HEADER TRANSFERASE 11-AUG-14 4UWC TITLE FIBROBLAST GROWTH FACTOR RECEPTOR 1 KINASE IN COMPLEX WITH JK-P3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 458-765; COMPND 5 SYNONYM: FGFR-1, BASIC FIBROBLAST GROWTH FACTOR RECEPTOR 1, BFGFR, B COMPND 6 FGF-R-1, FMS-LIKE TYROSINE KINASE 2, FLT-2, N-SAM, PROTO-ONCOGENE C- COMPND 7 FGR, FIBROBLAST GROWTH FACTOR RECEPTOR 1 KINASE; COMPND 8 EC: 2.7.10.1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS TRANSFERASE, RECEPTOR TYROSINE KINASE, TRANSFERASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR H.BEESTON,J.TUCKER,J.KANKANALA REVDAT 4 16-JUN-21 4UWC 1 JRNL REMARK REVDAT 3 14-JUN-17 4UWC 1 REMARK REVDAT 2 29-MAR-17 4UWC 1 REMARK REVDAT 1 02-SEP-15 4UWC 0 JRNL AUTH H.S.BEESTON,T.KLEIN,R.A.NORMAN,J.A.TUCKER,M.ANDERSON, JRNL AUTH 2 A.E.ASHCROFT,G.A.HOLDGATE JRNL TITL VALIDATION OF IMS-MS AS A SCREENING TOOL TO IDENTIFY TYPE II JRNL TITL 2 KINASE INHIBITORS OF FGFR1 KINASE. JRNL REF RAPID COMMUN MASS SPECTROM E9130 2021 JRNL REFN ISSN 1097-0231 JRNL PMID 34038603 JRNL DOI 10.1002/RCM.9130 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 3 NUMBER OF REFLECTIONS : 47602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2440 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.56 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1606 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2231 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1527 REMARK 3 BIN R VALUE (WORKING SET) : 0.2223 REMARK 3 BIN FREE R VALUE : 0.2363 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.92 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 79 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4600 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 141 REMARK 3 SOLVENT ATOMS : 339 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.93270 REMARK 3 B22 (A**2) : -13.22180 REMARK 3 B33 (A**2) : 5.28920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.81630 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.160 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.138 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.158 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.138 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4901 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6654 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1655 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 103 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 710 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4901 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 612 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5827 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.00 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.92 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 80.5576 -2.4581 18.8726 REMARK 3 T TENSOR REMARK 3 T11: -0.1000 T22: -0.0461 REMARK 3 T33: -0.1395 T12: -0.0342 REMARK 3 T13: -0.0126 