRP ARG TYR SER SEQRES 23 A 406 MET SER GLU GLN PHE PRO PHE TYR LEU HIS ASP ASN ALA SEQRES 24 A 406 SER LYS VAL LEU LEU LYS ILE PHE LEU TYR LEU GLU SER SEQRES 25 A 406 LEU PHE ALA LYS GLN VAL ASP VAL GLN LEU GLU ARG VAL SEQRES 26 A 406 ALA ASP GLU ASP ALA ASN LEU ASN ASP LEU PRO GLU THR SEQRES 27 A 406 GLY PHE PHE GLU ASN ILE GLU THR GLU PHE LEU LEU PHE SEQRES 28 A 406 THR VAL LYS LEU LYS GLY LEU MET LYS LEU ASN ILE LEU SEQRES 29 A 406 ASP GLU ARG PHE ALA SER ARG VAL ALA LEU ASN LYS GLU SEQRES 30 A 406 LYS LEU GLY PRO LEU PHE LYS LYS ILE VAL ASP ASP THR SEQRES 31 A 406 ILE MET GLU ASN PRO GLU PRO ASN LYS LYS HIS HIS HIS SEQRES 32 A 406 HIS HIS HIS SEQRES 1 B 406 MET ASP SER VAL LYS GLU ILE VAL LEU PRO LEU PHE TYR SEQRES 2 B 406 ASP LEU LEU ASN ALA ALA SER ILE GLU SER ALA ASP ILE SEQRES 3 B 406 LEU CYS PRO LEU LEU GLU SER PHE ILE THR PHE SER LEU SEQRES 4 B 406 ASP ASP TRP ILE SER ILE GLY TYR GLU THR GLU LEU LYS SEQRES 5 B 406 LYS ILE THR ASP LYS THR ILE LYS ALA PHE MET ASP SER SEQRES 6 B 406 THR ILE GLY ASN SER LYS VAL ASP MET LYS TYR ASP ILE SEQRES 7 B 406 PHE ALA LYS PHE ILE HIS HIS ILE HIS HIS PHE GLU LYS SEQRES 8 B 406 LYS GLU LEU GLN GLU LYS PHE LEU ASN GLN ILE ALA THR SEQRES 9 B 406 LEU LYS ILE HIS LEU LYS LYS PHE LEU GLN GLU LYS MET SEQRES 10 B 406 ASP PRO ASN ASN SER ARG ASP ASP TYR LYS ASP LEU THR SEQRES 11 B 406 CYS SER LEU TYR GLU LEU TYR ILE ASN LYS LEU THR ILE SEQRES 12 B 406 LEU GLY ARG ASP TYR PRO ILE GLU VAL ASP GLU GLU LEU SEQRES 13 B 406 LEU GLN LEU PHE LEU ASN ASN PHE VAL SER ARG ILE PRO SEQRES 14 B 406 ILE MET PHE GLN ASP PHE ASP ASP SER THR ALA GLN GLU SEQRES 15 B 406 ILE ASN PHE LYS MET LEU VAL LEU LEU ALA THR TRP ASN SEQRES 16 B 406 LEU GLU LYS TRP ARG GLU ILE ILE GLU LYS VAL ARG ASP SEQRES 17 B 406 TYR GLU ASN SER ILE SER LYS ASP LEU ARG SER VAL TRP SEQRES 18 B 406 LYS PRO ILE ALA ALA ILE ILE GLY ARG LEU ASN THR LEU SEQRES 19 B 406 VAL ILE SER LEU ALA ALA THR ASN GLU THR PHE GLU ASN SEQRES 20 B 406 ILE ASN SER LEU PHE TYR LEU LYS TRP SER ALA CYS THR SEQRES 21 B 406 SER LEU MET ASP ILE ILE VAL ALA ILE LYS ILE PHE GLU SEQRES 22 B 406 LEU LYS LEU PRO ALA ASP ALA THR THR TRP ARG TYR SER SEQRES 23 B 406 MET SER GLU GLN PHE PRO PHE TYR LEU HIS ASP ASN ALA SEQRES 24 B 406 SER LYS VAL LEU LEU LYS ILE PHE LEU TYR LEU GLU SER SEQRES 25 B 406 LEU PHE ALA LYS GLN VAL ASP VAL GLN LEU GLU ARG VAL SEQRES 26 B 406 ALA ASP