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 2.2359 L22: 0.2601 REMARK 3 L33: 1.2177 L12: -0.1371 REMARK 3 L13: -0.5420 L23: -0.0663 REMARK 3 S TENSOR REMARK 3 S11: 0.1297 S12: -0.0459 S13: 0.1277 REMARK 3 S21: -0.0345 S22: -0.0504 S23: -0.0134 REMARK 3 S31: -0.1570 S32: 0.1828 S33: -0.0794 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 34.2021 2.4797 13.8337 REMARK 3 T TENSOR REMARK 3 T11: -0.0911 T22: -0.0889 REMARK 3 T33: -0.1160 T12: 0.0042 REMARK 3 T13: -0.0141 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 2.1769 L22: 0.8052 REMARK 3 L33: 0.8165 L12: -0.7833 REMARK 3 L13: -0.0435 L23: 0.2424 REMARK 3 S TENSOR REMARK 3 S11: 0.1010 S12: 0.1977 S13: -0.1500 REMARK 3 S21: 0.0417 S22: -0.2221 S23: 0.1158 REMARK 3 S31: 0.0429 S32: -0.0935 S33: 0.1211 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDERED SIDE-CHAINS WERE TRUNCATED REMARK 3 TO THE LAST VISIBLE ATOM. REMARK 4 REMARK 4 4UWC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1290061469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION MAY 10 2010 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47605 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 29.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INTERNAL FGFR1 MODEL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 20% ETHYLENE GLYCOL, 0.2M REMARK 280 AMMONIUM SULPHATE, 0.1M PCTP PH 6.75 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 103.73200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.21100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 103.73200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.21100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2018 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 457 REMARK 465 ALA A 458 REMARK 465 GLY A 459 REMARK 465 VAL A 460 REMARK 465 SER A 461 REMARK 465 GLU A 462 REMARK 465 TYR A 463 REMARK 465 GLU A 464 REMARK 465 GLY B 457 REMARK 465 ALA B 458 REMARK 465 LYS B 502 REMARK 465 ASP B 503 REMARK 465 ASN B 586 REMARK 465 PRO B 587 REMARK 465 SER B 588 REMARK 465 GLU B 765 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 482 CG CD CE NZ REMARK 470 GLU A 486 CG CD OE1 OE2 REMARK 470 ASP A 501 CG OD1 OD2 REMARK 470 LYS A 502 CG CD CE NZ REMARK 470 ASP A 503 CG OD1 OD2 REMARK 470 ARG A 507 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 517 CG CD CE NZ REMARK 470 SER A 518 OG REMARK 470 GLU A 522 CG CD OE1 OE2 REMARK 470 LYS A 523 CD CE NZ REMARK 470 LYS A 542 CE NZ REMARK 470 TYR A 585 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 586 N CA CB CG OD1 ND2 REMARK 470 SER A 588 OG REMARK 470 ASN A 590 CG OD1 ND2 REMARK 470 GLU A 592 CG CD OE1 OE2 REMARK 470 ARG A 646 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 647 CG OD1 OD2 REMARK 470 HIS A 649 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 650 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 651 CG1 CG2 CD1 REMARK 470 LYS A 655 CG CD CE NZ REMARK 470 THR A 658 OG1 CG2 REMARK 470 ASN A 659 CG OD1 ND2 REMARK 470 ARG A 675 CD NE CZ NH1 NH2 REMARK 470 GLU A 707 CG CD OE1 OE2 REMARK 470 ASN A 724 CG OD1 ND2 REMARK 470 LYS A 748 CE NZ REMARK 470 LYS B 482 CG CD CE NZ REMARK 470 GLU B 486 CG CD OE1 OE2 REMARK 470 ASP B 501 CG OD1 OD2 REMARK 470 LYS B 504 CG CD CE NZ REMARK 470 ASN B 506 CG OD1 ND2 REMARK 470 ARG B 507 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 510 NZ REMARK 470 GLU B 522 CG CD OE1 OE2 REMARK 470 LYS B 523 CD CE NZ REMARK 470 LYS B 542 CD CE NZ REMARK 470 LEU B 581 CG CD1 CD2 REMARK 470 GLU B 582 CG CD OE1 OE2 REMARK 470 TYR B 585 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS B 589 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 592 CG CD OE1 OE2 REMARK 470 LYS B 618 CE NZ REMARK 470 GLU B 633 CG CD OE1 OE2 REMARK 470 ASP B 647 CG OD1 OD2 REMARK 470 ILE B 648 CG1 CG2 CD1 REMARK 470 HIS B 649 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 650 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 651 CG1 CG2 CD1 REMARK 470 LYS B 655 CD CE NZ REMARK 470 THR B 658 OG1 CG2 REMARK 470 ASN B 659 CG OD1 ND2 REMARK 470 GLU B 707 CG CD OE1 OE2 REMARK 470 LYS B 711 CD CE NZ REMARK 470 LYS B 714 CE NZ REMARK 470 ASN B 724 OD1 ND2 REMARK 470 ASN B 763 CG OD1 ND2 REMARK 470 GLN B 764 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 486 6.77 107.05 REMARK 500 ALA A 488 -81.51 -154.20 REMARK 500 ASP A 519 31.46 -90.16 REMARK 500 ASN A 590 86.03 -150.55 REMARK 500 ARG A 622 -19.33 81.81 REMARK 500 HIS A 649 -77.76 -93.75 REMARK 500 HIS A 650 -143.54 44.02 REMARK 500 ASN A 724 48.03 -90.59 REMARK 500 ASP B 468 83.11 -151.66 REMARK 500 LEU B 581 -20.72 -148.41 REMARK 500 ARG B 622 -14.74 82.79 REMARK 500 ASP B 623 46.12 -142.62 REMARK 500 HIS B 649 -83.63 -63.13 REMARK 500 HIS B 650 -164.62 51.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1765 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1766 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1767 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1766 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1767 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1768 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1768 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1769 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1769 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1770 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1771 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1772 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4Y0 A 1773 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4Y0 B 1770 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPI A 1774 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPI B 1771 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPI A 1775 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1776 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1772 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1777 