GLU ASP ALA ASN LEU ASN ASP LEU PRO GLU THR SEQRES 27 B 406 GLY PHE PHE GLU ASN ILE GLU THR GLU PHE LEU LEU PHE SEQRES 28 B 406 THR VAL LYS LEU LYS GLY LEU MET LYS LEU ASN ILE LEU SEQRES 29 B 406 ASP GLU ARG PHE ALA SER ARG VAL ALA LEU ASN LYS GLU SEQRES 30 B 406 LYS LEU GLY PRO LEU PHE LYS LYS ILE VAL ASP ASP THR SEQRES 31 B 406 ILE MET GLU ASN PRO GLU PRO ASN LYS LYS HIS HIS HIS SEQRES 32 B 406 HIS HIS HIS FORMUL 3 HOH *401(H2 O) HELIX 1 1 ASP A 674 ILE A 679 1 6 HELIX 2 2 ILE A 679 SER A 692 1 14 HELIX 3 3 LEU A 699 THR A 708 1 10 HELIX 4 4 GLU A 720 SER A 737 1 18 HELIX 5 5 MET A 746 GLU A 762 1 17 HELIX 6 6 LYS A 763 MET A 789 1 27 HELIX 7 7 ASP A 797 TYR A 809 1 13 HELIX 8 8 TYR A 809 TYR A 820 1 12 HELIX 9 9 ASP A 825 PHE A 836 1 12 HELIX 10 10 ARG A 839 PHE A 844 1 6 HELIX 11 11 GLN A 845 PHE A 847 5 3 HELIX 12 12 ASP A 848 ILE A 855 1 8 HELIX 13 13 PHE A 857 LYS A 877 1 21 HELIX 14 14 TRP A 893 ALA A 912 1 20 HELIX 15 15 ASN A 919 LYS A 947 1 29 HELIX 16 16 ALA A 952 PHE A 963 1 12 HELIX 17 17 HIS A 968 VAL A 990 1 23 HELIX 18 18 ASP A 1001 ASP A 1006 5 6 HELIX 19 19 ASN A 1015 LEU A 1033 1 19 HELIX 20 20 ASP A 1037 LEU A 1046 1 10 HELIX 21 21 GLY A 1052 VAL A 1059 1 8 HELIX 22 22 ASP B 674 ILE B 679 1 6 HELIX 23 23 ILE B 679 ALA B 691 1 13 HELIX 24 24 LEU B 699 PHE B 709 1 11 HELIX 25 25 GLU B 720 SER B 737 1 18 HELIX 26 26 MET B 746 GLU B 762 1 17 HELIX 27 27 LYS B 763 LYS B 788 1 26 HELIX 28 28 ASP B 797 TYR B 809 1 13 HELIX 29 29 TYR B 809 TYR B 820 1 12 HELIX 30 30 ASP B 825 PHE B 836 1 12 HELIX 31 31 ARG B 839 PHE B 844 1 6 HELIX 32 32 GLN B 845 PHE B 847 5 3 HELIX 33 33 ASP B 848 ILE B 855 1 8 HELIX 34 34 PHE B 857 VAL B 878 1 22 HELIX 35 35 TRP B 893 ALA B 912 1 20 HELIX 36 36 ASN B 919 LYS B 947 1 29 HELIX 37 37 ALA B 952 PHE B 963 1 12 HELIX 38 38 HIS B 968 ASP B 991 1 24 HELIX 39 39 ASP B 1001 LEU B 1007 5 7 HELIX 40 40 ASN B 1015 LEU B 1033 1 19 HELIX 41 41 ASP B 1037 LEU B 1046 1 10 HELIX 42 42 GLY B 1052 VAL B 1059 1 8 CRYST1 56.787 58.022 80.179 80.68 82.00 63.99 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017610 -0.008593 -0.001510 0.00000 SCALE2 0.000000 0.019177 -0.002189 0.00000 SCALE3 0.000000 0.000000 0.012676 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.664268 -0.746966 0.028120 13.37960 1 MTRIX2 2 -0.746333 0.660670 -0.080634 7.81267 1 MTRIX3 2 0.041652 -0.074550 -0.996347 42.18226 1