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1778 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1773 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1779 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UWB RELATED DB: PDB REMARK 900 FIBROBLAST GROWTH FACTOR RECEPTOR 1 KINASE IN COMPLEX WITH JK-P5 REMARK 999 REMARK 999 SEQUENCE REMARK 999 TWO MUTATIONS INTRODUCED TO IMPROVE CRYSTALLISATION AND REMARK 999 REDUCE AGGREGATION C488A C584S DBREF 4UWC A 458 765 UNP P11362 FGFR1_HUMAN 458 765 DBREF 4UWC B 458 765 UNP P11362 FGFR1_HUMAN 458 765 SEQADV 4UWC GLY A 457 UNP P11362 EXPRESSION TAG SEQADV 4UWC ALA A 488 UNP P11362 CYS 488 ENGINEERED MUTATION SEQADV 4UWC SER A 584 UNP P11362 CYS 584 ENGINEERED MUTATION SEQADV 4UWC GLY B 457 UNP P11362 EXPRESSION TAG SEQADV 4UWC ALA B 488 UNP P11362 CYS 488 ENGINEERED MUTATION SEQADV 4UWC SER B 584 UNP P11362 CYS 584 ENGINEERED MUTATION SEQRES 1 A 309 GLY ALA GLY VAL SER GLU TYR GLU LEU PRO GLU ASP PRO SEQRES 2 A 309 ARG TRP GLU LEU PRO ARG ASP ARG LEU VAL LEU GLY LYS SEQRES 3 A 309 PRO LEU GLY GLU GLY ALA PHE GLY GLN VAL VAL LEU ALA SEQRES 4 A 309 GLU ALA ILE GLY LEU ASP LYS ASP LYS PRO ASN ARG VAL SEQRES 5 A 309 THR LYS VAL ALA VAL LYS MET LEU LYS SER ASP ALA THR SEQRES 6 A 309 GLU LYS ASP LEU SER ASP LEU ILE SER GLU MET GLU MET SEQRES 7 A 309 MET LYS MET ILE GLY LYS HIS LYS ASN ILE ILE ASN LEU SEQRES 8 A 309 LEU GLY ALA CYS THR GLN ASP GLY PRO LEU TYR VAL ILE SEQRES 9 A 309 VAL GLU TYR ALA SER LYS GLY ASN LEU ARG GLU TYR LEU SEQRES 10 A 309 GLN ALA ARG ARG PRO PRO GLY LEU GLU TYR SER TYR ASN SEQRES 11 A 309 PRO SER HIS ASN PRO GLU GLU GLN LEU SER SER LYS ASP SEQRES 12 A 309 LEU VAL SER CYS ALA TYR GLN VAL ALA ARG GLY MET GLU SEQRES 13 A 309 TYR LEU ALA SER LYS LYS CYS ILE HIS ARG ASP LEU ALA SEQRES 14 A 309 ALA ARG ASN VAL LEU VAL THR GLU ASP ASN VAL MET LYS SEQRES 15 A 309 ILE ALA ASP PHE GLY LEU ALA ARG ASP ILE HIS HIS ILE SEQRES 16 A 309 ASP TYR TYR LYS LYS THR THR ASN GLY ARG LEU PRO VAL SEQRES 17 A 309 LYS TRP MET ALA PRO GLU ALA LEU PHE ASP ARG ILE TYR SEQRES 18 A 309 THR HIS GLN SER ASP VAL TRP SER PHE GLY VAL LEU LEU SEQRES 19 A 309 TRP GLU ILE PHE THR LEU GLY GLY SER PRO TYR PRO GLY SEQRES 20 A 309 VAL PRO VAL GLU GLU LEU PHE LYS LEU LEU LYS GLU GLY SEQRES 21 A 309 HIS ARG MET ASP LYS PRO SER ASN CYS THR ASN GLU LEU SEQRES 22 A 309 TYR MET MET MET ARG ASP CYS TRP HIS ALA VAL PRO SER SEQRES 23 A 309 GLN ARG PRO THR PHE LYS GLN LEU VAL GLU ASP LEU ASP SEQRES 24 A 309 ARG ILE VAL ALA LEU THR SER ASN GLN GLU SEQRES 1 B 309 GLY ALA GLY VAL SER GLU TYR GLU LEU PRO GLU ASP PRO SEQRES 2 B 309 ARG TRP GLU LEU PRO ARG ASP ARG LEU VAL LEU GLY LYS SEQRES 3 B 309 PRO LEU GLY GLU GLY ALA PHE GLY GLN VAL VAL LEU ALA SEQRES 4 B 309 GLU ALA ILE GLY LEU ASP LYS ASP LYS PRO ASN ARG VAL SEQRES 5 B 309 THR LYS VAL ALA VAL LYS MET LEU LYS SER ASP ALA THR SEQRES 6 B 309 GLU LYS ASP LEU SER ASP LEU ILE SER GLU MET GLU MET SEQRES 7 B 309 MET LYS MET ILE GLY LYS HIS LYS ASN ILE ILE ASN LEU SEQRES 8 B 309 LEU GLY ALA CYS THR GLN ASP GLY PRO LEU TYR VAL ILE SEQRES 9 B 309 VAL GLU TYR ALA SER LYS GLY ASN LEU ARG GLU TYR LEU SEQRES 10 B 309 GLN ALA ARG ARG PRO PRO GLY LEU GLU TYR SER TYR ASN SEQRES 11 B 309 PRO SER HIS ASN PRO GLU GLU GLN LEU SER SER LYS ASP SEQRES 12 B 309 LEU VAL SER CYS ALA TYR GLN VAL ALA ARG GLY MET GLU SEQRES 13 B 309 TYR LEU ALA SER LYS LYS CYS ILE HIS ARG ASP LEU ALA SEQRES 14 B 309 ALA ARG ASN VAL LEU VAL THR GLU ASP ASN VAL MET LYS SEQRES 15 B 309 ILE ALA ASP PHE GLY LEU ALA ARG ASP ILE HIS HIS ILE SEQRES 16 B 309 ASP TYR TYR LYS LYS THR THR ASN GLY ARG LEU PRO VAL SEQRES 17 B 309 LYS TRP MET ALA PRO GLU ALA LEU PHE ASP ARG ILE TYR SEQRES 18 B 309 THR HIS GLN SER ASP VAL TRP SER PHE GLY VAL LEU LEU SEQRES 19 B 309 TRP GLU ILE PHE THR LEU GLY GLY SER PRO TYR PRO GLY SEQRES 20 B 309 VAL PRO VAL GLU GLU LEU PHE LYS LEU LEU LYS GLU GLY SEQRES 21 B 309 HIS ARG MET ASP LYS PRO SER ASN CYS THR ASN GLU LEU SEQRES 22 B 309 TYR MET MET MET ARG ASP CYS TRP HIS ALA VAL PRO SER SEQRES 23 B 309 GLN ARG PRO THR PHE LYS GLN LEU VAL GLU ASP LEU ASP SEQRES 24 B 309 ARG ILE VAL ALA LEU THR SER ASN GLN GLU HET EDO A1766 4 HET EDO A1767 4 HET EDO A1768 4 HET EDO A1769 4 HET EDO A1770 4 HET EDO A1771 4 HET EDO A1772 4 HET 4Y0 A1773 41 HET PPI A1774 5 HET PPI A1775 5 HET SO4 A1776 5 HET SO4 A1777 5 HET SO4 A1778 5 HET SO4 A1779 5 HET EDO B1765 4 HET EDO B1766 4 HET EDO B1767 4 HET EDO B1768 4 HET EDO B1769 4 HET 4Y0 B1770 41 HET PPI B1771 5 HET SO4 B1772 5 HET SO4 B1773 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM 4Y0 3,4-DIMETHOXY-N-(5-PHENYL-1H-PYRAZOL-3-YL)BENZAMIDE HETNAM PPI PROPANOIC ACID HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 12(C2 H6 O2) FORMUL 10 4Y0 2(C18 H17 N3 O3) FORMUL 11 PPI 3(C3 H6 O2) FORMUL 13 SO4 6(O4 S 2-) FORMUL 26 HOH *339(H2 O) HELIX 1 1 PRO A 474 ASP A 476 5 3 HELIX 2 2 THR A 521 GLY A 539 1 19 HELIX 3 3 ASN A 568 ARG A 576 1 9 HELIX 4 4 SER A 596 LYS A 617 1 22 HELIX 5 5 ALA A 625 ARG A 627 5 3 HELIX 6 6 LEU A 662 MET A 667 5 6 HELIX 7 7 ALA A 668 ARG A 675 1 8 HELIX 8 8 THR A 678 THR A 695 1 18 HELIX 9 9 PRO A 705 GLU A 715 1 11 HELIX 10 10 THR A 726 TRP A 737 1 12 HELIX 11 11 VAL A 740 ARG A 744 5 5 HELIX 12 12 THR A 746 THR A 761 1 16 HELIX 13 13 GLY B 459 TYR B 463 5 5 HELIX 14 14 PRO B 474 ASP B 476 5 3 HELIX 15 15 THR B 521 GLY B 539 1 19 HELIX 16 16 ASN B 568 ALA B 575 1 8 HELIX 17 17 SER B 596 LYS B 617 1 22 HELIX 18 18 ALA B 625 ARG B 627 5 3 HELIX 19 19 LEU B 662 MET B 667 5 6 HELIX 20 20 ALA B 668 ARG B 675 1 8 HELIX 21 21 THR B 678 THR B 695 1 18 HELIX 22 22 PRO B 705 GLU B 715 1 11 HELIX 23 23 THR B 726 TRP B 737 1 12 HELIX 24 24 VAL B 740 ARG B 744 5 5 HELIX 25 25 THR B 746 THR B 761 1 16 SHEET 1 AA 5 LEU A 478 PRO A 483 0 SHEET 2 AA 5 GLN A 491 ILE A 498 -1 O LEU A 494 N GLY A 481 SHEET 3 AA 5 VAL A 508 MET A 515 -1 O THR A 509 N ALA A 497 SHEET 4 AA 5 TYR A 558 GLU A 562 -1 O VAL A 559 N LYS A 514 SHEET 5 AA 5 LEU A 547 CYS A 551 -1 N LEU A 548 O ILE A 560 SHEET 1 AB 2 VAL A 629 VAL A 631 0 SHEET 2 AB 2 MET A 637 ILE A 639 -1 O LYS A 638 N LEU A 630 SHEET 1 BA 5 LEU B 478 GLU B 486 0 SHEET 2 BA 5 GLY B 490 ILE B 498 -1 O VAL B 492 N LEU B 484 SHEET 3 BA 5 VAL B 508 LEU B 516 -1 O THR B 509 N ALA B 497 SHEET 4 BA 5 TYR B 558 GLU B 562 -1 O VAL B 559 N LYS B 514 SHEET 5 BA 5 LEU B 547 CYS B 551 -1 N LEU B 548 O ILE B 560 SHEET 1 BB 2 VAL B 629 VAL B 631 0 SHEET 2 BB 2 MET B 637 ILE B 639 -1 O LYS B 638 N LEU B 630 CISPEP 1 ASP A 503 LYS A 504 0 2.17 CISPEP 2 ILE A 648 HIS A 649 0 -1.42 CISPEP 3 HIS A 650 ILE A 651 0 -2.54 CISPEP 4 ILE B 648 HIS B 649 0 5.41 CISPEP 5 HIS B 650 ILE B 651 0 -1.51 SITE 1 AC1 4 ASN B 628 ASP B 641 EDO B1769 4Y0 B1770 SITE 1 AC2 7 GLU A 531 ALA A 640 ASP A 641 PHE A 642 SITE 2 AC2 7 GLY A 643 4Y0 A1773 HOH A2021 SITE 1 AC3 6 TRP A 684 TYR A 701 ARG A 718 MET A 719 SITE 2 AC3 6 TRP A 737 HOH A2091 SITE 1 AC4 7 GLU B 531 ALA B 640 ASP B 641 PHE B 642 SITE 2 AC4 7 GLY B 643 4Y0 B1770 HOH B2027 SITE 1 AC5 6 TRP B 684 TYR B 701 ARG B 718 MET B 719 SITE 2 AC5 6 TRP B 737 HOH B2116 SITE 1 AC6 5 PRO B 466 ILE B 529 GLU B 533 THR B 552 SITE 2 AC6 5 HOH B2044 SITE 1 AC7 6 ALA A 615 THR A 746 PHE A 747 LYS A 748 SITE 2 AC7 6 HOH A2164 HOH A2165 SITE 1 AC8 4 ARG A 470 TRP A 471 SO4 A1777 SO4 A1779 SITE 1 AC9 4 ASN B 568 ARG B 627 EDO B1765 4Y0 B1770 SITE 1 BC1 1 LYS A 714 SITE 1 BC2 5 TYR A 572 LEU A 595 ASP A 599 GLN A 606 SITE 2 BC2 5 ASN A 635 SITE 1 BC3 4 LYS A 665 GLY A 703 VAL A 704 HOH A2108 SITE 1 BC4 12 LEU A 484 ILE A 545 VAL A 561 GLU A 562 SITE 2 BC4 12 TYR A 563 ALA A 564 SER A 565 GLY A 567 SITE 3 BC4 12 GLU A 571 LEU A 630 EDO A1766 PPI A1775 SITE 1 BC5 12 VAL B 492 VAL B 561 GLU B 562 TYR B 563 SITE 2 BC5 12 ALA B 564 SER B 565 GLY B 567 GLU B 571 SITE 3 BC5 12 LEU B 630 EDO B1765 EDO B1766 EDO B1769 SITE 1 BC6 4 ARG A 577 GLY A 698 SER A 699 HIS B 717 SITE 1 BC7 6 SER B 597 PHE B 694 ASN B 724 CYS B 725 SITE 2 BC7 6 THR B 726 LEU B 729 SITE 1 BC8 4 LYS A 566 TYR A 572 ARG A 576 4Y0 A1773 SITE 1 BC9 7 ARG A 570 ARG A 627 THR A 657 ASN A 659 SITE 2 BC9 7 ARG A 661 HOH A2076 HOH A2166 SITE 1 CC1 6 ARG B 570 ARG B 627 THR B 657 ASN B 659 SITE 2 CC1 6 ARG B 661 HOH B2095 SITE 1 CC2 7 ARG A 470 TRP A 471 GLU A 472 LEU A 500 SITE 2 CC2 7 LEU A 548 GLY A 549 EDO A1769 SITE 1 CC3 6 GLY A 539 LYS A 540 LYS A 618 HOH A2031 SITE 2 CC3 6 HOH A2167 HOH A2168 SITE 1 CC4 3 SER A 584 TYR A 585 ARG B 734 SITE 1 CC5 5 ARG A 470 LYS A 618 HIS A 679 EDO A1769 SITE 2 CC5 5 HOH A2004 CRYST1 207.464 58.422 65.946 90.00 107.38 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004820 0.000000 0.001509 0.00000 SCALE2 0.000000 0.017117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015889 0.00000 MTRIX1 1 -0.993000 0.111000 0.049000 113.96901 1 MTRIX2 1 0.119000 0.816000 0.566000 -16.50727 1 MTRIX3 1 0.023000 0.568000 -0.823000 28.61719 1